Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 8.2e-123 443.7 225 100.0
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 6.8e-93 344.4 230 80.4
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 2.1e-81 306.2 219 74.4
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 1.0e-80 303.9 210 75.7
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 1.0e-80 303.9 210 75.7
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 5.1e-80 301.6 235 72.3
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 2.5e-79 299.3 216 74.1
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 4.3e-79 298.5 216 74.5
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 4.7e-78 295.0 223 72.2
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 1.8e-77 293.1 230 73.9
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 6.8e-77 291.2 209 76.1
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 6.8e-77 291.2 221 72.9
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 4.4e-76 288.5 199 77.9
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 2.2e-75 286.2 222 71.6
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 8.4e-75 284.3 224 70.1
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 1.1e-74 283.9 226 68.1
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 1.1e-74 283.9 223 72.2
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 1.4e-74 283.5 221 70.6
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 1.9e-74 283.1 224 68.3
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 9.2e-74 280.8 230 69.1
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 1.6e-73 280.0 231 68.8
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 3.5e-73 278.9 217 70.0
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.5e-73 278.9 230 68.7
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.5e-73 278.9 230 68.7
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 3.5e-73 278.9 230 68.7
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 4.6e-73 278.5 200 76.0
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 4.6e-73 278.5 206 73.3
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 1.3e-72 276.9 202 74.8
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 2.3e-72 276.2 221 69.2
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 3.0e-72 275.8 220 66.8
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 3.9e-72 275.4 227 68.3
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 3.9e-72 275.4 222 69.4
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 1.5e-71 273.5 226 66.8
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 3.3e-71 272.3 229 65.1
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 3.3e-71 272.3 173 80.9
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 5.6e-71 271.6 222 67.6
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 9.6e-71 270.8 170 82.4
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 1.2e-70 270.4 222 65.8
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 1.6e-70 270.0 200 75.0
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 2.8e-70 269.2 170 81.8
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 2.8e-70 269.2 170 81.8
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 3.6e-70 268.9 199 72.4
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 2.4e-69 266.2 200 74.5
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 3.1e-69 265.8 221 67.0
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 4.0e-69 265.4 229 64.6
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 5.2e-69 265.0 228 66.2
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 6.8e-69 264.6 170 80.6
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 1.2e-68 263.8 198 70.2
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 1.5e-68 263.5 223 65.5
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 2.0e-68 263.1 226 65.0
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 3.4e-68 262.3 229 62.4
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 4.4e-68 261.9 225 65.3
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 7.6e-68 261.2 219 64.8
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 7.6e-68 261.2 167 80.8
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 7.6e-68 261.2 222 65.8
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 9.9e-68 260.8 225 66.7
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 1.7e-67 260.0 199 70.4
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 3.8e-67 258.8 222 64.4
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 4.9e-67 258.5 220 65.5
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 1.4e-66 256.9 205 66.3
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 1.9e-66 256.5 217 66.8
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 4.2e-66 255.4 200 69.0
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 4.2e-66 255.4 172 77.9
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 1.6e-65 253.4 212 67.9
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 1.6e-65 253.4 218 68.3
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 2.1e-65 253.1 178 74.2
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 2.1e-65 253.1 228 63.6
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 3.5e-65 252.3 210 66.2
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 3.5e-65 252.3 224 65.2
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 4.6e-65 251.9 236 60.2
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 6.0e-65 251.5 170 74.7
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 6.0e-65 251.5 170 74.7
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 7.8e-65 251.1 211 66.4
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 7.8e-65 251.1 233 62.7
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 7.8e-65 251.1 224 64.3
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 6.6e-64 248.1 220 65.0
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 6.6e-64 248.1 220 65.0
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 8.7e-64 247.7 127 93.7
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 1.1e-63 247.3 218 61.9
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 1.1e-63 247.3 202 64.4
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 1.9e-63 246.5 169 73.4
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 4.3e-63 245.4 219 64.4
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 5.6e-63 245.0 212 65.1
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 1.3e-62 243.8 200 65.5
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 1.6e-62 243.4 140 86.4
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 1.6e-62 243.4 142 83.1
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 2.1e-62 243.0 202 63.9
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 2.1e-62 243.0 142 83.8
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 2.8e-62 242.7 210 64.8
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 3.6e-62 242.3 147 82.3
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 4.8e-62 241.9 127 91.3
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 3.1e-61 239.2 194 69.1
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 3.1e-61 239.2 125 91.2
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 6.9e-61 238.0 147 81.0
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 9.0e-61 237.7 133 88.0
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 1.2e-60 237.3 152 77.6
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 1.2e-60 237.3 152 77.6
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 1.2e-60 237.3 152 77.6
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 1.2e-60 237.3 152 77.6
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 2.0e-60 236.5 132 85.6
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 3.4e-60 235.7 199 66.8
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 5.8e-60 235.0 117 96.6
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 1.3e-59 233.8 152 76.3
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 2.2e-59 233.0 126 88.9
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 2.2e-59 233.0 137 84.7
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 2.2e-59 233.0 173 72.3
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 2.2e-59 233.0 119 93.3
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 2.9e-59 232.6 130 88.5
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 4.9e-59 231.9 194 67.0
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 4.9e-59 231.9 194 67.0
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 4.9e-59 231.9 194 67.0
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 6.4e-59 231.5 213 62.4
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 8.4e-59 231.1 194 66.5
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 1.4e-58 230.3 137 84.7
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 2.4e-58 229.6 129 87.6
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 4.2e-58 228.8 192 67.2
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 4.2e-58 228.8 203 66.0
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 7.1e-58 228.0 221 54.3
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 1.2e-57 227.3 177 69.5
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 1.2e-57 227.3 122 89.3
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 1.2e-57 227.3 122 89.3
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 2.7e-57 226.1 224 58.5
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 4.6e-57 225.3 175 66.9
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.0e-56 224.2 198 62.1
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 5.1e-56 221.9 202 61.4
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 1.9e-55 219.9 122 89.3
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 2.5e-55 219.5 130 84.6
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 2.8e-54 216.1 166 69.9
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 6.2e-54 214.9 212 59.9
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 1.1e-53 214.2 116 84.5
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 1.2e-52 210.7 149 74.5
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 7.6e-52 208.0 139 74.8
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 8.4e-51 204.5 226 58.4
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 1.4e-50 203.8 198 58.1
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 1.9e-50 203.4 112 83.0
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.6e-49 200.3 113 83.2
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.0e-48 197.6 145 69.7
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.3e-48 196.4 225 56.0
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 3.0e-48 196.1 148 67.6
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 5.1e-48 195.3 112 82.1
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 5.1e-48 195.3 112 82.1
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.1e-47 194.1 143 67.1
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 3.3e-47 192.6 112 80.4
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 8.1e-46 188.0 199 53.8
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 5.3e-45 185.3 179 59.8
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 6.9e-45 184.9 188 53.2
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 9.0e-45 184.5 193 56.0
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 2.5e-42 176.4 129 66.7
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 1.2e-41 174.1 172 60.5
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 2.7e-41 172.9 108 78.7
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 7.9e-41 171.4 140 64.3
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 2.3e-40 169.9 139 61.9
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 3.3e-39 166.0 130 64.6
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.6e-38 163.7 176 55.1
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.9e-31 140.2 97 75.3
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 2.5e-31 139.8 87 74.7
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 9.7e-31 137.9 155 54.8
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 3.2e-26 122.9 111 57.7
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 1.2e-25 120.9 78 73.1
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 2.1e-25 120.2 78 71.8
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 7.9e-25 118.2 97 61.9
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 3.0e-24 116.3 78 70.5
TAR633G0104 Trochodendron aralioides HOM05D003583 ORTHO05D004169 1.1e-23 114.4 95 58.9
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 9.7e-23 111.3 78 69.2
Nn5g26790 Nelumbo nucifera HOM05D003583 ORTHO05D004169 6.3e-22 108.6 125 54.4
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 1.1e-21 107.8 78 67.9
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 6.9e-21 105.1 128 53.1
Nn6g33306 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.2e-20 104.4 95 62.1
Zm00001eb115380 Zea mays HOM05D003583 ORTHO05D004169 5.9e-20 102.1 98 55.1
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 6.5e-19 98.6 70 71.4
Nn7g37781 Nelumbo nucifera HOM05D003583 ORTHO05D004169 9.4e-18 94.7 89 59.6
Cre16.g648800 Chlamydomonas reinhardtii HOM05D003583 ORTHO05D004169 2.2e-14 83.6 88 52.3
Nn2g11337 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.6e-12 77.4 98 50.0
Rhsim10G0000100 Rhododendron simsii HOM05D000576 ORTHO05D000368 2.6e-12 76.6 73 60.3
RcHm_v2.0_Chr5g0072291 Rosa chinensis HOM05D003583 ORTHO05D004169 7.2e-10 68.6 48 68.8
PSO210G6806 Papaver somniferum HOM05D002790 ORTHO05D003033 7.5e-07 58.5 102 35.3
PSO210G2567 Papaver somniferum HOM05D002790 ORTHO05D003033 2.2e-06 57.0 102 34.3


User provided reference genes

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