Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03474_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 5.6e-74 280.8 137 100.0
Medtr7g055863 Medicago truncatula HOM05D003583 ORTHO05D004169 4.3e-66 254.6 128 96.1
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 4.8e-65 251.1 129 94.6
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 2.2e-62 242.3 129 89.9
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 1.1e-61 240.0 129 88.4
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 4.2e-61 238.0 129 88.4
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 4.2e-61 238.0 129 89.1
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 5.5e-61 237.7 129 89.1
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 2.1e-60 235.7 124 91.9
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 3.5e-60 235.0 124 90.3
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 5.1e-59 231.1 123 87.8
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 5.1e-59 231.1 124 89.5
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 1.1e-58 229.9 130 83.8
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 1.5e-58 229.6 129 86.8
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 1.5e-58 229.6 122 89.3
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 1.5e-58 229.6 128 83.6
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 2.5e-58 228.8 129 85.3
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 3.3e-58 228.4 123 88.6
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 4.3e-58 228.0 124 87.9
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 4.3e-58 228.0 124 87.9
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 4.3e-58 228.0 124 86.3
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 7.4e-58 227.3 129 84.5
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 7.4e-58 227.3 124 87.9
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 7.4e-58 227.3 124 87.9
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 7.4e-58 227.3 123 86.2
Actinidia30051 Actinidia chinensis HOM05D003583 ORTHO05D004169 9.6e-58 226.9 124 88.7
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 9.6e-58 226.9 124 87.9
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 9.6e-58 226.9 124 87.1
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.6e-57 226.1 124 86.3
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.6e-57 226.1 123 87.0
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.6e-57 226.1 123 89.4
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 2.1e-57 225.7 119 89.1
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 2.1e-57 225.7 124 85.5
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 2.1e-57 225.7 129 84.5
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 2.8e-57 225.3 124 87.9
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 3.7e-57 224.9 123 87.0
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.7e-57 224.9 124 85.5
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 3.7e-57 224.9 124 85.5
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 4.8e-57 224.6 124 87.9
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 4.8e-57 224.6 123 86.2
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 1.1e-56 223.4 124 85.5
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 1.1e-56 223.4 123 86.2
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.4e-56 223.0 129 83.7
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 1.4e-56 223.0 122 87.7
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 1.8e-56 222.6 123 87.0
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 2.4e-56 222.2 124 85.5
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 5.3e-56 221.1 124 83.9
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 2.6e-55 218.8 123 84.6
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 2.6e-55 218.8 132 83.3
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 2.6e-55 218.8 123 83.7
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 4.5e-55 218.0 129 80.6
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 4.5e-55 218.0 123 83.7
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 7.6e-55 217.2 140 77.9
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 1.3e-54 216.5 125 83.2
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 1.7e-54 216.1 125 82.4
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 2.9e-54 215.3 128 79.7
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 2.9e-54 215.3 124 83.9
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 2.9e-54 215.3 124 83.9
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 6.5e-54 214.2 135 74.1
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 6.5e-54 214.2 125 82.4
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 8.4e-54 213.8 123 80.5
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 8.4e-54 213.8 152 71.1
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.1e-53 213.4 137 78.1
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 1.1e-53 213.4 123 82.1
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 1.1e-53 213.4 129 80.6
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 1.1e-53 213.4 129 80.6
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 1.4e-53 213.0 123 80.5
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.9e-53 212.6 128 82.0
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 2.5e-53 212.2 125 79.2
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 3.2e-53 211.8 123 80.5
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 3.2e-53 211.8 123 79.7
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 4.2e-53 211.5 128 79.7
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 5.5e-53 211.1 123 79.7
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 5.5e-53 211.1 128 79.7
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 9.3e-53 210.3 123 78.0
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 9.3e-53 210.3 122 78.7
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 9.3e-53 210.3 123 80.5
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 1.2e-52 209.9 128 78.1
Nn1g07991 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.2e-52 209.9 123 81.3
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.6e-52 209.5 122 82.0
Sp2g19040 Schrenkiella parvula HOM05D003583 ORTHO05D004169 1.6e-52 209.5 129 76.7
Nn3g20050 Nelumbo nucifera HOM05D002516 ORTHO05D002703 2.1e-52 209.1 126 79.4
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 2.7e-52 208.8 127 77.2
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 3.5e-52 208.4 127 77.2
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 4.6e-52 208.0 123 77.2
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 6.0e-52 207.6 123 77.2
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 6.0e-52 207.6 129 79.1
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 7.9e-52 207.2 124 79.8
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 7.9e-52 207.2 123 78.0
MBI11_g07418_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 7.9e-52 207.2 125 80.0
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 1.3e-51 206.5 127 76.4
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 1.3e-51 206.5 128 76.6
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 1.3e-51 206.5 123 79.7
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 1.8e-51 206.1 123 79.7
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 2.3e-51 205.7 131 72.5
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 3.0e-51 205.3 117 80.3
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 3.9e-51 204.9 123 77.2
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 3.9e-51 204.9 123 77.2
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 5.1e-51 204.5 124 79.8
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 6.7e-51 204.1 128 78.9
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 8.7e-51 203.8 123 78.0
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 8.7e-51 203.8 123 81.3
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 1.1e-50 203.4 126 76.2
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 2.5e-50 202.2 129 73.6
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 2.5e-50 202.2 129 73.6
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 2.5e-50 202.2 129 73.6
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 2.5e-50 202.2 129 73.6
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 2.5e-50 202.2 129 73.6
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 2.5e-50 202.2 124 81.5
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 3.3e-50 201.8 125 78.4
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 3.3e-50 201.8 123 78.0
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 1.6e-49 199.5 122 80.3
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 6.3e-49 197.6 124 75.0
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 1.1e-48 196.8 129 72.9
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 1.4e-48 196.4 116 75.0
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 1.4e-48 196.4 123 76.4
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 2.4e-48 195.7 127 74.0
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 2.4e-48 195.7 114 75.4
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 3.1e-48 195.3 114 75.4
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 6.9e-48 194.1 201 52.7
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.2e-47 193.4 123 74.0
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 1.5e-47 193.0 133 70.7
CDE06G1446 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 1.0e-46 190.3 123 76.4
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 1.7e-46 189.5 127 75.6
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 6.5e-46 187.6 123 72.4
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 2.1e-44 182.6 124 66.9
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 5.1e-43 177.9 123 67.5
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 3.3e-42 175.3 128 69.5
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 3.3e-42 175.3 128 69.5
Os11g0463600 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 3.1e-40 168.7 119 63.9
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 1.0e-38 163.7 128 67.2
Lalb_Chr19g0125851 Lupinus albus HOM05D003583 ORTHO05D004169 1.1e-37 160.2 124 62.9
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.6e-36 156.4 95 72.6
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 5.7e-34 147.9 121 60.3
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 2.8e-33 145.6 96 71.9
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 1.3e-30 136.7 100 60.0
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 9.4e-29 130.6 83 67.5
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 2.6e-26 122.5 86 57.0
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 1.6e-23 113.2 99 53.5
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 1.0e-22 110.5 60 88.3
BcaB08g36000 Brassica carinata HOM05D003583 ORTHO05D004169 1.3e-22 110.2 62 71.0
Rhsim01G0253000 Rhododendron simsii HOM05D003583 ORTHO05D004169 1.2e-20 103.6 60 80.0
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 6.1e-20 101.3 105 50.5
Zm00001eb115380 Zea mays HOM05D003583 ORTHO05D004169 1.0e-19 100.5 114 42.1
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 1.4e-19 100.1 87 59.8
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 1.4e-19 100.1 101 47.5
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 1.7e-17 93.2 56 78.6
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 7.0e-16 87.8 112 41.1
Nn7g37781 Nelumbo nucifera HOM05D003583 ORTHO05D004169 7.7e-15 84.3 98 49.0
Nn6g33306 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.9e-13 79.7 74 50.0
Gohir.A04G076300 Gossypium hirsutum HOM05D003583 ORTHO05D004169 5.5e-13 78.2 52 73.1
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 2.7e-12 75.9 97 40.2
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 4.7e-12 75.1 113 37.2
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 4.7e-12 75.1 117 37.6
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.4e-11 73.6 133 33.8
Oeu029228.1 Olea europaea HOM05D001181 ORTHO05D001678 3.4e-10 68.9 39 76.9
Nn2g10533 Nelumbo nucifera HOM05D003583 ORTHO05D004169 5.7e-10 68.2 74 48.6
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 4.1e-08 62.0 128 28.9
Lalb_Chr07g0194221 Lupinus albus HOM05D003583 ORTHO05D004169 1.3e-06 57.0 43 62.8


User provided reference genes

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