Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 7.7e-132 473.8 234 100.0
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.9e-118 428.7 234 88.0
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.2e-116 423.3 230 89.1
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.6e-116 422.9 229 88.6
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.6e-116 422.9 229 88.6
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.0e-115 420.2 229 87.3
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 8.6e-115 417.2 229 87.8
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.1e-114 416.8 229 85.6
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 9.5e-114 413.7 227 85.5
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.2e-113 413.3 229 85.6
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.6e-113 412.9 227 87.7
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 2.1e-113 412.5 229 86.5
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 2.6e-111 405.6 229 84.7
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 2.6e-111 405.6 229 84.7
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 3.4e-111 405.2 229 82.5
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 2.7e-108 395.6 229 83.8
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 1.1e-106 390.2 232 83.2
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.2e-102 375.9 226 78.8
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 4.9e-102 374.8 231 79.7
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 2.1e-100 369.4 230 77.4
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 2.7e-100 369.0 229 78.2
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 4.6e-100 368.2 230 74.8
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 2.3e-99 365.9 230 75.2
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 6.6e-99 364.4 230 76.1
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.5e-98 362.5 230 77.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.3e-98 362.1 227 77.1
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.3e-98 362.1 229 76.9
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 7.3e-98 360.9 229 76.4
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 9.5e-98 360.5 230 75.2
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.2e-97 360.1 227 77.1
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.6e-97 359.8 228 75.4
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.6e-97 359.8 228 75.9
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 2.8e-97 359.0 228 75.9
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.6e-97 358.6 219 77.6
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 8.1e-97 357.5 233 71.7
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.4e-96 356.7 227 75.8
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.8e-96 356.3 219 76.7
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 1.8e-96 356.3 231 73.2
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 5.2e-96 354.8 226 73.5
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 6.8e-96 354.4 231 73.6
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.8e-96 354.4 227 76.2
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 8.9e-96 354.0 229 75.1
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 8.9e-96 354.0 227 75.3
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.5e-95 353.2 231 73.2
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.0e-95 352.8 219 76.7
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 2.0e-95 352.8 227 73.1
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.0e-95 352.8 227 75.3
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 4.4e-95 351.7 227 73.1
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.7e-94 349.7 233 73.0
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.8e-94 348.6 224 75.0
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 6.4e-94 347.8 253 69.6
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 6.4e-94 347.8 232 71.6
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.9e-93 346.3 234 73.5
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.4e-93 345.9 229 72.9
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.4e-93 345.9 224 75.0
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 3.2e-93 345.5 230 73.0
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 5.4e-93 344.7 226 72.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 5.4e-93 344.7 235 72.8
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.6e-92 343.2 224 71.4
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 2.1e-92 342.8 230 72.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.7e-92 342.4 232 70.3
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 3.5e-92 342.0 233 72.1
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.5e-92 342.0 234 70.5
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.5e-92 342.0 235 70.6
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 7.8e-92 340.9 230 71.3
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.8e-92 340.9 232 72.0
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.3e-91 339.3 234 69.7
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 3.0e-91 339.0 233 71.2
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.0e-91 339.0 232 71.1
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.0e-91 339.0 226 73.0
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 3.9e-91 338.6 226 72.1
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 6.6e-91 337.8 233 70.8
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 6.6e-91 337.8 221 73.3
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.1e-90 337.0 226 71.7
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.5e-90 336.7 234 71.8
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.9e-90 336.3 224 72.8
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 2.5e-90 335.9 232 69.0
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.3e-90 335.1 224 72.8
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 5.6e-90 334.7 234 70.1
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 5.6e-90 334.7 224 72.3
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 9.6e-90 334.0 238 69.3
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-89 333.6 236 71.6
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-89 333.6 236 71.6
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.1e-89 332.8 232 69.8
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 2.8e-89 332.4 231 69.7
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.7e-89 331.6 240 68.8
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 6.2e-89 331.3 240 68.8
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 6.2e-89 331.3 232 69.4
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.4e-88 330.1 229 70.3
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.8e-88 329.7 215 74.0
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 6.9e-88 327.8 240 67.9
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 6.9e-88 327.8 240 67.9
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 8.9e-88 327.4 239 67.4
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 8.9e-88 327.4 230 68.7
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 2.0e-87 326.2 227 69.2
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 2.0e-87 326.2 240 67.9
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 2.0e-87 326.2 232 69.0
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 5.8e-87 324.7 226 71.7
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 5.8e-87 324.7 214 72.4
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.3e-86 323.6 233 68.7
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.3e-86 323.6 233 68.7
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.9e-86 322.4 224 71.0
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.8e-86 322.0 225 67.6
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 6.4e-86 321.2 227 69.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.4e-86 321.2 229 69.9
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.1e-85 320.5 234 68.4
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 1.4e-85 320.1 275 59.3
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.4e-85 320.1 210 71.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.2e-85 318.5 222 67.6
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 5.4e-85 318.2 219 68.5
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 7.1e-85 317.8 234 67.5
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 9.3e-85 317.4 234 65.8
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.3e-83 313.5 230 67.0
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.3e-83 312.8 232 65.5
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 2.3e-83 312.8 230 66.1
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.9e-82 309.7 229 67.7
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 7.3e-82 307.8 234 64.5
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 3.6e-81 305.4 224 67.4
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 4.5e-79 298.5 178 81.5
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.9e-78 295.8 229 65.9
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 4.2e-77 292.0 232 61.6
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 6.0e-76 288.1 235 62.1
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.0e-75 285.8 174 78.2
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 2.5e-74 282.7 219 61.6
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 5.3e-72 275.0 180 73.9
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 3.4e-71 272.3 234 61.1
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.4e-70 268.1 232 61.2
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.4e-69 266.9 212 62.7
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 3.2e-69 265.8 230 59.6
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.9e-66 256.5 223 53.8
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 5.3e-64 248.4 184 69.6
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.6e-63 246.1 162 73.5
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 3.2e-61 239.2 159 71.7
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 3.5e-60 235.7 157 69.4
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 4.3e-58 228.8 167 69.5
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.9e-53 213.4 135 77.0
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.2e-52 210.7 225 47.6
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 2.7e-52 209.5 134 74.6
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.8e-51 206.8 187 61.0
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 3.9e-51 205.7 228 48.7
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 8.2e-49 198.0 201 51.2
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.1e-48 195.7 201 50.7
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.6e-47 193.0 186 55.9
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.1e-44 183.3 120 71.7
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 2.8e-41 172.9 95 85.3
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.5e-39 167.2 197 46.7
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 6.7e-35 151.8 99 67.7
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 9.7e-34 147.9 158 50.6
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 3.7e-33 146.0 225 43.6
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 3.7e-33 146.0 152 51.3
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.0e-26 123.6 216 36.1
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 3.5e-23 112.8 104 57.7
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.9e-22 109.8 99 59.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.9e-21 107.1 90 60.0
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.9e-21 107.1 203 32.0
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.1e-20 102.1 61 80.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.8e-19 100.5 60 80.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-19 100.5 60 80.0
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-19 100.1 61 78.7
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 5.7e-18 95.5 69 69.6
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.4e-16 90.9 64 65.6
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.8e-16 90.5 67 65.7
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.6e-15 87.4 107 39.3
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-14 84.3 59 69.5
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 9.8e-10 68.2 153 32.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 8.3e-09 65.1 44 77.3
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 1.8e-08 63.9 39 69.2
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.1e-08 63.2 51 66.7
Glyma.U031114 Glycine max HOM05D004213 ORTHO05D005091 2.7e-07 60.1 39 74.4
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 3.5e-07 59.7 39 71.8
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.3e-06 57.0 44 63.6
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 3.8e-06 56.2 48 56.2


User provided reference genes

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