Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.7e-73 279.3 146 100.0
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 6.1e-26 121.3 125 60.0
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 3.4e-21 105.5 125 52.8
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 3.4e-21 105.5 125 52.8
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 4.5e-21 105.1 125 55.2
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 5.9e-21 104.8 124 52.4
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.5e-19 99.4 125 51.2
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 5.5e-19 98.2 123 51.2
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 4.7e-18 95.1 125 47.2
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 8.0e-18 94.4 123 48.8
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 1.0e-17 94.0 125 49.6
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.4e-17 93.6 123 48.0
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 3.0e-17 92.4 125 48.8
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.0e-16 89.7 123 48.0
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.3e-15 87.0 125 44.8
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.7e-15 86.7 125 44.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.8e-15 85.9 125 44.0
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.8e-15 85.1 124 43.5
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.8e-15 85.1 124 43.5
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 4.8e-15 85.1 125 44.8
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 4.8e-15 85.1 123 47.2
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 6.3e-15 84.7 123 44.7
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 6.3e-15 84.7 123 44.7
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 6.3e-15 84.7 123 43.9
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 6.3e-15 84.7 123 45.5
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 6.3e-15 84.7 125 43.2
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 6.3e-15 84.7 125 48.0
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 1.4e-14 83.6 122 46.7
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.4e-14 83.6 65 66.2
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 2.4e-14 82.8 125 45.6
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 4.1e-14 82.0 125 46.4
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.1e-14 82.0 125 48.0
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 4.1e-14 82.0 125 45.6
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 9.1e-14 80.9 124 42.7
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 9.1e-14 80.9 124 44.4
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.2e-13 80.5 125 44.0
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.2e-13 80.5 125 44.8
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.6e-13 80.1 125 42.4
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.0e-13 79.7 126 42.1
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 2.0e-13 79.7 123 42.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.0e-13 79.7 125 44.0
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.0e-13 79.7 125 41.6
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 2.6e-13 79.3 124 43.5
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 2.6e-13 79.3 125 42.4
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.6e-13 79.3 123 42.3
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 5.9e-13 78.2 125 41.6
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 7.7e-13 77.8 125 42.4
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 7.7e-13 77.8 125 41.6
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 7.7e-13 77.8 125 41.6
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.0e-12 77.4 125 42.4
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.0e-12 77.4 125 40.0
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.3e-12 77.0 125 40.0
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.3e-12 77.0 125 43.2
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.7e-12 76.6 126 40.5
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 2.2e-12 76.3 125 40.8
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 2.2e-12 76.3 122 42.6
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 5.0e-12 75.1 124 41.1
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 6.5e-12 74.7 125 39.2
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.1e-11 73.9 125 40.8
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 1.1e-11 73.9 132 39.4
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-11 73.9 132 39.4
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-11 73.9 132 39.4
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.5e-11 73.6 123 41.5
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.9e-11 73.2 130 40.0
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 2.5e-11 72.8 125 38.4
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.5e-11 72.8 124 40.3
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 2.5e-11 72.8 123 40.7
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.2e-11 72.0 124 39.5
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 4.2e-11 72.0 132 39.4
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 7.2e-11 71.2 123 43.1
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 7.2e-11 71.2 125 40.0
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.4e-11 70.9 132 37.9
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.1e-10 69.7 115 40.0
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 4.7e-10 68.6 69 59.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 6.1e-10 68.2 126 38.9
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.0e-09 67.4 129 39.5
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-09 66.6 71 53.5
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 3.0e-09 65.9 125 38.4
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 4.0e-09 65.5 125 37.6
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.7e-09 64.7 69 56.5
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 8.8e-09 64.3 69 56.5
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.8e-09 64.3 69 56.5
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.2e-08 63.9 125 36.0
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.2e-08 63.9 79 46.8
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.2e-08 63.9 122 35.2
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 2.6e-08 62.8 125 38.4
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.6e-08 62.8 123 37.4
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 4.4e-08 62.0 125 38.4
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.7e-08 61.6 63 57.1
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 7.5e-08 61.2 129 37.2
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.7e-07 60.1 69 53.6
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 2.2e-07 59.7 126 35.7
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 3.7e-07 58.9 123 37.4
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 6.3e-07 58.2 123 34.1
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.4e-06 57.0 123 36.6
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 2.4e-06 56.2 52 61.5
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 5.3e-06 55.1 123 36.6
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 5.3e-06 55.1 123 36.6
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 9.1e-06 54.3 123 31.7


User provided reference genes

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