Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 9.0e-171 603.6 327 100.0
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 9.4e-136 487.3 332 81.6
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 5.0e-129 464.9 317 78.9
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.8e-126 456.4 344 73.0
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 3.4e-125 452.2 277 84.5
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.7e-124 449.9 324 75.0
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 6.3e-124 448.0 332 75.3
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 7.3e-120 434.5 332 72.0
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 7.3e-120 434.5 486 57.0
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 4.7e-119 431.8 269 81.8
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 6.8e-118 427.9 340 71.2
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.2e-114 417.2 278 78.4
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 3.5e-114 415.6 315 70.5
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 4.6e-114 415.2 280 78.6
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 3.9e-113 412.1 275 77.8
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 5.0e-113 411.8 285 76.1
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.6e-112 408.3 294 73.8
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 9.5e-112 407.5 319 69.0
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.8e-111 406.0 294 73.1
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.1e-110 404.1 287 74.2
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.4e-110 403.7 307 70.0
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.8e-110 403.3 305 70.8
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 2.3e-110 402.9 301 72.4
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 4.0e-110 402.1 260 79.6
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 6.8e-110 401.4 301 69.8
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 8.9e-110 401.0 253 79.8
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 8.9e-110 401.0 262 78.2
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.0e-109 399.8 270 77.4
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 2.6e-109 399.4 260 79.6
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.6e-109 399.4 302 69.2
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 2.6e-109 399.4 273 75.5
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 5.8e-109 398.3 296 71.6
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 5.8e-109 398.3 302 69.2
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 7.5e-109 397.9 305 71.1
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 7.5e-109 397.9 277 74.4
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 1.3e-108 397.1 315 69.8
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.7e-108 396.7 265 75.1
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.7e-108 396.7 319 67.4
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 2.9e-108 396.0 322 68.0
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 3.7e-108 395.6 312 67.9
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.9e-108 395.2 287 71.8
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 4.9e-108 395.2 292 71.9
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 6.4e-108 394.8 288 70.8
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 6.4e-108 394.8 288 72.6
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 8.3e-108 394.4 284 73.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 8.3e-108 394.4 283 73.1
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 8.3e-108 394.4 307 70.0
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.9e-107 393.3 286 72.7
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 4.1e-107 392.1 301 70.4
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 4.1e-107 392.1 305 67.9
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 7.1e-107 391.3 314 65.9
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.2e-106 390.6 302 66.6
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 2.1e-106 389.8 260 76.2
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 3.5e-106 389.0 305 68.5
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 3.5e-106 389.0 310 67.7
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 3.5e-106 389.0 316 66.8
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 6.0e-106 388.3 246 80.1
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.3e-105 387.1 259 74.1
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 2.3e-105 386.3 260 76.2
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 3.9e-105 385.6 253 78.3
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 3.9e-105 385.6 279 73.1
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.5e-104 383.6 249 76.3
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.9e-104 383.3 286 69.6
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 5.6e-104 381.7 325 66.5
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 5.6e-104 381.7 284 70.4
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 7.3e-104 381.3 298 67.1
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 2.1e-103 379.8 276 71.4
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 2.8e-103 379.4 316 65.5
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 3.6e-103 379.0 297 67.3
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 6.2e-103 378.3 288 68.8
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.1e-102 377.5 305 65.6
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 1.8e-102 376.7 270 72.2
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.5e-101 373.6 283 68.2
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 4.4e-101 372.1 366 57.9
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 5.8e-101 371.7 329 62.6
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 7.5e-101 371.3 283 67.5
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 9.9e-101 370.9 270 70.4
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.3e-100 370.5 266 71.1
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.7e-100 370.2 270 70.0
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 2.2e-100 369.8 266 71.8
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.2e-100 369.8 266 71.1
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.2e-100 369.8 266 71.4
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 2.9e-100 369.4 265 71.7
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 3.7e-100 369.0 266 71.4
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 1.1e-99 367.5 352 58.8
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 3.2e-99 365.9 318 61.9
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 5.4e-99 365.2 256 73.0
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 7.1e-99 364.8 293 65.5
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 1.6e-98 363.6 300 66.7
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.1e-98 363.2 305 64.9
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 2.7e-98 362.8 280 70.0
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 2.3e-97 359.8 381 56.4
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 1.2e-95 354.0 265 68.3
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 6.2e-95 351.7 242 76.4
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 6.2e-95 351.7 242 76.4
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 8.1e-95 351.3 271 67.2
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 6.4e-92 341.7 244 72.5
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.1e-90 336.7 266 68.8
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 4.3e-88 328.9 254 63.0
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 1.6e-87 327.0 248 69.4
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.3e-84 317.4 221 77.4
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 4.2e-83 312.4 220 75.5
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 6.0e-82 308.5 251 60.6
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 4.3e-80 302.4 238 70.2
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.8e-79 299.7 218 73.4
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 9.0e-78 294.7 243 66.7
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 9.9e-77 291.2 245 58.4
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.9e-76 289.7 203 76.4
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.4e-75 287.3 258 57.0
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 3.5e-74 282.7 247 57.1
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 1.6e-71 273.9 242 56.6
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 1.1e-70 271.2 303 50.8
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.4e-70 270.8 241 58.5
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 5.3e-70 268.9 178 75.8
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.8e-68 262.7 232 60.8
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.9e-59 233.8 147 81.0
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.4e-54 217.6 236 53.0
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 2.4e-54 216.9 233 57.5
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 5.3e-54 215.7 251 49.4
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 3.8e-52 209.5 162 66.0
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 5.1e-49 199.1 161 63.4
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 7.7e-45 185.3 255 43.1
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.7e-44 184.1 304 41.1
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 2.9e-44 183.3 199 56.8
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.0e-28 131.7 87 79.3
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 2.0e-21 107.5 105 59.0
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 7.7e-21 105.5 117 53.8
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 4.7e-18 96.3 71 69.0
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 4.4e-16 89.7 57 78.9
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 5.7e-16 89.4 53 86.8
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.3e-12 77.4 63 54.0
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 1.7e-07 61.2 208 28.4
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 2.9e-07 60.5 42 69.0
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 6.4e-07 59.3 48 54.2
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 7.0e-06 55.8 221 29.4
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 9.2e-06 55.5 39 61.5
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 9.2e-06 55.5 252 25.4


User provided reference genes

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