Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 0.0e+00 2064.3 1016 100.0
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 0.0e+00 1787.3 1018 86.4
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 0.0e+00 1785.4 1021 86.2
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 0.0e+00 1781.9 1021 86.0
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 0.0e+00 1635.9 1020 79.8
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 0.0e+00 1615.1 1023 78.9
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 0.0e+00 1593.9 1013 77.5
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 0.0e+00 1516.9 1021 74.4
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 0.0e+00 1489.2 996 74.2
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 0.0e+00 1206.0 837 72.3
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 1087.0 990 54.7
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1079.3 1048 52.6
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 3.8e-308 1061.6 1018 51.8
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 8.4e-300 1033.9 1006 52.3
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 1.8e-297 1026.2 1007 51.7
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 6.9e-294 1014.2 1025 51.0
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 4.5e-293 1011.5 1021 50.5
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.0e-292 1010.4 1011 50.6
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 6.5e-292 1007.7 1024 50.1
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 4.2e-291 1005.0 1014 50.4
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 1.3e-287 993.4 1012 49.9
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 9.3e-283 977.2 994 50.4
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 1.8e-278 963.0 1019 50.4
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.0e-276 957.2 1014 48.6
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.5e-275 952.6 979 50.3
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 3.3e-272 942.2 1008 49.5
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 1.1e-270 937.2 1032 48.2
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.0e-269 932.9 979 49.6
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 1.9e-267 926.4 1019 48.0
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 5.5e-267 924.9 1025 48.3
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 7.9e-266 921.0 998 48.2
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 1.1e-259 900.6 1005 47.0
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 5.2e-257 891.7 977 48.3
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 7.0e-254 881.3 1014 46.3
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 1.0e-252 877.5 1020 46.7
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 7.2e-251 871.3 836 51.4
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 1.6e-250 870.2 1016 45.5
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 8.5e-244 847.8 1014 44.6
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 6.1e-242 841.6 992 44.8
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 1.8e-241 840.1 1005 43.8
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 6.8e-241 838.2 1023 45.1
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 4.4e-240 835.5 1003 44.7
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 6.3e-239 831.6 1014 44.3
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 2.4e-238 829.7 916 46.5
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 5.4e-238 828.6 1010 43.7
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 1.2e-237 827.4 1023 44.6
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 3.3e-235 819.3 1013 44.2
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 4.3e-235 818.9 1012 43.4
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 4.7e-234 815.5 1011 43.1
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 2.4e-230 803.1 997 42.9
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 4.6e-229 798.9 1011 43.0
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 4.6e-229 798.9 1008 43.8
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 3.3e-227 792.7 1014 42.7
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 5.6e-227 792.0 1011 42.7
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 2.3e-225 786.6 977 44.1
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.0e-224 783.5 925 44.6
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 4.9e-223 778.9 1010 41.5
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 1.9e-222 776.9 743 50.6
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 3.3e-219 766.1 1021 40.9
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 2.3e-217 760.0 941 43.8
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 1.5e-216 757.3 1011 42.5
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 2.0e-216 756.9 1032 40.8
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 3.5e-213 746.1 1002 42.7
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.3e-212 744.2 1001 41.9
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.0e-212 743.0 1010 41.4
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 1.1e-211 741.1 1000 41.3
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 1.6e-210 737.3 1031 41.9
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 3.1e-209 733.0 1132 39.0
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 4.4e-208 729.2 998 39.9
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.5e-200 704.1 927 42.1
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 7.6e-200 701.8 1018 40.0
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.7e-199 700.7 806 46.2
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 4.5e-192 676.0 1011 38.9
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.0e-188 664.8 745 44.4
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 1.3e-188 664.5 749 45.9
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 3.2e-182 643.3 1010 37.0
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 3.2e-182 643.3 822 43.4
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 2.8e-178 630.2 1005 36.7
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 3.7e-178 629.8 856 39.7
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 1.4e-174 617.8 863 38.7
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 1.9e-174 617.5 1019 38.0
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 4.2e-174 616.3 715 44.6
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 6.3e-170 602.4 712 43.3
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 1.5e-168 597.8 1091 35.7
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.3e-156 557.4 581 47.8
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 1.4e-153 548.1 798 40.1
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 5.5e-150 536.2 1030 32.7
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 2.9e-143 513.8 573 45.5
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 2.0e-120 438.0 756 37.2
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.7e-119 434.9 422 50.5
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 1.4e-113 415.2 877 33.0
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 7.6e-91 339.7 440 44.5
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.8e-85 321.2 467 43.9
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.1e-84 319.3 379 47.5
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 4.4e-83 313.9 944 26.8
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 9.9e-83 312.8 1001 26.8
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 1.5e-78 298.9 1055 25.2
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 1.3e-71 275.8 200 61.0
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 5.8e-67 260.4 140 87.1
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 5.1e-63 247.3 159 74.8
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 7.6e-59 233.4 521 34.4
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.4e-57 229.2 200 52.0
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 7.9e-56 223.4 297 39.1
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 1.1e-49 203.0 147 62.6
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 7.9e-48 196.8 233 49.8
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 3.0e-47 194.9 424 33.5
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 3.0e-47 194.9 440 30.5
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 3.9e-47 194.5 233 43.3
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 1.5e-46 192.6 149 73.2
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 1.5e-46 192.6 251 43.8
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 5.7e-46 190.7 149 72.5
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.3e-42 179.5 245 42.4
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.0e-34 151.0 179 43.6
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.1e-33 149.8 131 51.1
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 7.2e-33 147.1 76 82.9
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.2e-31 141.0 196 46.4
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 2.4e-28 132.1 184 51.1
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 4.2e-25 121.3 114 53.5
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 1.2e-24 119.8 258 28.3
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 3.0e-23 115.2 128 53.9
Glyma.13G052500 Glycine max HOM05D005971 ORTHO05D007459 7.0e-20 104.0 66 71.2
Glyma.13G099100 Glycine max HOM05D005971 ORTHO05D007459 2.0e-19 102.4 60 81.7
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 2.7e-19 102.1 156 38.5
Glyma.13G098900 Glycine max HOM05D005971 ORTHO05D007459 5.9e-19 100.9 66 69.7
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 5.5e-17 94.4 68 73.5
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 3.7e-13 81.6 104 39.4
Medtr2g073720 Medicago truncatula HOM05D005971 ORTHO05D007459 3.1e-12 78.6 137 41.6
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 9.5e-09 67.0 156 30.1
Glyma.13G099002 Glycine max HOM05D032893 ORTHO05D007459 1.2e-08 66.6 70 57.1
Medtr2g082550 Medicago truncatula HOM05D000001 ORTHO05D010372 3.6e-08 65.1 47 66.0
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 1.2e-06 60.1 45 55.6


User provided reference genes

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