Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 0.0e+00 1313.5 671 100.0
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 1.9e-66 258.1 128 99.2
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 2.8e-65 254.2 128 97.7
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 6.4e-62 243.0 128 94.5
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 7.8e-60 236.1 128 91.4
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 9.5e-58 229.2 126 90.5
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 8.0e-57 226.1 126 88.9
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 1.8e-56 224.9 126 88.9
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 5.2e-56 223.4 126 88.1
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 6.8e-56 223.0 126 88.1
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 2.6e-55 221.1 126 87.3
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 5.8e-55 219.9 126 87.3
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 1.3e-54 218.8 126 85.7
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.7e-54 218.4 127 85.8
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 6.4e-54 216.5 126 86.5
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 1.1e-53 215.7 126 84.9
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 1.1e-53 215.7 128 85.2
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 3.2e-53 214.2 126 84.1
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 3.2e-53 214.2 126 84.1
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 1.6e-52 211.8 126 83.3
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 2.1e-52 211.5 123 84.6
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 8.6e-51 206.1 126 83.3
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 6.2e-49 199.9 126 79.4
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 4.0e-48 197.2 128 80.5
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 8.9e-48 196.1 130 80.0
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 8.9e-48 196.1 130 80.0
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 8.9e-48 196.1 130 80.0
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.9e-48 196.1 127 77.2
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 2.6e-47 194.5 130 79.2
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 2.6e-47 194.5 130 79.2
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 4.4e-47 193.7 124 81.5
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.3e-46 192.2 115 83.5
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 2.9e-46 191.0 130 78.5
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 1.4e-45 188.7 130 76.9
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.3e-43 182.2 129 76.7
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 2.5e-42 177.9 120 76.7
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.2e-40 170.2 133 69.9
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 2.8e-33 147.9 90 80.0
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 6.2e-33 146.7 110 70.9
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.9e-32 143.3 112 67.0
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 1.5e-31 142.1 74 89.2
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 2.2e-30 138.3 83 83.1
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 1.9e-29 135.2 102 68.6
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 7.9e-28 129.8 75 88.0
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.3e-27 129.0 137 54.7
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 6.6e-27 126.7 82 78.0
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 4.5e-23 114.0 69 79.7
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 2.9e-22 111.3 73 75.3
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.6e-20 105.5 72 75.0
Psat1g120720 Pisum sativum HOM05D000743 ORTHO05D000580 1.0e-19 102.8 139 46.8
PGSC0003DMG400013141 Solanum tuberosum HOM05D007924 ORTHO05D010328 1.9e-18 98.6 58 81.0
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 2.5e-18 98.2 56 85.7
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 4.3e-18 97.4 63 77.8
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 8.1e-17 93.2 170 40.0
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 2.4e-16 91.7 56 82.1
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.4e-15 87.8 58 74.1
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 1.9e-13 82.0 88 60.2
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 7.1e-13 80.1 39 87.2
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 7.1e-13 80.1 39 87.2
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 7.1e-13 80.1 39 87.2
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 3.5e-12 77.8 33 97.0
Psat6g041360 Pisum sativum HOM05D004291 ORTHO05D007972 4.6e-12 77.4 74 64.9
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 3.9e-11 74.3 221 30.8
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 3.9e-11 74.3 221 30.8
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.1e-10 72.8 52 71.2
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 1.5e-10 72.4 51 68.6
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 1.5e-10 72.4 51 68.6
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 2.1e-09 68.6 51 64.7
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.8e-09 67.4 44 77.3
Lj2A1231T102 Lonicera japonica HOM05D000743 ORTHO05D000580 1.1e-08 66.2 88 45.5
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 1.1e-08 66.2 56 58.9
Lj2P1221T104 Lonicera japonica HOM05D014754 ORTHO05D017434 3.1e-08 64.7 94 44.7
FvH4_2g28560 Fragaria vesca HOM05D014754 ORTHO05D017434 6.9e-08 63.5 156 33.3
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 4.5e-07 60.8 154 33.8
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 2.9e-06 58.2 166 33.1
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.9e-06 58.2 41 75.6
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 2.9e-06 58.2 30 96.7
Cc00_g01730 Coffea canephora HOM05D014754 ORTHO05D017434 8.4e-06 56.6 76 40.8


User provided reference genes

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