Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 5.5e-56 220.7 109 100.0
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 5.7e-37 157.5 110 79.1
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 1.7e-36 156.0 110 77.3
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 1.5e-29 132.9 109 67.9
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 2.8e-28 128.6 107 67.3
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 2.8e-23 112.1 115 58.3
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 1.3e-20 103.2 93 67.7
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 8.3e-20 100.5 95 63.2
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 7.0e-19 97.4 90 63.3
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 1.2e-18 96.7 56 87.5
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 1.6e-18 96.3 92 59.8
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 2.0e-18 95.9 80 67.5
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 7.8e-18 94.0 69 72.5
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 1.3e-17 93.2 78 65.4
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 1.3e-17 93.2 69 72.5
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 2.3e-17 92.4 56 82.1
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 2.9e-17 92.0 108 53.7
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 2.9e-17 92.0 99 57.6
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 8.6e-17 90.5 57 82.5
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 1.1e-16 90.1 79 64.6
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 1.5e-16 89.7 92 59.8
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 1.5e-16 89.7 92 59.8
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 1.5e-16 89.7 76 67.1
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 1.5e-16 89.7 61 77.0
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 3.3e-16 88.6 82 63.4
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 3.3e-16 88.6 75 68.0
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 7.3e-16 87.4 80 61.2
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 7.3e-16 87.4 70 68.6
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 9.5e-16 87.0 95 54.7
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 1.2e-15 86.7 51 86.3
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 1.2e-15 86.7 108 47.2
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 1.2e-15 86.7 75 66.7
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 1.6e-15 86.3 57 77.2
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 1.6e-15 86.3 75 66.7
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 1.6e-15 86.3 75 66.7
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 1.6e-15 86.3 102 52.9
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 2.1e-15 85.9 85 57.6
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 2.8e-15 85.5 85 63.5
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 3.6e-15 85.1 73 65.8
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 4.7e-15 84.7 57 71.9
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 6.1e-15 84.3 73 61.6
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 8.0e-15 84.0 73 61.6
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 8.0e-15 84.0 80 62.5
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 1.0e-14 83.6 54 77.8
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 1.0e-14 83.6 62 72.6
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 1.4e-14 83.2 56 75.0
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 1.8e-14 82.8 49 81.6
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 2.3e-14 82.4 76 60.5
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 4.0e-14 81.6 81 55.6
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 5.2e-14 81.3 75 62.7
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 5.2e-14 81.3 54 77.8
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 5.2e-14 81.3 87 57.5
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 5.2e-14 81.3 81 60.5
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 6.8e-14 80.9 81 55.6
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 6.8e-14 80.9 81 55.6
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 6.8e-14 80.9 81 55.6
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 6.8e-14 80.9 122 46.7
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 8.9e-14 80.5 60 70.0
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 1.2e-13 80.1 54 77.8
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 1.5e-13 79.7 70 70.0
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 3.4e-13 78.6 78 55.1
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 4.4e-13 78.2 49 75.5
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 4.4e-13 78.2 49 75.5
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 6.4e-12 74.3 49 71.4
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 8.3e-12 73.9 109 46.8
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 8.3e-12 73.9 72 61.1
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 1.1e-11 73.6 66 59.1
MD05G1300500 Malus domestica HOM05D007991 ORTHO05D010158 1.4e-11 73.2 48 77.1
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 3.2e-11 72.0 72 59.7
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 7.0e-11 70.9 61 65.6
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 1.2e-10 70.1 56 67.9
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 1.6e-10 69.7 59 67.8
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 3.5e-10 68.6 82 51.2
Nn4g23994 Nelumbo nucifera HOM05D007991 ORTHO05D010158 3.9e-09 65.1 75 53.3
Os08g0104400 Oryza sativa ssp. japonica HOM05D007991 ORTHO05D010158 8.9e-06 53.9 64 43.8


User provided reference genes

Program Settings