Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 0.0e+00 1647.1 841 100.0
Ca_26183_v3 Cicer arietinum L. HOM05D009973 ORTHO05D016647 3.6e-115 420.2 214 100.0
arahy.Tifrunner.gnm1.ann1.KA0YEF Arachis hypogaea HOM05D009973 ORTHO05D014067 4.0e-53 214.2 198 60.1
arahy.Tifrunner.gnm1.ann1.QER9M9 Arachis hypogaea HOM05D009973 ORTHO05D014067 2.4e-50 204.9 211 56.4
arahy.Tifrunner.gnm1.ann1.MHL9FJ Arachis hypogaea HOM05D009973 ORTHO05D014067 5.0e-48 197.2 244 49.2
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 2.6e-44 184.9 98 100.0
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 4.7e-38 164.1 91 96.7
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 8.0e-38 163.3 89 98.9
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 8.0e-38 163.3 89 98.9
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 8.0e-38 163.3 89 98.9
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 8.0e-38 163.3 89 98.9
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 1.8e-37 162.2 89 97.8
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 1.8e-37 162.2 89 97.8
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 1.8e-37 162.2 89 97.8
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 1.8e-37 162.2 89 97.8
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 2.3e-37 161.8 89 98.9
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 3.1e-37 161.4 90 97.8
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.1e-37 161.4 89 97.8
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.1e-37 161.4 89 97.8
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.1e-37 161.4 89 97.8
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 4.0e-37 161.0 89 97.8
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 4.0e-37 161.0 89 97.8
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 4.0e-37 161.0 89 97.8
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 4.0e-37 161.0 89 97.8
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 4.0e-37 161.0 89 97.8
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 4.0e-37 161.0 89 97.8
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 4.0e-37 161.0 89 97.8
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 6.8e-37 160.2 90 96.7
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.2e-36 159.5 89 97.8
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 2.0e-36 158.7 89 96.6
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 2.0e-36 158.7 89 96.6
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 4.4e-36 157.5 89 95.5
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 4.4e-36 157.5 89 95.5
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 4.4e-36 157.5 90 95.6
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 4.4e-36 157.5 90 95.6
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 4.4e-36 157.5 89 95.5
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 4.4e-36 157.5 89 95.5
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 5.8e-36 157.1 89 95.5
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 1.3e-35 156.0 90 94.4
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 4.9e-35 154.1 89 93.3
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 6.4e-35 153.7 89 94.4
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 6.4e-35 153.7 89 94.4
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 6.4e-35 153.7 89 94.4
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 8.3e-35 153.3 89 93.3
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 8.3e-35 153.3 90 93.3
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 8.3e-35 153.3 90 93.3
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 1.4e-34 152.5 90 91.1
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 2.4e-34 151.8 89 94.4
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 3.2e-34 151.4 89 93.3
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 3.2e-34 151.4 89 93.3
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 3.2e-34 151.4 89 93.3
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.2e-34 151.4 89 93.3
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.0e-33 147.1 89 88.8
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-32 146.0 89 89.9
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.7e-32 145.6 89 89.9
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 6.6e-32 143.7 89 89.9
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.3e-31 141.4 106 75.5
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.3e-31 140.2 90 84.4
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 3.6e-30 137.9 89 87.6
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 3.6e-30 137.9 81 91.4
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 4.7e-30 137.5 89 83.1
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 8.0e-30 136.7 74 97.3
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 8.0e-30 136.7 89 86.5
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.2e-29 134.0 90 82.2
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.8e-29 133.7 90 83.3
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 4.4e-28 131.0 74 93.2
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.3e-27 129.4 89 80.9
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.6e-25 122.5 79 86.1
SGA_v2.0_scaffold255G45258 Striga asiatica HOM05D009973 ORTHO05D014067 1.1e-23 116.3 88 71.6
TPR.G23948 Trifolium pratense HOM05D009973 ORTHO05D009794 1.2e-22 112.8 64 89.1
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 2.1e-22 112.1 89 73.0
TPR.G39781 Trifolium pratense HOM05D009973 ORTHO05D016647 3.1e-21 108.2 58 94.8
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 2.0e-20 105.5 98 66.3
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.4e-18 99.4 71 83.1
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 7.1e-18 97.1 90 64.4
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 1.3e-16 92.8 58 86.2
TPR.G507 Trifolium pratense HOM05D009973 ORTHO05D014067 5.1e-16 90.9 43 95.3
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.6e-16 90.5 64 78.1
Gohir.A01G022300 Gossypium hirsutum HOM05D009973 ORTHO05D016647 3.3e-15 88.2 51 88.2
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 2.8e-14 85.1 45 100.0
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 5.2e-13 80.9 47 91.5
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 6.8e-13 80.5 51 84.3
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 8.9e-13 80.1 45 95.6
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 1.3e-11 76.3 44 93.2
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 4.9e-11 74.3 45 82.2
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 4.2e-10 71.2 37 91.9
arahy.Tifrunner.gnm1.ann1.AG7AS6 Arachis hypogaea HOM05D009973 ORTHO05D016647 5.4e-10 70.9 40 90.0
arahy.Tifrunner.gnm1.ann1.UR1PAI Arachis hypogaea HOM05D009973 ORTHO05D016647 5.4e-10 70.9 40 90.0
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 5.4e-10 70.9 89 57.3
TPR.G40788 Trifolium pratense HOM05D009973 ORTHO05D014067 5.4e-10 70.9 36 97.2
Psat0s48g0040 Pisum sativum HOM05D011036 ORTHO05D012577 1.6e-09 69.3 36 94.4
Gorai.005G104000 Gossypium raimondii HOM05D009973 ORTHO05D016647 2.1e-09 68.9 39 87.2
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 2.7e-09 68.6 40 95.0
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 3.5e-09 68.2 37 89.2
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 3.5e-09 68.2 37 89.2
Psat0s922g0160 Pisum sativum HOM05D009973 ORTHO05D326974 3.5e-09 68.2 36 83.3
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.0e-08 66.6 36 94.4
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.0e-08 66.6 36 94.4
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 1.0e-08 66.6 36 94.4
Peaxi162Scf00122g00065 Petunia axillaris HOM05D001560 ORTHO05D003613 1.3e-08 66.2 32 100.0
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 3.9e-08 64.7 40 85.0
QL09p021570 Quercus lobata HOM05D009973 ORTHO05D014067 5.6e-07 60.8 37 78.4
Nitab4.5_0000031g0170 Nicotiana tabacum HOM05D011554 ORTHO05D019309 2.1e-06 58.9 31 87.1
Peaxi162Scf00651g00635 Petunia axillaris HOM05D011554 ORTHO05D012577 2.1e-06 58.9 31 87.1
Sopen05g027050 Solanum pennellii HOM05D001987 ORTHO05D004018 2.1e-06 58.9 31 87.1
Migut.M00427 Erythranthe guttata HOM05D011554 ORTHO05D014067 2.8e-06 58.5 31 83.9
PGSC0003DMG400009701 Solanum tuberosum HOM05D011554 ORTHO05D014067 6.2e-06 57.4 31 83.9
Nitab4.5_0017902g0040 Nicotiana tabacum HOM05D011554 ORTHO05D014067 8.1e-06 57.0 31 83.9


User provided reference genes

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