Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03607_v3 Cicer arietinum L. HOM05D003316 ORTHO05D003690 4.4e-33 144.1 73 100.0
Phvul.005G051100 Phaseolus vulgaris HOM05D003316 ORTHO05D003690 2.0e-30 135.2 70 95.7
Psat1g005840 Pisum sativum HOM05D003316 ORTHO05D003690 5.0e-29 130.6 70 92.9
VMungo1080G0561 Vigna mungo HOM05D003316 ORTHO05D003690 4.2e-28 127.5 70 92.9
Glyma.15G259100 Glycine max HOM05D003316 ORTHO05D003690 3.6e-27 124.4 71 93.0
Medtr2g066700 Medicago truncatula HOM05D003316 ORTHO05D003690 3.6e-27 124.4 71 87.3
TPR.G33853 Trifolium pratense HOM05D003316 ORTHO05D003690 2.3e-26 121.7 72 90.3
arahy.Tifrunner.gnm1.ann1.JV1AYU Arachis hypogaea HOM05D003316 ORTHO05D003690 1.1e-20 102.8 70 78.6
arahy.Tifrunner.gnm1.ann1.Q78MS7 Arachis hypogaea HOM05D003316 ORTHO05D003690 1.1e-20 102.8 70 78.6
CiPaw.11G063000 Carya illinoinensis HOM05D003316 ORTHO05D003690 1.5e-20 102.4 79 72.2
Haze_07827 Corylus avellana HOM05D003316 ORTHO05D003690 4.2e-20 100.9 76 72.4
Cfa022970 Carpinus fangiana HOM05D003316 ORTHO05D003690 5.5e-20 100.5 77 71.4
Lalb_Chr03g0031631 Lupinus albus HOM05D003316 ORTHO05D003690 5.5e-20 100.5 74 74.3
Lalb_Chr20g0108611 Lupinus albus HOM05D003316 ORTHO05D003690 7.2e-20 100.1 77 72.7
QL04p080199 Quercus lobata HOM05D003316 ORTHO05D003690 2.1e-19 98.6 81 66.7
Lalb_Chr01g0007091 Lupinus albus HOM05D003316 ORTHO05D003690 3.6e-19 97.8 74 74.3
MD10G1205200 Malus domestica HOM05D003316 ORTHO05D003690 6.1e-19 97.1 77 68.8
MD05G1223700 Malus domestica HOM05D003316 ORTHO05D003690 8.0e-19 96.7 77 70.1
Prupe.4G136500 Prunus persica HOM05D003316 ORTHO05D003690 8.0e-19 96.7 75 69.3
FAN16G3516 Fragaria x ananassa HOM05D003316 ORTHO05D003690 3.0e-18 94.7 78 70.5
Cpa.g.c41747 Carica papaya HOM05D003316 ORTHO05D003690 4.0e-18 94.4 77 71.4
FvH4_3g15360 Fragaria vesca HOM05D003316 ORTHO05D003690 6.8e-18 93.6 78 69.2
FAN11G0988 Fragaria x ananassa HOM05D003316 ORTHO05D003690 6.8e-18 93.6 78 69.2
FAN25G0335 Fragaria x ananassa HOM05D003316 ORTHO05D003690 1.5e-17 92.4 78 67.9
Lalb_Chr01g0015851 Lupinus albus HOM05D003316 ORTHO05D003690 3.4e-17 91.3 77 71.4
RcHm_v2.0_Chr5g0025801 Rosa chinensis HOM05D003316 ORTHO05D003690 3.4e-17 91.3 78 69.2
ClCG02G018610 Citrullus lanatus HOM05D003316 ORTHO05D003690 4.4e-17 90.9 73 69.9
FAN21G3518 Fragaria x ananassa HOM05D003316 ORTHO05D003690 4.4e-17 90.9 78 67.9
Duzib187G1768 Durio zibethinus HOM05D003316 ORTHO05D003690 7.5e-17 90.1 77 70.1
QL04p080175 Quercus lobata HOM05D003316 ORTHO05D003690 7.5e-17 90.1 79 62.0
MELO3C012614.2 Cucumis melo HOM05D003316 ORTHO05D003690 9.8e-17 89.7 73 72.6
Sed0001262 Sechium edule HOM05D003316 ORTHO05D003690 1.7e-16 89.0 72 70.8
CsaV3_7G022850 Cucumis sativus L. HOM05D003316 ORTHO05D003690 2.2e-16 88.6 73 71.2
Potri.007G067300 Populus trichocarpa HOM05D003316 ORTHO05D003690 2.2e-16 88.6 72 68.1
Lj3g0011134 Lotus japonicus HOM05D003316 ORTHO05D003690 4.9e-16 87.4 71 66.2
Lalb_Chr25g0284791 Lupinus albus HOM05D003316 ORTHO05D003690 6.3e-16 87.0 75 68.0
Sed0011738 Sechium edule HOM05D003316 ORTHO05D003690 2.4e-15 85.1 73 64.4
CsaV3_6G013590 Cucumis sativus L. HOM05D003316 ORTHO05D003690 3.2e-15 84.7 73 67.1
TWI38G0778 Tripterygium wilfordii HOM05D003316 ORTHO05D003690 3.2e-15 84.7 72 69.4
Gohir.A13G122600 Gossypium hirsutum HOM05D003316 ORTHO05D003690 7.0e-15 83.6 80 66.2
MELO3C019643.2 Cucumis melo HOM05D003316 ORTHO05D003690 9.2e-15 83.2 73 65.8
Manes.14G011100 Manihot esculenta HOM05D003316 ORTHO05D003690 9.2e-15 83.2 75 65.3
MBI02_g21020_MAGBIO Magnolia biondii HOM05D003316 ORTHO05D003690 1.2e-14 82.8 71 66.2
Lj3g0011998 Lotus japonicus HOM05D003316 ORTHO05D003690 1.6e-14 82.4 52 76.9
Gohir.D13G126700 Gossypium hirsutum HOM05D003316 ORTHO05D003690 2.0e-14 82.0 80 65.0
Gorai.013G141800 Gossypium raimondii HOM05D003316 ORTHO05D003690 2.0e-14 82.0 80 65.0
Potri.005G096800 Populus trichocarpa HOM05D003316 ORTHO05D003690 2.0e-14 82.0 77 64.9
Actinidia12775 Actinidia chinensis HOM05D003316 ORTHO05D003690 2.7e-14 81.6 71 66.2
Lj1A910T5 Lonicera japonica HOM05D003316 ORTHO05D003690 2.7e-14 81.6 71 62.0
CSS0004609 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 4.6e-14 80.9 71 63.4
CSS0033846 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 4.6e-14 80.9 71 63.4
Manes.06G175000 Manihot esculenta HOM05D003316 ORTHO05D003690 4.6e-14 80.9 73 64.4
PGR031G2416 Punica granatum HOM05D003316 ORTHO05D003690 4.6e-14 80.9 72 63.9
Duzib213G0545 Durio zibethinus HOM05D003316 ORTHO05D003690 5.9e-14 80.5 78 64.1
GSVIVG01036804001 Vitis vinifera HOM05D003316 ORTHO05D003690 5.9e-14 80.5 76 61.8
Sed0025744 Sechium edule HOM05D003316 ORTHO05D003690 7.8e-14 80.1 73 64.4
Dinv19599 Davidia involucrata HOM05D003316 ORTHO05D003690 1.0e-13 79.7 72 63.9
TAR627G0616 Trochodendron aralioides HOM05D003316 ORTHO05D003690 1.0e-13 79.7 71 64.8
Dinv42487 Davidia involucrata HOM05D003316 ORTHO05D003690 1.3e-13 79.3 72 61.1
TWI38G1355 Tripterygium wilfordii HOM05D003316 ORTHO05D003690 1.3e-13 79.3 72 62.5
Nn7g37833 Nelumbo nucifera HOM05D003316 ORTHO05D003690 1.7e-13 79.0 72 62.5
THA.LOC104813611 Tarenaya hassleriana HOM05D003316 ORTHO05D003690 2.3e-13 78.6 71 62.0
Atru.chr1.123 Acer truncatum HOM05D003316 ORTHO05D003690 2.9e-13 78.2 79 59.5
Gohir.A01G096900 Gossypium hirsutum HOM05D003316 ORTHO05D003690 2.9e-13 78.2 84 58.3
Gorai.002G106100 Gossypium raimondii HOM05D003316 ORTHO05D003690 2.9e-13 78.2 84 58.3
Nitab4.5_0003929g0010 Nicotiana tabacum HOM05D003316 ORTHO05D003690 2.9e-13 78.2 74 60.8
vmacro11707 Vaccinium macrocarpon HOM05D003316 ORTHO05D003690 2.9e-13 78.2 73 58.9
Actinidia07371 Actinidia chinensis HOM05D003316 ORTHO05D003690 5.0e-13 77.4 71 64.8
CSS0025565 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 5.0e-13 77.4 72 63.9
ClCG09G022660 Citrullus lanatus HOM05D003316 ORTHO05D003690 5.0e-13 77.4 72 63.9
Carub.0001s1625 Capsella rubella HOM05D003316 ORTHO05D003690 8.6e-13 76.6 78 60.3
Aa31LG7G1040 Aethionema arabicum HOM05D003316 ORTHO05D003690 1.1e-12 76.3 76 63.2
Thecc.07G169200 Theobroma cacao HOM05D003316 ORTHO05D003690 1.1e-12 76.3 81 60.5
CANSAT80G0009 Cannabis sativa HOM05D003316 ORTHO05D003690 1.5e-12 75.9 82 54.9
THA.LOC104808128 Tarenaya hassleriana HOM05D003316 ORTHO05D003690 1.5e-12 75.9 75 60.0
Peaxi162Scf00452g00411 Petunia axillaris HOM05D003316 ORTHO05D003690 1.9e-12 75.5 71 57.7
Gohir.D01G081200 Gossypium hirsutum HOM05D003316 ORTHO05D003690 2.5e-12 75.1 84 57.1
Rhsim06G0241400 Rhododendron simsii HOM05D003316 ORTHO05D003690 4.3e-12 74.3 71 56.3
Aa31LG4G1840 Aethionema arabicum HOM05D003316 ORTHO05D003690 7.3e-12 73.6 76 60.5
Actinidia35424 Actinidia chinensis HOM05D003316 ORTHO05D003690 9.5e-12 73.2 74 56.8
Hma1.2p1_0151F.1_g067420 Hydrangea macrophylla HOM05D003316 ORTHO05D003690 9.5e-12 73.2 71 56.3
Nitab4.5_0000747g0040 Nicotiana tabacum HOM05D003316 ORTHO05D003690 9.5e-12 73.2 71 57.7
Sp5g34220 Schrenkiella parvula HOM05D003316 ORTHO05D003690 1.6e-11 72.4 73 58.9
Cc05_g16270 Coffea canephora HOM05D003316 ORTHO05D003690 2.1e-11 72.0 71 57.7
AL2G39640 Arabidopsis lyrata HOM05D003316 ORTHO05D003690 2.8e-11 71.6 74 62.2
DCAR_016833 Daucus carota HOM05D003316 ORTHO05D003690 3.6e-11 71.2 75 58.7
Eucgr.F04447 Eucalyptus grandis HOM05D003316 ORTHO05D003690 3.6e-11 71.2 71 53.5
Nitab4.5_0008429g0010 Nicotiana tabacum HOM05D003316 ORTHO05D003690 3.6e-11 71.2 79 58.2
Sopen07g034730 Solanum pennellii HOM05D003316 ORTHO05D003690 4.7e-11 70.9 71 56.3
Actinidia37126 Actinidia chinensis HOM05D003316 ORTHO05D003690 8.0e-11 70.1 74 55.4
SGA_v2.0_scaffold239G44036 Striga asiatica HOM05D003316 ORTHO05D003690 1.4e-10 69.3 71 56.3
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.8e-10 68.9 71 56.3
Oeu019707.1 Olea europaea HOM05D003316 ORTHO05D003690 1.8e-10 68.9 72 55.6
AT1G16500 Arabidopsis thaliana HOM05D003316 ORTHO05D003690 3.1e-10 68.2 80 56.2
BcaB02g08670 Brassica carinata HOM05D003316 ORTHO05D003690 3.1e-10 68.2 72 58.3
Migut.H01676 Erythranthe guttata HOM05D003316 ORTHO05D003690 3.1e-10 68.2 71 52.1
Solyc07g066570.4 Solanum lycopersicum HOM05D003316 ORTHO05D003690 3.1e-10 68.2 71 54.9
Migut.M01536 Erythranthe guttata HOM05D003316 ORTHO05D003690 4.0e-10 67.8 71 54.9
PGSC0003DMG400022120 Solanum tuberosum HOM05D003316 ORTHO05D003690 4.0e-10 67.8 71 54.9
CDE02G2536 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 5.2e-10 67.4 70 52.9
Thhalv10008548m.g Eutrema salsugineum HOM05D003316 ORTHO05D003690 5.2e-10 67.4 74 52.7
BcaC05g25564 Brassica carinata HOM05D003316 ORTHO05D003690 6.8e-10 67.0 78 52.6
unitig_37.g12202 Utricularia gibba HOM05D003316 ORTHO05D003690 6.8e-10 67.0 71 54.9
MSTRG.13075 Avicennia marina HOM05D003316 ORTHO05D003690 8.9e-10 66.6 71 57.7
Ciclev10005652m.g Citrus clementina HOM05D003316 ORTHO05D003690 8.9e-10 66.6 81 54.3
DCAR_013730 Daucus carota HOM05D003316 ORTHO05D003690 8.9e-10 66.6 74 54.1
Oeu051683.1 Olea europaea HOM05D003316 ORTHO05D003690 8.9e-10 66.6 71 56.3
BcaB02g06634 Brassica carinata HOM05D003316 ORTHO05D003690 1.5e-09 65.9 78 52.6
A06p12480 Brassica napus HOM05D003316 ORTHO05D003690 1.5e-09 65.9 77 51.9
C05p14730 Brassica napus HOM05D003316 ORTHO05D003690 1.5e-09 65.9 77 51.9
BolC5t30193H Brassica oleracea HOM05D003316 ORTHO05D003690 1.5e-09 65.9 77 51.9
BraA06t24411Z Brassica rapa HOM05D003316 ORTHO05D003690 1.5e-09 65.9 77 51.9
BolC6t40320H Brassica oleracea HOM05D003316 ORTHO05D003690 2.0e-09 65.5 77 50.6
Sed0022394 Sechium edule HOM05D003316 ORTHO05D003690 2.0e-09 65.5 73 57.5
BcaC05g25563 Brassica carinata HOM05D003316 ORTHO05D003690 2.6e-09 65.1 77 51.9
BolC8t51988H Brassica oleracea HOM05D003316 ORTHO05D003690 3.4e-09 64.7 74 51.4
C08p44470 Brassica napus HOM05D003316 ORTHO05D003690 5.8e-09 63.9 74 51.4
SalBow8G1536 Salvia bowleyana HOM05D003316 ORTHO05D003690 5.8e-09 63.9 71 50.7
MSTRG.14558 Avicennia marina HOM05D003316 ORTHO05D003690 7.5e-09 63.5 71 52.1
QL04p080132 Quercus lobata HOM05D003316 ORTHO05D003690 7.5e-09 63.5 60 63.3
CARHR016970 Cardamine hirsuta HOM05D003316 ORTHO05D003690 9.8e-09 63.2 79 53.2
QL04p079974 Quercus lobata HOM05D003316 ORTHO05D003690 9.8e-09 63.2 60 63.3
BcaC08g47478 Brassica carinata HOM05D003316 ORTHO05D003690 1.3e-08 62.8 77 49.4
C06p53030 Brassica napus HOM05D003316 ORTHO05D003690 1.3e-08 62.8 77 49.4
GSVIVG01038001001 Vitis vinifera HOM05D003316 ORTHO05D003690 1.3e-08 62.8 71 53.5
BcaNung04897 Brassica carinata HOM05D003316 ORTHO05D003690 2.2e-08 62.0 71 50.7
MSTRG.7073 Avicennia marina HOM05D003316 ORTHO05D003690 2.9e-08 61.6 71 50.7
MSTRG.16103 Avicennia marina HOM05D003316 ORTHO05D003690 3.7e-08 61.2 71 52.1
CAN.G492.73 Capsicum annuum HOM05D003316 ORTHO05D003690 3.7e-08 61.2 45 66.7
ATR0763G052 Amborella trichopoda HOM05D003316 ORTHO05D003690 8.3e-08 60.1 70 51.4
CDE06G2584 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.1e-07 59.7 73 47.9
Hund12435 Selenicereus undatus HOM05D003316 ORTHO05D003690 1.1e-07 59.7 52 63.5
CDE02G3419 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.9e-07 58.9 76 48.7
unitig_26.g10065 Utricularia gibba HOM05D003316 ORTHO05D003690 1.9e-07 58.9 74 45.9
Thhalv10019040m.g Eutrema salsugineum HOM05D003316 ORTHO05D003690 2.4e-07 58.5 80 51.2
AL1G28660 Arabidopsis lyrata HOM05D003316 ORTHO05D003690 5.4e-07 57.4 81 49.4
Carub.0002s2603 Capsella rubella HOM05D003316 ORTHO05D003690 5.4e-07 57.4 75 53.3
EL10Ac8g18492 Beta vulgaris HOM05D003316 ORTHO05D003690 1.2e-06 56.2 47 61.7
unitig_578.g16328 Utricularia gibba HOM05D003316 ORTHO05D003690 1.2e-06 56.2 47 59.6
HanXRQChr11g0335691 Helianthus annuus HOM05D003316 ORTHO05D003690 1.6e-06 55.8 75 49.3
HPP92_026634 Vanilla planifolia HOM05D003316 ORTHO05D003690 1.6e-06 55.8 75 50.7
SHI21400 Sapria himalayana HOM05D003316 ORTHO05D003690 2.0e-06 55.5 78 46.2
AT1G79160 Arabidopsis thaliana HOM05D003316 ORTHO05D003690 2.7e-06 55.1 75 50.7
unitig_8.g4755 Utricularia gibba HOM05D003316 ORTHO05D003690 4.6e-06 54.3 46 58.7
AUR62016808 Chenopodium quinoa HOM05D003316 ORTHO05D003690 6.0e-06 53.9 37 70.3


User provided reference genes

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