Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 9.4e-117 423.7 241 100.0
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 2.3e-86 322.8 238 83.6
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 6.6e-86 321.2 238 71.8
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.1e-83 313.9 237 80.6
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 2.1e-79 299.7 239 69.0
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 8.1e-76 287.7 227 68.3
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 6.8e-75 284.6 240 66.2
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 2.9e-73 279.3 239 64.9
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.0e-70 270.8 239 74.1
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.9e-69 266.5 241 62.7
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 6.9e-67 258.1 241 59.8
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 6.4e-65 251.5 241 58.9
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.6e-63 246.9 230 58.7
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.1e-63 246.5 282 51.1
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 3.6e-60 235.7 240 58.3
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.4e-56 223.8 234 54.7
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 4.2e-56 222.2 239 54.4
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.7e-55 219.5 245 52.7
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 3.5e-55 219.2 239 53.1
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 3.5e-55 219.2 239 54.0
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 4.6e-55 218.8 239 54.8
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 7.9e-55 218.0 241 52.3
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 7.9e-55 218.0 237 54.0
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.3e-54 217.2 220 56.4
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.3e-54 216.5 236 53.8
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 3.0e-54 216.1 239 52.7
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 3.9e-54 215.7 247 52.2
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 3.9e-54 215.7 244 51.2
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 5.1e-54 215.3 239 56.1
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 8.7e-54 214.5 234 53.8
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 8.7e-54 214.5 237 53.6
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 3.3e-53 212.6 241 50.6
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 4.3e-53 212.2 234 53.0
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 9.6e-53 211.1 239 54.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.3e-52 210.7 239 52.3
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.6e-52 210.3 239 51.5
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.6e-52 210.3 243 51.0
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 3.7e-52 209.1 236 53.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 3.7e-52 209.1 234 52.6
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.2e-52 208.4 239 59.4
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.4e-51 207.2 234 51.3
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.1e-51 206.1 242 50.0
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 4.0e-51 205.7 241 56.8
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.3e-51 205.3 234 50.4
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.3e-51 205.3 239 50.6
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.9e-51 204.9 232 52.2
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 9.0e-51 204.5 246 50.0
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.2e-50 204.1 203 57.1
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.2e-50 204.1 244 49.2
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.5e-50 203.8 240 50.4
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.0e-50 203.4 232 51.7
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.4e-50 202.6 232 51.3
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 4.5e-50 202.2 242 52.5
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 4.5e-50 202.2 243 51.0
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.0e-49 201.1 201 57.2
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-49 200.3 226 53.1
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.9e-49 199.5 239 50.6
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 2.9e-49 199.5 311 42.8
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.9e-49 199.5 131 77.1
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 4.9e-49 198.7 239 49.8
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.1e-48 197.6 226 52.7
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.4e-48 197.2 202 55.9
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.9e-48 196.8 226 52.7
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.9e-48 196.8 202 56.4
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 7.1e-48 194.9 202 55.9
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 9.3e-48 194.5 237 50.6
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-47 193.7 213 54.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.6e-47 193.7 213 54.5
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.6e-47 193.7 202 56.4
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.6e-47 193.7 212 51.4
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.7e-47 193.0 198 56.6
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.5e-47 192.6 236 49.6
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 4.6e-47 192.2 231 48.5
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 6.0e-47 191.8 197 56.9
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 6.0e-47 191.8 234 49.6
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 6.0e-47 191.8 230 49.6
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 1.3e-46 190.7 244 57.8
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.8e-46 190.3 235 49.8
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 2.3e-46 189.9 242 51.7
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 3.0e-46 189.5 234 50.0
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 3.0e-46 189.5 133 73.7
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.9e-46 189.1 213 53.1
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.9e-46 189.1 236 49.2
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.9e-46 189.1 236 49.2
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.5e-45 187.2 133 72.2
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.3e-45 186.0 202 54.0
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 2.1e-44 183.3 212 52.8
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 2.8e-44 183.0 324 40.7
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 6.3e-44 181.8 206 51.9
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 8.2e-44 181.4 242 50.0
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.4e-43 180.6 202 53.5
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.4e-43 180.6 222 49.1
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.4e-43 180.6 225 47.1
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 2.4e-43 179.9 226 49.1
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.1e-43 179.5 210 49.5
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 3.1e-43 179.5 245 48.6
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 4.1e-43 179.1 207 50.7
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.1e-43 179.1 134 69.4
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 9.0e-43 177.9 208 51.4
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.0e-43 177.9 128 68.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.5e-42 177.2 133 69.2
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.5e-42 177.2 208 56.2
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 3.4e-42 176.0 205 50.7
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 3.4e-42 176.0 280 42.5
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.4e-42 176.0 240 57.5
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.3e-41 174.1 231 47.2
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 2.9e-41 172.9 134 68.7
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.9e-41 172.9 124 71.8
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 2.9e-41 172.9 186 54.8
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.9e-41 172.9 220 47.7
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 3.8e-41 172.6 254 45.3
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 3.8e-41 172.6 215 49.8
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 6.5e-41 171.8 204 52.0
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.4e-40 170.6 239 46.4
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.9e-40 170.2 216 48.6
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.5e-40 169.9 220 48.2
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 4.2e-40 169.1 238 45.0
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 7.2e-40 168.3 223 45.7
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.2e-39 167.5 210 48.6
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.6e-39 167.2 202 50.0
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 2.1e-39 166.8 220 47.7
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 2.7e-39 166.4 216 47.7
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 3.6e-39 166.0 205 48.8
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 4.6e-39 165.6 131 64.1
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 6.1e-39 165.2 216 47.2
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 6.1e-39 165.2 216 47.2
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.8e-38 163.7 205 48.8
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.8e-38 163.7 134 64.9
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 1.8e-38 163.7 95 84.2
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 3.0e-38 162.9 126 65.9
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 3.0e-38 162.9 158 60.1
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 6.7e-38 161.8 225 45.8
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 6.7e-38 161.8 97 80.4
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.1e-37 161.0 226 46.5
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 2.5e-37 159.8 242 42.6
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 9.7e-37 157.9 204 48.0
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 2.2e-36 156.8 97 80.4
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 2.8e-36 156.4 211 46.9
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 3.7e-36 156.0 119 67.2
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-35 153.7 102 76.5
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 4.5e-34 149.1 199 48.2
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 7.7e-34 148.3 211 45.5
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.2e-33 146.7 115 67.8
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 5.0e-33 145.6 95 73.7
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 5.0e-33 145.6 90 76.7
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 8.5e-33 144.8 121 62.8
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.1e-32 144.4 97 69.1
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.4e-32 144.1 120 60.8
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.2e-32 142.9 95 74.7
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 7.2e-32 141.7 100 69.0
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.6e-31 140.6 88 76.1
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.6e-31 140.6 88 76.1
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.3e-30 136.7 115 60.9
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 7.4e-29 131.7 203 42.9
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 6.3e-28 128.6 195 43.6
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.5e-26 124.0 81 72.8
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.2e-25 120.2 86 64.0
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 3.7e-20 102.8 165 43.6
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 4.8e-20 102.4 84 61.9
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.9e-16 90.5 53 84.9
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 7.2e-16 88.6 87 47.1
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.2e-15 87.8 50 86.0
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.8e-11 73.9 205 31.7
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 2.4e-11 73.6 92 41.3
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 4.1e-11 72.8 116 39.7
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 3.5e-10 69.7 40 80.0
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 4.2e-08 62.8 43 67.4


User provided reference genes

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