Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.9e-278 961.8 471 100.0
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 6.7e-260 900.2 466 92.9
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.0e-255 886.3 469 91.5
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 4.7e-253 877.5 469 90.6
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 3.3e-251 871.3 469 90.2
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.2e-250 868.6 469 89.1
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 3.5e-248 861.3 469 88.7
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 3.8e-247 857.8 463 89.2
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 3.8e-247 857.8 469 88.9
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 4.9e-234 814.3 469 85.5
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.7e-226 789.3 467 81.2
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.1e-225 786.6 467 80.7
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.5e-224 781.6 463 80.6
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.7e-223 779.2 467 80.1
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 6.6e-223 777.3 467 79.2
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.6e-223 776.9 468 78.8
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 1.1e-222 776.5 464 79.1
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-222 776.5 467 79.9
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 9.5e-222 773.5 467 78.4
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.2e-221 773.1 467 80.3
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 2.3e-220 768.8 465 79.8
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 3.1e-220 768.5 467 78.2
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.8e-220 767.3 467 79.0
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.2e-219 766.5 473 78.0
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.5e-219 766.1 466 78.1
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.5e-219 766.1 467 77.9
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 7.5e-219 763.8 468 78.6
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 9.8e-219 763.5 466 78.5
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-218 762.7 463 77.8
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-217 760.0 463 77.8
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.4e-217 759.6 462 78.1
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 7.0e-217 757.3 466 77.5
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 9.2e-217 756.9 467 76.7
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 9.2e-217 756.9 467 76.4
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 6.0e-216 754.2 463 77.8
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 7.8e-216 753.8 466 76.6
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 3.9e-215 751.5 463 78.6
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 3.9e-215 751.5 467 77.7
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.5e-214 749.6 468 76.9
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.3e-214 748.4 454 80.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-213 746.5 466 77.7
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 2.1e-213 745.7 466 77.0
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 2.8e-213 745.3 467 76.4
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.4e-212 743.0 453 78.4
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 4.4e-211 738.0 461 75.7
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 9.9e-211 736.9 417 85.9
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.7e-210 734.9 467 73.9
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 4.9e-210 734.6 466 76.2
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 8.3e-210 733.8 450 78.9
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.6e-208 729.6 463 75.8
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.7e-208 728.8 465 75.9
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 4.6e-208 728.0 466 75.1
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 7.8e-208 727.2 468 72.9
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 7.8e-208 727.2 465 75.7
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 7.8e-208 727.2 465 75.7
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.3e-207 725.7 367 94.3
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 5.1e-207 724.5 471 74.1
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 5.1e-207 724.5 465 74.6
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.1e-206 723.4 466 74.5
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 3.3e-206 721.8 421 81.7
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 7.3e-206 720.7 465 74.0
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.1e-205 719.2 466 74.5
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 4.7e-205 718.0 537 67.0
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 6.8e-204 714.1 468 75.0
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 6.8e-204 714.1 439 77.2
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 4.4e-203 711.4 461 75.1
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.3e-202 709.9 444 75.9
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 3.2e-201 705.3 431 79.4
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 7.1e-201 704.1 468 73.3
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 2.3e-199 699.1 466 72.7
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 6.6e-199 697.6 466 71.2
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.5e-198 696.4 467 73.4
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 5.6e-198 694.5 469 72.5
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 5.6e-198 694.5 467 72.6
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.4e-196 689.1 413 78.5
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.8e-194 681.8 472 72.0
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 4.9e-194 681.4 463 70.2
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.4e-193 679.9 492 67.7
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.1e-193 677.6 459 72.5
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 9.3e-193 677.2 466 72.3
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.0e-191 673.7 468 71.6
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.9e-191 671.8 467 71.5
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 6.6e-191 671.0 468 71.2
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.1e-190 670.2 421 75.8
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.5e-190 669.8 470 71.3
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.9e-190 669.5 467 71.3
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 9.6e-190 667.2 467 71.3
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.6e-189 666.4 466 71.7
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.6e-189 666.4 466 71.5
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 3.6e-189 665.2 467 70.9
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.8e-188 662.9 467 70.9
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 2.4e-188 662.5 468 68.6
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 4.0e-188 661.8 466 71.2
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 4.0e-188 661.8 467 70.7
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 4.0e-188 661.8 465 69.7
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 9.0e-188 660.6 466 70.8
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 9.0e-188 660.6 466 70.8
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.2e-187 660.2 466 71.0
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.5e-187 659.8 467 71.1
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 2.9e-186 655.6 465 69.0
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 3.8e-186 655.2 466 71.0
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 9.3e-185 650.6 512 63.3
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 3.5e-184 648.7 477 68.6
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 3.0e-183 645.6 467 67.9
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 9.6e-182 640.6 518 65.1
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.2e-178 629.4 443 70.9
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 8.2e-173 610.9 473 63.2
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 2.9e-170 602.4 464 66.8
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.8e-165 585.9 346 79.5
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 9.0e-164 580.9 400 71.2
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.7e-162 576.6 466 65.0
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.4e-161 573.5 509 58.0
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.9e-159 565.5 363 74.9
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 2.6e-155 552.7 488 58.4
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.4e-153 544.3 463 62.0
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.8e-151 540.0 466 59.4
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.0e-147 526.6 466 58.8
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.3e-135 486.5 464 53.4
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.6e-131 473.8 544 47.2
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.7e-128 463.0 467 54.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.2e-120 437.6 264 78.0
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.2e-115 421.0 322 64.9
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.3e-114 416.8 329 67.5
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.9e-105 387.1 234 79.9
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.7e-93 346.3 284 66.9
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.0e-90 338.2 477 42.8
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 3.6e-88 329.7 382 45.3
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 7.1e-84 315.5 203 73.4
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 4.3e-81 306.2 268 60.4
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 4.6e-75 286.2 490 35.7
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.1e-74 282.7 248 61.7
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 7.3e-73 278.9 273 53.1
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 3.4e-70 270.0 505 36.6
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 4.3e-65 253.1 461 38.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.3e-61 241.5 453 36.9
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.9e-55 219.2 170 65.9
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.3e-53 214.9 181 59.7
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.9e-52 211.1 332 40.7
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 9.3e-52 208.8 207 53.1
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 5.1e-50 203.0 198 53.5
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.7e-50 202.2 111 80.2
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.7e-49 198.7 111 78.4
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.2e-48 197.6 111 79.3
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.9e-45 187.2 102 91.2
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 1.1e-44 185.3 202 52.0
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 5.1e-42 176.4 107 78.5
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.8e-39 167.9 111 68.5
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.8e-39 167.9 122 65.6
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.2e-36 156.0 320 33.1
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 8.8e-34 149.1 122 62.3
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 7.4e-33 146.0 116 60.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 6.3e-32 142.9 92 70.7
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 9.4e-28 129.0 67 91.0
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.7e-24 118.2 62 85.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 6.5e-21 106.3 125 51.2
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.3e-16 92.0 58 74.1
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 8.5e-13 79.3 49 75.5
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 2.8e-08 64.3 47 68.1
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 1.4e-07 62.0 46 60.9
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 1.6e-06 58.5 35 80.0


User provided reference genes

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