Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.4e-136 489.6 242 100.0
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.4e-136 489.6 242 100.0
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 2.4e-83 312.8 200 82.0
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 4.2e-72 275.4 241 63.9
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 3.5e-71 272.3 225 68.9
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 4.2e-64 248.8 210 67.1
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 1.3e-60 237.3 189 68.8
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 3.1e-59 232.6 127 91.3
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 3.1e-59 232.6 127 91.3
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 3.1e-59 232.6 127 91.3
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 3.1e-59 232.6 127 91.3
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.0e-57 227.6 136 86.0
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 8.2e-44 181.4 89 97.8
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 1.5e-42 177.2 92 92.4
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 4.2e-40 169.1 89 91.0
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 2.7e-39 166.4 80 97.5
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 7.9e-39 164.9 89 89.9
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 5.1e-38 162.2 123 72.4
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 4.4e-37 159.1 83 92.8
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 9.7e-37 157.9 189 50.8
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.3e-36 157.5 200 52.5
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 5.3e-35 152.1 124 69.4
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 4.5e-34 149.1 94 83.0
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 7.7e-34 148.3 94 81.9
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 1.3e-33 147.5 91 83.5
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 6.5e-33 145.2 79 92.4
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 2.5e-32 143.3 87 85.1
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.2e-32 141.7 122 64.8
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.6e-31 139.4 119 67.2
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 6.1e-31 138.7 80 86.2
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 8.8e-30 134.8 150 55.3
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 2.6e-29 133.3 168 53.0
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 5.7e-29 132.1 67 92.5
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 2.8e-28 129.8 76 82.9
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 3.1e-27 126.3 236 40.3
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 9.1e-27 124.8 65 89.2
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 4.5e-26 122.5 89 71.9
Oeu048363.1 Olea europaea HOM05D000963 ORTHO05D018542 7.7e-26 121.7 146 52.7
arahy.Tifrunner.gnm1.ann1.UXAL1K Arachis hypogaea HOM05D000963 ORTHO05D011117 6.5e-25 118.6 114 61.4
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 7.2e-24 115.2 154 52.6
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.1e-23 113.6 88 68.2
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 3.6e-23 112.8 167 43.7
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 6.1e-23 112.1 164 43.9
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 8.0e-23 111.7 64 82.8
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 4.0e-22 109.4 120 53.3
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.0e-21 107.1 120 52.5
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 3.4e-21 106.3 59 86.4
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 3.4e-21 106.3 59 86.4
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 3.4e-21 106.3 59 86.4
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 3.4e-21 106.3 59 86.4
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 3.4e-21 106.3 59 86.4
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 5.7e-21 105.5 56 89.3
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 7.5e-21 105.1 139 48.2
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 4.1e-19 99.4 49 95.9
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 1.6e-18 97.4 58 81.0
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 1.6e-18 97.4 79 72.2
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 6.5e-17 92.0 153 43.8
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.9e-16 90.5 153 43.1
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 1.6e-15 87.4 47 91.5
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 1.6e-15 87.4 47 91.5
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.6e-15 87.4 47 91.5
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.1e-15 87.0 154 43.5
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 3.6e-15 86.3 45 93.3
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 4.7e-15 85.9 44 95.5
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 4.7e-15 85.9 44 95.5
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 8.0e-15 85.1 44 93.2
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 8.0e-15 85.1 44 93.2
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.0e-15 85.1 44 93.2
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.0e-15 85.1 44 93.2
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 8.0e-15 85.1 47 89.4
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 8.0e-15 85.1 44 93.2
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 8.0e-15 85.1 44 93.2
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 1.0e-14 84.7 47 89.4
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 1.8e-14 84.0 51 82.4
EL10Ac6g15367 Beta vulgaris HOM05D000963 ORTHO05D011117 1.8e-14 84.0 71 66.2
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.8e-14 81.6 44 88.6
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 8.8e-14 81.6 43 88.4
FAN10G3847 Fragaria x ananassa HOM05D000367 ORTHO05D001227 1.5e-13 80.9 50 80.0
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.4e-13 79.7 44 88.6
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 4.4e-13 79.3 44 88.6
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 4.4e-13 79.3 61 68.9
TPR.G8529 Trifolium pratense HOM05D000060 ORTHO05D000082 9.8e-13 78.2 54 75.9
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.8e-12 76.6 41 90.2
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 6.3e-12 75.5 44 81.8
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.1e-11 74.7 46 78.3
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.1e-11 74.7 47 80.9
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.4e-11 74.3 96 49.0
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.4e-11 73.6 46 78.3
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 2.4e-11 73.6 44 84.1
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 4.1e-11 72.8 44 84.1
CDE02G2642 Ceratophyllum demersum HOM05D000963 ORTHO05D005131 7.0e-11 72.0 69 59.4
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.0e-11 72.0 47 74.5
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.2e-10 71.2 132 42.4
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 1.6e-10 70.9 46 73.9
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 2.7e-10 70.1 40 87.5
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 4.5e-10 69.3 44 79.5
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 7.7e-10 68.6 46 73.9
arahy.Tifrunner.gnm1.ann1.URY1CV Arachis hypogaea HOM05D000533 ORTHO05D011117 1.7e-09 67.4 36 94.4
BcaC04g20703 Brassica carinata HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
BcaC04g20780 Brassica carinata HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
BcaNung07084 Brassica carinata HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
C04p22530 Brassica napus HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
C09p24690 Brassica napus HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
C09p39370 Brassica napus HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
BolSC47t61068H Brassica oleracea HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
MELO3C027127.2 Cucumis melo HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
MELO3C033790.2 Cucumis melo HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.7e-09 67.4 36 94.4
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.7e-09 67.4 36 94.4
Sopen06g015040 Solanum pennellii HOM05D000963 ORTHO05D011117 1.7e-09 67.4 36 94.4
PGSC0003DMG400039021 Solanum tuberosum HOM05D000963 ORTHO05D010201 1.7e-09 67.4 36 94.4
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.7e-09 67.4 36 94.4
Oeu014166.1 Olea europaea HOM05D000963 ORTHO05D005131 5.0e-09 65.9 32 96.9
unitig_8.g4107 Utricularia gibba HOM05D000963 ORTHO05D011117 8.6e-09 65.1 36 91.7
Cpa.g.sc2719.1 Carica papaya HOM05D000963 ORTHO05D011117 1.1e-08 64.7 33 97.0
BolSC46t60969H Brassica oleracea HOM05D000963 ORTHO05D005131 1.5e-08 64.3 32 96.9
Gorai.008G144300 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.9e-08 63.9 49 65.3
Sopen01g027140 Solanum pennellii HOM05D000963 ORTHO05D011117 1.9e-08 63.9 36 88.9
arahy.Tifrunner.gnm1.ann1.NK9AGX Arachis hypogaea HOM05D000089 ORTHO05D011117 2.5e-08 63.5 36 91.7
Oeu038562.1 Olea europaea HOM05D000963 ORTHO05D011117 4.3e-08 62.8 36 88.9
BraSC138t45525Z Brassica rapa HOM05D000963 ORTHO05D011117 1.2e-07 61.2 36 88.9
Medtr4g076920 Medicago truncatula HOM05D008922 ORTHO05D010978 1.6e-07 60.8 50 62.0
TAR629G1823 Trochodendron aralioides HOM05D001041 ORTHO05D000846 1.6e-07 60.8 36 83.3
arahy.Tifrunner.gnm1.ann1.BMCQ1I Arachis hypogaea HOM05D000963 ORTHO05D005131 3.6e-07 59.7 120 40.0
Sc08g0004380 Simmondsia chinensis HOM05D000963 ORTHO05D011117 3.6e-07 59.7 85 45.9
vmacro21330 Vaccinium macrocarpon HOM05D000963 ORTHO05D014445 3.6e-07 59.7 43 76.7
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 4.7e-07 59.3 156 34.6
BraA07t28395Z Brassica rapa HOM05D000963 ORTHO05D005131 6.1e-07 58.9 58 56.9
arahy.Tifrunner.gnm1.ann1.G70FPN Arachis hypogaea HOM05D000963 ORTHO05D005131 8.0e-07 58.5 49 63.3
Hma1.2p1_0016F.1_g010990 Hydrangea macrophylla HOM05D000963 ORTHO05D011117 8.0e-07 58.5 36 83.3
Gorai.001G044400 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.0e-06 58.2 43 60.5
Gohir.D07G041825 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.4e-06 57.8 65 44.6
CSS0012622 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D011117 1.8e-06 57.4 36 83.3
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.0e-06 56.6 47 63.8
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.0e-06 56.6 44 63.6
Gohir.A12G129550 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.0e-06 56.2 37 70.3
Gohir.D12G186150 Gossypium hirsutum HOM05D000963 ORTHO05D011117 6.8e-06 55.5 36 77.8
SHI36891 Sapria himalayana HOM05D000963 ORTHO05D011117 6.8e-06 55.5 29 93.1


User provided reference genes

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