Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 7.6e-250 866.7 432 100.0
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 2.1e-199 699.1 427 82.4
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 1.1e-197 693.3 427 80.6
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 1.2e-181 640.2 427 75.4
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 3.8e-177 625.2 392 82.7
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 1.5e-165 586.6 428 69.2
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 2.7e-162 575.9 428 69.4
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 1.0e-161 573.9 427 69.3
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 1.7e-156 556.6 432 66.2
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 2.4e-155 552.7 432 65.7
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 5.2e-150 535.0 340 79.4
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 5.4e-147 525.0 368 73.6
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 7.8e-122 441.4 431 55.2
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 1.7e-121 440.3 436 53.9
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 4.3e-120 435.6 423 56.3
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 9.9e-117 424.5 430 52.8
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 1.7e-116 423.7 429 53.4
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 4.6e-114 415.6 429 51.3
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 6.7e-113 411.8 432 51.4
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 1.1e-112 411.0 438 50.0
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 6.9e-110 401.7 437 50.1
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 2.6e-109 399.8 444 50.0
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 2.6e-109 399.8 427 50.1
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 5.8e-109 398.7 432 50.5
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 2.9e-108 396.4 431 49.7
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 4.9e-108 395.6 431 50.6
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 6.5e-108 395.2 430 49.5
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 1.4e-107 394.0 428 49.8
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 4.2e-107 392.5 430 50.0
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 5.5e-107 392.1 461 46.2
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 2.1e-106 390.2 405 52.1
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 1.0e-105 387.9 449 48.1
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 1.3e-105 387.5 427 51.1
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 6.7e-105 385.2 429 48.7
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 2.5e-104 383.3 428 50.0
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 3.3e-104 382.9 430 49.8
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 1.2e-101 374.4 445 46.1
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 7.6e-101 371.7 435 48.0
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 5.1e-97 359.0 428 47.0
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 8.2e-95 351.7 396 48.2
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 2.0e-93 347.1 430 43.5
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 1.9e-91 340.5 431 45.2
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 4.2e-91 339.3 426 43.4
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 1.4e-89 334.3 431 42.2
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 3.0e-89 333.2 432 43.5
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 5.1e-89 332.4 433 42.3
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 5.1e-89 332.4 379 47.8
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 6.7e-89 332.0 426 42.7
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 1.1e-88 331.3 431 44.3
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 5.7e-88 328.9 365 47.4
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 8.2e-87 325.1 448 40.6
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 1.4e-86 324.3 397 45.3
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 5.3e-86 322.4 434 44.5
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 6.9e-86 322.0 431 41.1
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 6.5e-84 315.5 431 41.5
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 1.4e-83 314.3 364 48.1
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 4.7e-82 309.3 501 36.5
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 1.7e-79 300.8 383 43.9
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 4.2e-75 286.2 378 42.9
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 2.1e-74 283.9 433 37.9
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 3.6e-74 283.1 430 42.1
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 1.1e-72 278.1 310 49.4
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 2.6e-72 276.9 431 39.2
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 1.6e-66 257.7 456 36.8
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 2.8e-63 246.9 461 35.8
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 8.3e-63 245.4 445 36.0
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.8e-57 227.6 272 46.3
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 3.6e-50 203.4 214 49.5
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 1.5e-48 198.0 258 40.7
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 1.1e-46 191.8 211 47.9
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 2.4e-46 190.7 229 48.0
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 4.6e-45 186.4 325 35.1
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 1.7e-44 184.5 262 39.7
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.7e-36 157.9 355 33.0
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 2.3e-36 157.5 163 45.4
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 2.6e-24 117.5 263 33.1
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 1.7e-23 114.8 86 59.3
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 6.6e-20 102.8 155 36.8
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 5.6e-19 99.8 77 61.0
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 5.6e-19 99.8 138 41.3
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 7.3e-19 99.4 80 58.8
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 6.0e-13 79.7 176 31.2
Hma1.2p1_0248F.1_g102080 Hydrangea macrophylla HOM05D003443 ORTHO05D009887 3.8e-07 60.5 36 72.2
Lsat_1_v5_gn_1_21640 Lactuca sativa HOM05D001068 ORTHO05D002190 1.9e-06 58.2 37 67.6
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 5.4e-06 56.6 47 51.1


User provided reference genes

Program Settings