Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 0.0e+00 1245.0 745 100.0
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 9.6e-261 903.7 747 74.8
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 9.6e-261 903.7 767 71.4
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 2.0e-250 869.4 798 64.7
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 2.2e-244 849.4 814 63.8
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.5e-242 843.2 799 62.8
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 7.2e-240 834.3 779 63.8
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.2e-217 759.6 793 59.1
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 2.7e-215 752.7 795 58.6
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 4.7e-215 751.9 792 59.0
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 3.1e-211 739.2 726 62.0
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-210 737.3 795 58.0
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 1.6e-210 736.9 795 59.4
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 2.0e-205 719.9 792 58.2
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 2.8e-204 716.1 768 59.0
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 3.1e-203 712.6 786 57.8
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 7.0e-203 711.4 794 56.2
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 4.7e-199 698.7 789 55.5
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 8.9e-198 694.5 787 56.5
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 2.4e-195 686.4 788 56.0
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 8.6e-193 677.9 803 53.1
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 8.0e-191 671.4 787 55.8
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 4.1e-187 659.1 817 52.0
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.5e-186 656.0 797 53.1
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 3.5e-178 629.4 797 54.2
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.4e-174 617.5 782 51.7
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.8e-174 617.1 781 51.7
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.4e-174 616.7 811 52.8
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 3.4e-173 612.8 620 60.3
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 1.3e-172 610.9 812 51.0
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.3e-172 610.9 819 49.5
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 1.7e-172 610.5 814 50.2
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 6.4e-172 608.6 795 50.2
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 8.4e-172 608.2 804 50.9
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.7e-170 603.2 795 51.1
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 7.8e-170 601.7 812 49.5
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 3.0e-169 599.7 780 51.9
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.1e-168 597.8 808 49.3
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.9e-168 597.0 789 54.0
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.3e-168 596.3 796 50.4
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 1.6e-167 594.0 797 49.2
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.6e-167 594.0 823 49.0
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 2.8e-167 593.2 808 48.9
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 2.8e-167 593.2 798 49.9
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 4.0e-166 589.3 765 52.2
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-165 587.8 771 50.6
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 1.1e-163 581.3 844 48.0
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 2.7e-162 576.6 789 49.2
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.0e-161 573.2 789 48.9
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.5e-160 570.1 796 48.5
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 3.3e-160 569.7 790 48.0
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 7.3e-160 568.5 809 48.9
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.8e-159 566.6 796 48.5
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 4.8e-159 565.8 781 49.3
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 3.1e-158 563.1 496 66.3
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 2.6e-157 560.1 801 51.2
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.5e-157 559.3 825 48.7
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 4.5e-157 559.3 766 50.0
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 5.8e-157 558.9 798 49.5
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 8.4e-156 555.1 813 47.2
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 2.4e-155 553.5 797 46.9
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.4e-155 553.5 788 49.4
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 4.6e-154 549.3 717 51.2
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 1.8e-153 547.4 797 48.6
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 5.1e-153 545.8 953 42.8
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 5.1e-153 545.8 790 46.6
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 6.2e-151 538.9 797 46.4
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 6.2e-151 538.9 797 46.5
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.4e-150 537.7 790 49.2
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 6.9e-150 535.4 788 50.9
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.3e-148 531.2 796 49.1
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 8.4e-148 528.5 800 49.2
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 8.4e-148 528.5 801 47.8
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.9e-147 527.3 798 48.9
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.9e-147 527.3 806 48.1
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 3.2e-147 526.6 844 44.7
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 1.3e-145 521.2 862 44.7
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 8.7e-145 518.5 790 49.7
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 7.4e-144 515.4 784 47.3
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 9.6e-144 515.0 788 47.8
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 3.7e-143 513.1 757 48.9
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 4.8e-143 512.7 797 46.0
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 8.2e-143 511.9 705 50.1
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 3.1e-142 510.0 749 47.3
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.2e-141 508.1 802 44.8
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 4.5e-141 506.1 799 49.3
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 5.8e-141 505.8 618 52.1
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.3e-140 504.6 618 52.1
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 4.2e-139 499.6 797 46.4
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.0e-137 495.0 681 45.7
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.3e-135 488.0 604 54.3
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 6.3e-135 485.7 695 45.2
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 4.1e-134 483.0 807 45.5
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 5.0e-132 476.1 722 45.2
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 5.0e-132 476.1 831 46.1
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 1.1e-131 474.9 824 45.1
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 2.5e-131 473.8 722 44.9
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 7.2e-131 472.2 722 44.7
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 7.2e-131 472.2 722 44.7
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 1.2e-130 471.5 722 44.7
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 2.3e-129 467.2 539 54.5
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 6.7e-129 465.7 674 46.7
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 3.3e-128 463.4 696 46.6
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.7e-127 461.1 688 45.8
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 2.8e-127 460.3 700 48.4
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 4.8e-127 459.5 689 46.6
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 1.4e-126 458.0 790 44.1
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 1.5e-125 454.5 731 44.2
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 5.9e-125 452.6 679 44.6
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.7e-124 451.1 784 44.6
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 5.5e-123 446.0 706 42.5
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.7e-122 443.7 693 45.9
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.0e-121 441.8 685 44.7
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 5.1e-121 439.5 691 43.8
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.1e-120 438.3 754 42.7
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 2.8e-119 433.7 790 44.9
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 6.3e-119 432.6 689 43.3
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 8.2e-119 432.2 724 45.4
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-118 431.0 606 46.5
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.0e-116 425.2 722 46.3
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 2.5e-115 420.6 686 42.4
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 3.2e-115 420.2 671 43.5
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 8.0e-114 415.6 788 42.3
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 1.1e-112 411.8 830 41.6
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 3.5e-109 400.2 820 38.9
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 2.2e-108 397.5 782 40.0
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 7.2e-107 392.5 738 41.9
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 2.7e-106 390.6 713 41.0
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 2.6e-104 384.0 735 41.9
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 7.0e-102 375.9 841 36.9
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 3.8e-100 370.2 707 41.4
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.1e-99 368.6 387 58.1
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-96 358.6 661 42.2
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 5.9e-93 346.3 437 50.1
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 8.6e-92 342.4 607 41.8
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 2.3e-89 334.3 398 54.0
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 6.8e-81 306.2 343 54.8
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 4.9e-79 300.1 741 33.9
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 1.5e-75 288.5 327 54.4
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 9.2e-54 216.1 341 43.7
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 3.9e-52 210.7 333 45.0
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 8.7e-52 209.5 249 55.8
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 4.3e-51 207.2 725 30.6
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.8e-49 201.8 378 38.9
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 1.3e-47 195.7 222 57.2
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 2.1e-45 188.3 388 39.7
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 4.6e-45 187.2 143 69.2
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.0e-44 186.0 358 42.7
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 6.4e-39 166.8 324 35.2
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 5.1e-36 157.1 201 50.7
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 8.7e-36 156.4 145 62.1
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 2.1e-26 125.2 183 49.7
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 6.2e-26 123.6 107 61.7
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 1.4e-25 122.5 181 45.9
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 1.4e-22 112.5 119 52.1
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.5e-21 107.8 136 50.0
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.2e-15 88.6 86 55.8
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 7.2e-14 83.6 129 40.3
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 7.9e-13 80.1 194 35.6
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 1.5e-11 75.9 91 49.5
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 5.7e-11 73.9 201 33.3
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 1.7e-10 72.4 74 56.8
arahy.Tifrunner.gnm1.ann1.2H8IEQ Arachis hypogaea HOM05D003721 ORTHO05D004303 3.7e-10 71.2 66 59.1
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 8.2e-10 70.1 141 35.5
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 8.2e-10 70.1 299 26.8
arahy.Tifrunner.gnm1.ann1.EAH0NM Arachis hypogaea HOM05D003721 ORTHO05D004303 3.1e-09 68.2 66 56.1
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.1e-09 68.2 479 24.8
arahy.Tifrunner.gnm1.ann1.TR1UXP Arachis hypogaea HOM05D003721 ORTHO05D004303 4.1e-09 67.8 66 57.6
arahy.Tifrunner.gnm1.ann1.4H30G8 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-08 66.2 66 56.1
arahy.Tifrunner.gnm1.ann1.BE33XR Arachis hypogaea HOM05D003721 ORTHO05D004303 3.4e-08 64.7 57 63.2
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 5.9e-08 63.9 269 23.8
arahy.Tifrunner.gnm1.ann1.0WEA7F Arachis hypogaea HOM05D003721 ORTHO05D004303 5.0e-07 60.8 66 53.0
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 3.2e-06 58.2 127 35.4
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.2e-06 57.8 128 37.5
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 9.4e-06 56.6 277 30.0


User provided reference genes

Program Settings