Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03767_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 1.7e-100 369.4 192 100.0
Ca_12697_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 5.4e-91 337.8 192 89.6
Ca_28512_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 5.1e-81 304.7 166 92.2
Ca_31240_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 9.9e-77 290.4 192 82.8
Ca_28195_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 1.9e-75 286.2 168 90.5
Ca_23710_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 6.9e-62 241.1 132 93.2
TPR.G27910 Trifolium pratense HOM05D009128 ORTHO05D011389 3.9e-57 225.3 196 60.7
Ca_14150_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 4.3e-56 221.9 190 67.4
Peaxi162Scf00206g01515 Petunia axillaris HOM05D009128 ORTHO05D011389 7.7e-53 211.1 194 60.3
Peaxi162Scf00116g00003 Petunia axillaris HOM05D009128 ORTHO05D011389 7.2e-51 204.5 202 56.4
Peaxi162Scf00238g00610 Petunia axillaris HOM05D009128 ORTHO05D011389 2.1e-50 203.0 202 56.4
Peaxi162Scf00299g00004 Petunia axillaris HOM05D009128 ORTHO05D011389 6.5e-44 181.4 188 55.9
Ca_05874_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 4.2e-43 178.7 133 73.7
Peaxi162Scf01294g00128 Petunia axillaris HOM05D009128 ORTHO05D011389 8.8e-41 171.0 195 53.8
Solyc04g024880.3 Solanum lycopersicum HOM05D009128 ORTHO05D011389 2.1e-34 149.8 168 50.6
Lalb_Chr21g0312571 Lupinus albus HOM05D009128 ORTHO05D011389 4.1e-30 135.6 157 46.5
Medtr4g026570 Medicago truncatula HOM05D009128 ORTHO05D011389 5.5e-27 125.2 129 51.9
Peaxi162Scf00304g00124 Petunia axillaris HOM05D009128 ORTHO05D011389 4.0e-25 119.0 126 53.2
Ca_28394_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 2.7e-21 106.3 58 93.1
PGSC0003DMG400046551 Solanum tuberosum HOM05D009128 ORTHO05D011389 3.0e-17 92.8 143 44.1
Peaxi162Scf00138g00153 Petunia axillaris HOM05D009128 ORTHO05D011389 7.5e-16 88.2 112 46.4
PGSC0003DMG400040822 Solanum tuberosum HOM05D009128 ORTHO05D037686 7.5e-16 88.2 115 44.3
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 3.7e-15 85.9 178 31.5
Peaxi162Scf00085g00185 Petunia axillaris HOM05D009128 ORTHO05D011389 8.3e-15 84.7 116 47.4
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 4.1e-14 82.4 178 30.9
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 1.6e-13 80.5 192 29.2
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 7.8e-13 78.2 178 29.8
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.0e-12 77.8 183 31.1
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 3.8e-12 75.9 178 33.7
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 5.0e-12 75.5 171 30.4
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 5.0e-12 75.5 137 36.5
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 8.6e-12 74.7 137 37.2
Peaxi162Scf00485g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 1.1e-11 74.3 201 31.8
Phvul.003G087300 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 1.1e-11 74.3 194 29.4
Psat0s2772g0080 Pisum sativum HOM05D002954 ORTHO05D003353 1.5e-11 73.9 179 33.0
CAN.G251.4 Capsicum annuum HOM05D009128 ORTHO05D011389 2.5e-11 73.2 107 43.9
Lj1g0003177 Lotus japonicus HOM05D002954 ORTHO05D003353 3.3e-11 72.8 109 43.1
Sopen09g020910 Solanum pennellii HOM05D002954 ORTHO05D003353 5.6e-11 72.0 124 32.3
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 9.5e-11 71.2 183 28.4
Solyc10g061955.1 Solanum lycopersicum HOM05D009128 ORTHO05D011389 9.5e-11 71.2 59 61.0
Psat5g237440 Pisum sativum HOM05D002954 ORTHO05D003353 1.2e-10 70.9 182 29.1
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 1.6e-10 70.5 179 32.4
Peaxi162Scf00301g00021 Petunia axillaris HOM05D009128 ORTHO05D011389 2.1e-10 70.1 105 41.9
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 2.8e-10 69.7 115 33.0
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 3.6e-10 69.3 186 30.1
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 6.1e-10 68.6 123 35.8
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 8.0e-10 68.2 179 31.8
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 8.0e-10 68.2 163 31.3
COL.COLO4_29219 Corchorus olitorius HOM05D001309 ORTHO05D000385 3.1e-09 66.2 145 31.7
Nitab4.5_0000229g0050 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.1e-09 66.2 121 36.4
Nitab4.5_0002430g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.1e-09 66.2 184 28.3
PGSC0003DMG400036508 Solanum tuberosum HOM05D009128 ORTHO05D011389 5.2e-09 65.5 55 56.4
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 8.9e-09 64.7 168 28.6
Nitab4.5_0000416g0230 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.9e-09 64.7 121 38.8
arahy.Tifrunner.gnm1.ann1.H1PTY0 Arachis hypogaea HOM05D002954 ORTHO05D010308 1.2e-08 64.3 118 33.1
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 1.2e-08 64.3 183 29.0
Nitab4.5_0000002g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.5e-08 63.9 128 35.2
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 1.5e-08 63.9 108 38.0
Nitab4.5_0001076g0100 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.4e-08 62.4 109 35.8
Nitab4.5_0007501g0010 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.4e-08 62.4 122 36.1
arahy.Tifrunner.gnm1.ann1.B3S8NN Arachis hypogaea HOM05D002954 ORTHO05D003353 7.5e-08 61.6 115 32.2
Nitab4.5_0000051g0340 Nicotiana tabacum HOM05D002954 ORTHO05D003353 7.5e-08 61.6 124 33.1
Peaxi162Scf00002g05111 Petunia axillaris HOM05D002954 ORTHO05D003353 7.5e-08 61.6 109 38.5
Sopen04g020530 Solanum pennellii HOM05D002954 ORTHO05D003353 7.5e-08 61.6 100 40.0
Sopen11g015860 Solanum pennellii HOM05D002954 ORTHO05D003353 9.8e-08 61.2 100 39.0
Psat3g100040 Pisum sativum HOM05D002954 ORTHO05D003353 1.3e-07 60.8 157 31.8
Phvul.008G149000 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 1.7e-07 60.5 171 25.7
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 2.9e-07 59.7 161 31.1
arahy.Tifrunner.gnm1.ann1.C5M9FF Arachis hypogaea HOM05D002954 ORTHO05D000385 3.7e-07 59.3 185 25.9
Solyc11g042920.3 Solanum lycopersicum HOM05D009128 ORTHO05D011389 4.9e-07 58.9 68 45.6
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 8.3e-07 58.2 120 35.8
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.3e-07 58.2 116 33.6
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 8.3e-07 58.2 149 30.9
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 8.3e-07 58.2 149 30.9
ClCG06G005780 Citrullus lanatus HOM05D001309 ORTHO05D000385 8.3e-07 58.2 92 43.5
Nitab4.5_0000386g0150 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.3e-07 58.2 100 41.0
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 1.1e-06 57.8 115 34.8
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 1.1e-06 57.8 149 30.2
Nitab4.5_0000817g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.1e-06 57.8 104 33.7
arahy.Tifrunner.gnm1.ann1.DXNF3X Arachis hypogaea HOM05D002954 ORTHO05D003353 1.4e-06 57.4 106 32.1
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 1.9e-06 57.0 149 29.5
Nitab4.5_0003353g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.9e-06 57.0 88 38.6
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.9e-06 57.0 145 33.8
VMungo1309G2137 Vigna mungo HOM05D000006 ORTHO05D000001 1.9e-06 57.0 104 31.7
arahy.Tifrunner.gnm1.ann1.LE5ID3 Arachis hypogaea HOM05D009662 ORTHO05D003353 2.4e-06 56.6 136 28.7
Lalb_Chr22g0361071 Lupinus albus HOM05D002954 ORTHO05D003353 2.4e-06 56.6 135 30.4
COL.COLO4_06576 Corchorus olitorius HOM05D001309 ORTHO05D000385 3.2e-06 56.2 125 30.4
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 3.2e-06 56.2 181 28.2
Nitab4.5_0003410g0070 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.2e-06 56.2 87 40.2
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.1e-06 55.8 190 26.8
Peaxi162Scf00318g00919 Petunia axillaris HOM05D002954 ORTHO05D003353 4.1e-06 55.8 186 28.0
MBI01_g25649_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.4e-06 55.5 149 28.9
Nitab4.5_0000140g0170 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.4e-06 55.5 86 39.5
Sopen01g012120 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 55.5 138 30.4
Nitab4.5_0003879g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 7.0e-06 55.1 115 34.8
Peaxi162Scf00016g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 7.0e-06 55.1 128 31.2
Peaxi162Scf00173g00019 Petunia axillaris HOM05D002954 ORTHO05D003353 7.0e-06 55.1 128 31.2
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 7.0e-06 55.1 105 34.3
COL.COLO4_33862 Corchorus olitorius HOM05D001309 ORTHO05D000385 9.2e-06 54.7 166 28.3


User provided reference genes

Program Settings