Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03760_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 8.7e-32 139.8 77 100.0
Ca_03759_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 1.3e-27 125.9 77 93.5
Medtr4g021730 Medicago truncatula HOM05D002160 ORTHO05D002012 4.2e-26 120.9 77 89.6
Psat7g239160 Pisum sativum HOM05D002160 ORTHO05D002012 1.0e-24 116.3 77 85.7
Medtr4g021725 Medicago truncatula HOM05D002160 ORTHO05D002012 1.5e-23 112.5 77 83.1
TPR.G5610 Trifolium pratense HOM05D002160 ORTHO05D002012 3.4e-20 101.3 83 75.9
Glyma.17G230500 Glycine max HOM05D002160 ORTHO05D002012 1.4e-18 95.9 77 75.3
Glyma.14G093100 Glycine max HOM05D002160 ORTHO05D002012 5.5e-18 94.0 77 75.3
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 7.4e-15 83.6 53 69.8
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 9.7e-15 83.2 53 69.8
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.3e-14 82.8 74 60.8
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 1.8e-13 79.0 81 60.5
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 1.8e-13 79.0 75 64.0
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.1e-13 77.8 74 62.2
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 4.1e-13 77.8 74 62.2
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 4.1e-13 77.8 44 72.7
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 5.3e-13 77.4 75 62.7
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 5.3e-13 77.4 74 58.1
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.5e-12 75.9 74 59.5
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 2.0e-12 75.5 74 59.5
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 2.0e-12 75.5 74 59.5
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 2.6e-12 75.1 45 71.1
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 2.6e-12 75.1 53 62.3
Lalb_Chr12g0210241 Lupinus albus HOM05D002160 ORTHO05D002012 3.4e-12 74.7 76 59.2
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 3.4e-12 74.7 74 55.4
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 4.5e-12 74.3 50 64.0
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 4.5e-12 74.3 77 63.6
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.9e-12 73.9 77 50.6
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 7.7e-12 73.6 51 66.7
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.0e-11 73.2 53 64.2
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 1.0e-11 73.2 53 64.2
Phvul.L001645 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 1.0e-11 73.2 75 65.3
Phvul.L001745 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 1.0e-11 73.2 75 65.3
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.0e-11 73.2 45 68.9
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.3e-11 72.8 82 58.5
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.3e-11 72.8 82 58.5
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.7e-11 72.4 52 61.5
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 2.2e-11 72.0 45 68.9
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.9e-11 71.6 45 71.1
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.9e-11 71.6 53 64.2
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.9e-11 71.6 53 64.2
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 2.9e-11 71.6 53 62.3
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 3.8e-11 71.2 53 66.0
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 5.0e-11 70.9 45 73.3
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 6.5e-11 70.5 58 56.9
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 6.5e-11 70.5 74 56.8
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 8.5e-11 70.1 45 73.3
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 8.5e-11 70.1 49 65.3
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 1.1e-10 69.7 74 55.4
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.1e-10 69.7 53 67.9
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.4e-10 69.3 74 51.4
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.4e-10 69.3 53 67.9
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 1.4e-10 69.3 53 64.2
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 1.4e-10 69.3 56 62.5
TPR.G5642 Trifolium pratense HOM05D002160 ORTHO05D002012 1.4e-10 69.3 77 67.5
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.4e-10 69.3 45 71.1
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.9e-10 68.9 53 62.3
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 1.9e-10 68.9 77 54.5
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 2.5e-10 68.6 45 66.7
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 3.2e-10 68.2 45 66.7
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 3.2e-10 68.2 53 60.4
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 3.2e-10 68.2 61 55.7
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 4.2e-10 67.8 53 66.0
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 5.5e-10 67.4 72 58.3
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 5.5e-10 67.4 55 61.8
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 7.2e-10 67.0 54 66.7
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 9.4e-10 66.6 45 68.9
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.2e-09 66.2 51 58.8
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 1.2e-09 66.2 54 63.0
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.2e-09 66.2 59 57.6
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.2e-09 66.2 53 58.5
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 1.2e-09 66.2 51 62.7
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 1.2e-09 66.2 76 56.6
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.1e-09 65.5 53 56.6
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 2.1e-09 65.5 45 66.7
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.7e-09 65.1 53 56.6
Glyma.03G082100 Glycine max HOM05D002160 ORTHO05D002012 2.7e-09 65.1 77 63.6
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 3.6e-09 64.7 45 68.9
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 4.6e-09 64.3 72 56.9
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.9e-09 63.5 77 46.8
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 1.0e-08 63.2 47 66.0
Prupe.6G077900 Prunus persica HOM05D002160 ORTHO05D002012 1.0e-08 63.2 72 55.6
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.8e-08 62.4 79 60.8
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 1.8e-08 62.4 75 46.7
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 1.8e-08 62.4 50 60.0
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 2.3e-08 62.0 48 62.5
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.3e-08 62.0 45 62.2
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 3.0e-08 61.6 47 61.7
MD16G1208900 Malus domestica HOM05D002160 ORTHO05D002012 3.0e-08 61.6 80 46.2
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.0e-08 61.6 45 60.0
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.0e-08 61.6 45 60.0
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 3.9e-08 61.2 51 51.0
Lj3g0006632 Lotus japonicus HOM05D002160 ORTHO05D002012 3.9e-08 61.2 77 58.4
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.9e-08 61.2 45 55.6
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 3.9e-08 61.2 45 64.4
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 5.1e-08 60.8 53 56.6
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.1e-08 60.8 53 52.8
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 6.7e-08 60.5 45 60.0
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 8.8e-08 60.1 56 51.8
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 8.8e-08 60.1 54 55.6
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 8.8e-08 60.1 53 54.7
COL.COLO4_19168 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.1e-07 59.7 56 50.0
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 1.1e-07 59.7 48 58.3
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 1.1e-07 59.7 48 58.3
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 1.1e-07 59.7 48 58.3
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.1e-07 59.7 43 62.8
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 1.1e-07 59.7 44 63.6
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.1e-07 59.7 52 51.9
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 1.1e-07 59.7 52 51.9
Zm00001eb124380 Zea mays HOM05D002160 ORTHO05D002012 1.5e-07 59.3 45 60.0
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 2.0e-07 58.9 75 52.0
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 2.0e-07 58.9 44 63.6
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 2.6e-07 58.5 53 50.9
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.6e-07 58.5 43 60.5
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 2.6e-07 58.5 47 55.3
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 3.3e-07 58.2 45 55.6
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 3.3e-07 58.2 45 57.8
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 3.3e-07 58.2 74 43.2
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 3.3e-07 58.2 52 51.9
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 4.4e-07 57.8 53 50.9
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 4.4e-07 57.8 53 54.7
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.4e-07 57.8 45 60.0
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 4.4e-07 57.8 46 60.9
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 5.7e-07 57.4 48 56.2
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 7.4e-07 57.0 52 46.2
Zm00001eb335880 Zea mays HOM05D002160 ORTHO05D002012 7.4e-07 57.0 44 54.5
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 9.7e-07 56.6 75 42.7
CANSAT54G1607 Cannabis sativa HOM05D002160 ORTHO05D002012 1.7e-06 55.8 65 58.5
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 52 55.8
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.7e-06 55.8 54 48.1
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 2.2e-06 55.5 75 42.7
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 2.2e-06 55.5 49 55.1
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 2.2e-06 55.5 49 55.1
Migut.J00330 Erythranthe guttata HOM05D002160 ORTHO05D002012 2.2e-06 55.5 53 50.9
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.2e-06 55.5 79 53.2
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 2.8e-06 55.1 54 53.7
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 2.8e-06 55.1 47 51.1
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 4.8e-06 54.3 45 62.2
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 6.3e-06 53.9 50 60.0
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 6.3e-06 53.9 76 42.1
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 6.3e-06 53.9 76 42.1
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 6.3e-06 53.9 54 51.9
CDE02G2904 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 6.3e-06 53.9 48 52.1
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 6.3e-06 53.9 45 60.0
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 6.3e-06 53.9 47 59.6
PGR102G1600 Punica granatum HOM05D002160 ORTHO05D002012 6.3e-06 53.9 78 53.8
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 8.2e-06 53.5 75 50.7
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 8.2e-06 53.5 75 40.0
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 8.2e-06 53.5 75 40.0
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 8.2e-06 53.5 45 62.2
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 8.2e-06 53.5 72 51.4


User provided reference genes

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