Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03402_v3 Cicer arietinum L. HOM05D007085 ORTHO05D008828 3.2e-59 232.6 248 100.0
Psat1g009200 Pisum sativum HOM05D007085 ORTHO05D008828 7.9e-42 174.9 246 72.4
TPR.G29685 Trifolium pratense HOM05D007085 ORTHO05D008828 5.1e-41 172.2 246 63.0
Medtr2g072170 Medicago truncatula HOM05D007085 ORTHO05D008828 1.3e-39 167.5 236 69.5
arahy.Tifrunner.gnm1.ann1.10LGU9 Arachis hypogaea HOM05D007085 ORTHO05D008828 7.2e-19 98.6 239 60.7
PGR031G3190 Punica granatum HOM05D007085 ORTHO05D008828 3.6e-18 96.3 225 66.7
Lsat_1_v5_gn_9_101401 Lactuca sativa HOM05D007085 ORTHO05D008828 4.6e-18 95.9 61 67.2
ECA240G0168 Erigeron canadensis HOM05D007085 ORTHO05D008828 3.0e-17 93.2 61 65.6
arahy.Tifrunner.gnm1.ann1.L57236 Arachis hypogaea HOM05D007085 ORTHO05D008828 3.9e-17 92.8 239 59.8
CARHR089540 Cardamine hirsuta HOM05D007085 ORTHO05D008828 1.5e-16 90.9 61 63.9
Cpa.g.sc2050.1 Carica papaya HOM05D007085 ORTHO05D008828 1.5e-16 90.9 61 68.9
Oeu006136.1 Olea europaea HOM05D007085 ORTHO05D008828 2.0e-16 90.5 56 75.0
Prupe.4G152100 Prunus persica HOM05D007085 ORTHO05D008828 2.0e-16 90.5 61 65.6
Carub.0003s1428 Capsella rubella HOM05D007085 ORTHO05D008828 2.5e-16 90.1 61 62.3
Sed0002576 Sechium edule HOM05D007085 ORTHO05D008828 3.3e-16 89.7 61 67.2
Hma1.2p1_0587F.1_g184339 Hydrangea macrophylla HOM05D007085 ORTHO05D008828 4.3e-16 89.4 61 67.2
Hma1.2p1_0587F.1_g184370 Hydrangea macrophylla HOM05D007085 ORTHO05D008828 4.3e-16 89.4 61 67.2
Nitab4.5_0000923g0040 Nicotiana tabacum HOM05D000021 ORTHO05D008828 4.3e-16 89.4 61 68.9
MELO3C025593.2 Cucumis melo HOM05D007085 ORTHO05D008828 5.7e-16 89.0 61 63.9
CsaV3_4G032620 Cucumis sativus L. HOM05D007085 ORTHO05D008828 5.7e-16 89.0 61 63.9
HanXRQChr03g0074311 Helianthus annuus HOM05D007085 ORTHO05D008828 5.7e-16 89.0 61 62.3
ClCG11G016990 Citrullus lanatus HOM05D007085 ORTHO05D008828 7.4e-16 88.6 61 62.3
AL3G26910 Arabidopsis lyrata HOM05D007085 ORTHO05D008828 1.3e-15 87.8 61 62.3
AT3G14580 Arabidopsis thaliana HOM05D007085 ORTHO05D008828 1.3e-15 87.8 61 62.3
Sp3g12850 Schrenkiella parvula HOM05D007085 ORTHO05D008828 1.3e-15 87.8 61 62.3
Peaxi162Scf00573g00042 Petunia axillaris HOM05D007085 ORTHO05D008828 1.7e-15 87.4 57 70.2
Actinidia03646 Actinidia chinensis HOM05D007085 ORTHO05D008828 2.2e-15 87.0 61 63.9
Solyc10g007520.3 Solanum lycopersicum HOM05D007085 ORTHO05D008828 2.2e-15 87.0 61 67.2
Sopen10g003460 Solanum pennellii HOM05D007085 ORTHO05D008828 2.2e-15 87.0 61 67.2
RhsimUnG0205600 Rhododendron simsii HOM05D007085 ORTHO05D008828 2.8e-15 86.7 56 67.9
vmacro09426 Vaccinium macrocarpon HOM05D007085 ORTHO05D008828 2.8e-15 86.7 61 63.9
BcaB06g25373 Brassica carinata HOM05D007085 ORTHO05D008828 3.7e-15 86.3 61 60.7
Aa31LG8G1790 Aethionema arabicum HOM05D000230 ORTHO05D000176 4.8e-15 85.9 61 59.0
Cfa019473 Carpinus fangiana HOM05D007085 ORTHO05D008828 4.8e-15 85.9 61 62.3
CiPaw.12G046300 Carya illinoinensis HOM05D007085 ORTHO05D008828 6.3e-15 85.5 61 63.9
Haze_08476 Corylus avellana HOM05D007085 ORTHO05D008828 6.3e-15 85.5 61 62.3
Lj8P143T18 Lonicera japonica HOM05D007085 ORTHO05D008828 6.3e-15 85.5 61 63.9
PGSC0003DMG400044445 Solanum tuberosum HOM05D007085 ORTHO05D008828 6.3e-15 85.5 61 65.6
PGSC0003DMG402021252 Solanum tuberosum HOM05D007085 ORTHO05D008828 6.3e-15 85.5 61 65.6
CSS0001065 Camellia sinensis var. sinensis HOM05D007085 ORTHO05D008828 8.2e-15 85.1 61 62.3
Thhalv10020856m.g Eutrema salsugineum HOM05D007085 ORTHO05D008828 8.2e-15 85.1 61 60.7
SHI27645 Sapria himalayana HOM05D007085 ORTHO05D008828 8.2e-15 85.1 58 69.0
BcaC05g29059 Brassica carinata HOM05D007085 ORTHO05D008828 1.1e-14 84.7 61 60.7
C05p52690 Brassica napus HOM05D007085 ORTHO05D008828 1.1e-14 84.7 61 60.7
QL04p068992 Quercus lobata HOM05D007085 ORTHO05D008828 1.1e-14 84.7 61 62.3
Ciclev10020422m.g Citrus clementina HOM05D007085 ORTHO05D008828 1.4e-14 84.3 61 62.3
SGA_v2.0_scaffold34G13702 Striga asiatica HOM05D007085 ORTHO05D008828 2.4e-14 83.6 61 59.0
BraA05t22296Z Brassica rapa HOM05D007085 ORTHO05D008828 3.1e-14 83.2 61 59.0
AUR62019703 Chenopodium quinoa HOM05D007085 ORTHO05D008828 4.1e-14 82.8 61 60.7
Dinv13328 Davidia involucrata HOM05D007085 ORTHO05D008828 4.1e-14 82.8 61 62.3
Eucgr.F03214 Eucalyptus grandis HOM05D007085 ORTHO05D008828 6.9e-14 82.0 61 60.7
Oeu009876.3 Olea europaea HOM05D007085 ORTHO05D008828 6.9e-14 82.0 56 71.4
BolC5t33948H Brassica oleracea HOM05D007085 ORTHO05D008828 9.1e-14 81.6 61 57.4
A05p34840 Brassica napus HOM05D007085 ORTHO05D008828 1.2e-13 81.3 61 57.4
AUR62037984 Chenopodium quinoa HOM05D007085 ORTHO05D008828 1.2e-13 81.3 61 60.7
DCAR_021048 Daucus carota HOM05D007085 ORTHO05D008828 1.2e-13 81.3 57 63.2
Aqoxy2G00336 Aquilegia oxysepala HOM05D007085 ORTHO05D008828 1.5e-13 80.9 61 59.0
Lj3g0005838 Lotus japonicus HOM05D007085 ORTHO05D008828 2.0e-13 80.5 61 57.4
SalBow8G4060 Salvia bowleyana HOM05D007085 ORTHO05D008828 2.0e-13 80.5 61 59.0
MD11G1276100 Malus domestica HOM05D007085 ORTHO05D008828 3.4e-13 79.7 61 57.4
CANSAT56G2932 Cannabis sativa HOM05D007085 ORTHO05D008828 4.5e-13 79.3 61 55.7
Manes.01G152600 Manihot esculenta HOM05D007085 ORTHO05D008828 4.5e-13 79.3 58 62.1
Migut.M00624 Erythranthe guttata HOM05D007085 ORTHO05D008828 5.9e-13 79.0 61 57.4
RcHm_v2.0_Chr5g0028281 Rosa chinensis HOM05D007085 ORTHO05D008828 5.9e-13 79.0 53 66.0
EL10Ac4g08466 Beta vulgaris HOM05D007085 ORTHO05D008828 1.0e-12 78.2 61 57.4
TWI60G0193 Tripterygium wilfordii HOM05D007085 ORTHO05D008828 1.0e-12 78.2 61 59.0
Ah.04g163870 Amaranthus hybridus HOM05D007085 ORTHO05D008828 1.7e-12 77.4 61 59.0
BcaC05g29057 Brassica carinata HOM05D007085 ORTHO05D008828 2.2e-12 77.0 61 59.0
Cc05_g10440 Coffea canephora HOM05D007085 ORTHO05D008828 2.9e-12 76.6 57 57.9
FvH4_3g16970 Fragaria vesca HOM05D007085 ORTHO05D008828 5.0e-12 75.9 58 55.2
FAN11G1303 Fragaria x ananassa HOM05D007085 ORTHO05D008828 5.0e-12 75.9 58 55.2
FAN16G1935 Fragaria x ananassa HOM05D007085 ORTHO05D008828 5.0e-12 75.9 58 55.2
CAN.G4458.1 Capsicum annuum HOM05D007085 ORTHO05D008828 1.1e-11 74.7 61 57.4
CAN.G904.26 Capsicum annuum HOM05D007085 ORTHO05D008828 1.1e-11 74.7 61 57.4
CAN.G904.38 Capsicum annuum HOM05D007085 ORTHO05D008828 1.1e-11 74.7 61 57.4
Nn3g20730 Nelumbo nucifera HOM05D007085 ORTHO05D008828 1.1e-11 74.7 61 50.8
ATR0605G112 Amborella trichopoda HOM05D007085 ORTHO05D008828 1.9e-11 73.9 61 54.1
Sc03g0010950 Simmondsia chinensis HOM05D007085 ORTHO05D008828 1.9e-11 73.9 61 55.7
Os04g0618050 Oryza sativa ssp. japonica HOM05D007085 ORTHO05D008828 3.2e-11 73.2 57 54.4
Sc03g0010930 Simmondsia chinensis HOM05D007085 ORTHO05D008828 3.2e-11 73.2 61 55.7
CDE04G0400 Ceratophyllum demersum HOM05D007085 ORTHO05D008828 4.2e-11 72.8 61 50.8
HPP92_011319 Vanilla planifolia HOM05D007085 ORTHO05D008828 7.2e-11 72.0 61 50.8
VMungo1080G1467 Vigna mungo HOM05D007085 ORTHO05D008828 1.2e-10 71.2 54 64.8
PSO063G4137 Papaver somniferum HOM05D007085 ORTHO05D008828 2.1e-10 70.5 61 50.8
Potri.001G379500 Populus trichocarpa HOM05D007085 ORTHO05D008828 2.7e-10 70.1 58 53.4
Sabra16G0250000 Salix brachista HOM05D007085 ORTHO05D008828 2.7e-10 70.1 58 53.4
TAR627G0225 Trochodendron aralioides HOM05D007085 ORTHO05D008828 2.7e-10 70.1 61 50.8
Phvul.002G044000 Phaseolus vulgaris HOM05D007085 ORTHO05D008828 4.7e-10 69.3 53 64.2
Lalb_Chr25g0285531 Lupinus albus HOM05D007085 ORTHO05D008828 1.0e-09 68.2 91 40.7
Zm00001eb431040 Zea mays HOM05D007085 ORTHO05D008828 1.0e-09 68.2 57 50.9
Duzib268G0775 Durio zibethinus HOM05D007085 ORTHO05D008828 3.0e-09 66.6 46 60.9
Gorai.007G334700 Gossypium raimondii HOM05D007085 ORTHO05D008828 5.1e-09 65.9 48 60.4
Gohir.A11G290600 Gossypium hirsutum HOM05D007085 ORTHO05D008828 6.7e-09 65.5 46 60.9
Thecc.07G142300 Theobroma cacao HOM05D007085 ORTHO05D008828 6.7e-09 65.5 46 58.7
Gohir.D11G302200 Gossypium hirsutum HOM05D007085 ORTHO05D008828 8.8e-09 65.1 46 60.9
Gorai.007G332700 Gossypium raimondii HOM05D007085 ORTHO05D008828 8.8e-09 65.1 46 60.9
Gorai.007G334000 Gossypium raimondii HOM05D007085 ORTHO05D008828 8.8e-09 65.1 46 60.9
MBI07_g26363_MAGBIO Magnolia biondii HOM05D007085 ORTHO05D008828 1.1e-08 64.7 47 51.1
Glyma.15G245700 Glycine max HOM05D007085 ORTHO05D008828 2.6e-08 63.5 54 57.4
COL.COLO4_17436 Corchorus olitorius HOM05D007085 ORTHO05D008828 2.2e-07 60.5 43 53.5
Gorai.007G334300 Gossypium raimondii HOM05D007085 ORTHO05D008828 3.7e-07 59.7 46 58.7
HanXRQChr10g0296911 Helianthus annuus HOM05D007085 ORTHO05D008828 3.1e-06 56.6 61 47.5
THA.LOC104822596 Tarenaya hassleriana HOM05D007085 ORTHO05D008828 5.3e-06 55.8 44 54.5


User provided reference genes

Program Settings