Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 3.2e-146 521.9 305 100.0
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 4.9e-86 322.0 316 63.9
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 4.9e-86 322.0 316 63.9
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 9.2e-85 317.8 319 61.4
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 3.5e-68 262.7 264 65.5
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 4.3e-66 255.8 263 62.7
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 7.4e-66 255.0 316 51.9
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 7.1e-61 238.4 319 53.6
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 1.2e-60 237.7 266 59.4
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.6e-60 237.3 359 48.2
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 9.3e-53 211.5 277 60.3
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 2.8e-49 199.9 152 71.1
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 4.1e-48 196.1 244 50.0
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 4.1e-48 196.1 238 54.6
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.0e-47 193.7 265 52.8
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.0e-46 191.4 250 49.2
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 2.9e-46 189.9 250 50.8
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 2.9e-46 189.9 317 47.6
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 6.5e-46 188.7 257 47.5
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 8.5e-46 188.3 241 53.5
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 2.1e-44 183.7 263 46.4
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.0e-43 181.4 244 45.5
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 9.7e-42 174.9 253 45.5
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.3e-41 174.5 237 50.6
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 2.8e-41 173.3 256 49.2
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 4.8e-41 172.6 287 42.5
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 9.1e-40 168.3 227 51.5
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 9.1e-40 168.3 267 44.2
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 9.1e-40 168.3 139 65.5
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.2e-39 167.9 268 45.5
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 4.5e-39 166.0 285 43.2
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 7.7e-39 165.2 268 44.4
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 1.0e-38 164.9 197 51.3
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.3e-38 164.5 246 50.0
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 5.0e-38 162.5 227 49.3
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 1.1e-37 161.4 241 46.9
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 9.4e-37 158.3 227 50.7
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 9.4e-37 158.3 267 45.3
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.2e-36 157.9 262 45.8
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 4.6e-36 156.0 227 50.2
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 4.6e-36 156.0 227 50.2
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 1.0e-35 154.8 238 45.4
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 8.8e-35 151.8 279 41.9
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 2.0e-34 150.6 267 46.1
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 2.6e-34 150.2 257 40.9
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 4.4e-34 149.4 244 43.4
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.4e-34 148.7 268 45.1
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 7.4e-34 148.7 237 46.4
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 7.4e-34 148.7 227 44.9
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.3e-33 147.9 123 66.7
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.3e-33 147.9 123 66.7
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 1.3e-33 147.9 209 45.5
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.7e-33 147.5 148 56.8
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.8e-33 146.0 245 44.1
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.2e-33 145.2 206 49.5
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.1e-32 144.8 242 42.6
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.1e-32 143.3 230 41.7
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.1e-32 143.3 166 50.6
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 4.1e-32 142.9 145 57.9
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 9.1e-32 141.7 202 50.5
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 2.0e-31 140.6 138 55.1
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 4.5e-31 139.4 279 39.1
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 7.7e-31 138.7 233 42.5
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.0e-30 138.3 273 40.3
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.7e-30 137.5 258 39.9
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.7e-30 137.5 237 39.7
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 1.7e-30 137.5 224 43.8
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 2.2e-30 137.1 135 56.3
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 2.2e-30 137.1 118 66.9
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 3.8e-30 136.3 196 44.9
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 5.0e-30 136.0 261 39.1
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.4e-29 134.4 165 52.1
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.5e-29 133.7 200 45.5
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 4.2e-29 132.9 277 39.4
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 4.2e-29 132.9 135 54.8
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 7.2e-29 132.1 272 36.4
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.2e-28 131.3 249 41.4
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.1e-28 130.6 228 43.0
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.6e-28 129.8 282 36.5
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.4e-27 127.9 155 51.0
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.8e-27 127.5 273 39.2
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.3e-27 127.1 269 38.7
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 8.8e-27 125.2 139 53.2
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 2.0e-26 124.0 242 38.0
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.6e-26 123.6 252 42.5
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.6e-26 123.6 252 42.5
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 2.6e-26 123.6 135 52.6
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 4.4e-26 122.9 129 55.8
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 9.7e-26 121.7 121 52.9
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 9.7e-26 121.7 121 52.9
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 9.7e-26 121.7 240 41.7
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 1.7e-25 120.9 159 52.2
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 2.8e-25 120.2 253 37.9
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.8e-25 119.4 176 48.9
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 2.4e-24 117.1 141 48.9
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 3.1e-24 116.7 151 50.3
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 7.0e-24 115.5 198 42.9
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 9.1e-24 115.2 242 37.6
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 9.1e-24 115.2 272 40.8
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 9.1e-24 115.2 242 37.6
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 9.1e-24 115.2 242 37.6
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 9.1e-24 115.2 267 35.2
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.2e-23 114.8 239 39.7
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.6e-23 114.4 278 37.4
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.0e-23 114.0 156 49.4
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 4.5e-23 112.8 140 55.0
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 4.5e-23 112.8 272 37.9
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.7e-23 112.1 176 43.8
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 2.9e-22 110.2 54 94.4
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 5.0e-22 109.4 123 49.6
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 8.5e-22 108.6 259 36.7
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.1e-21 108.2 124 51.6
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 1.9e-21 107.5 232 38.4
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 5.5e-21 105.9 252 37.3
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 9.4e-21 105.1 118 48.3
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.2e-20 104.8 138 52.2
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 2.1e-20 104.0 183 43.2
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 4.7e-20 102.8 125 55.2
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 4.7e-20 102.8 122 46.7
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 6.1e-20 102.4 268 35.8
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 2.3e-19 100.5 200 43.5
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 8.8e-19 98.6 132 43.9
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 3.3e-18 96.7 122 45.1
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.8e-17 93.6 126 50.8
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 2.7e-15 87.0 122 45.9
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 3.2e-13 80.1 159 38.4
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 7.2e-13 79.0 64 60.9
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 6.1e-12 75.9 127 41.7
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 4.0e-11 73.2 128 41.4
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 5.2e-11 72.8 272 32.4
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.5e-10 68.9 154 40.9
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 2.2e-09 67.4 122 43.4
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 9.1e-08 62.0 30 93.3
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 1.2e-07 61.6 144 37.5
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 5.9e-07 59.3 73 42.5
unitig_26.g9437 Utricularia gibba HOM05D005417 ORTHO05D002591 6.5e-06 55.8 52 53.8


User provided reference genes

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