Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03374_v3 Cicer arietinum L. HOM05D002294 ORTHO05D002367 1.7e-88 329.3 164 100.0
Ca_20195_v3 Cicer arietinum L. HOM05D002294 ORTHO05D002367 6.3e-72 274.2 157 89.8
Psat7g123320 Pisum sativum HOM05D002294 ORTHO05D002367 7.7e-54 214.2 160 73.8
TPR.G30742 Trifolium pratense HOM05D002294 ORTHO05D002367 3.7e-48 195.3 159 68.6
Medtr3g058620 Medicago truncatula HOM05D002294 ORTHO05D002367 6.1e-43 177.9 159 65.4
Glyma.18G078700 Glycine max HOM05D002294 ORTHO05D002367 2.4e-39 166.0 165 58.2
Phvul.006G055700 Phaseolus vulgaris HOM05D002294 ORTHO05D002367 3.9e-37 158.7 166 59.6
VMungo0540G0960 Vigna mungo HOM05D002294 ORTHO05D002367 9.5e-36 154.1 165 57.0
Lalb_Chr25g0286841 Lupinus albus HOM05D002294 ORTHO05D002367 3.6e-35 152.1 164 59.1
Glyma.08G265900 Glycine max HOM05D002294 ORTHO05D002367 6.2e-35 151.4 165 56.4
arahy.Tifrunner.gnm1.ann1.D3JFX3 Arachis hypogaea HOM05D002294 ORTHO05D002367 2.0e-25 119.8 165 47.3
Lj6g0017256 Lotus japonicus HOM05D002294 ORTHO05D002367 1.2e-22 110.5 157 49.0
Haze_17593 Corylus avellana HOM05D002294 ORTHO05D002367 1.6e-22 110.2 140 47.9
Haze_11976 Corylus avellana HOM05D002294 ORTHO05D002367 2.7e-22 109.4 138 48.6
MD06G1165200 Malus domestica HOM05D002294 ORTHO05D002367 6.6e-21 104.8 79 63.3
MD14G1170700 Malus domestica HOM05D002294 ORTHO05D002367 1.1e-20 104.0 95 61.1
Haze_11924 Corylus avellana HOM05D002294 ORTHO05D002367 2.5e-20 102.8 78 64.1
Cfa015569 Carpinus fangiana HOM05D002294 ORTHO05D002367 3.3e-20 102.4 78 64.1
Sc13g0003620 Simmondsia chinensis HOM05D002294 ORTHO05D002367 2.8e-19 99.4 130 44.6
EL10Ac1g00885 Beta vulgaris HOM05D002294 ORTHO05D002367 6.2e-19 98.2 106 50.9
CsaV3_1G014020 Cucumis sativus L. HOM05D000724 ORTHO05D002367 1.4e-18 97.1 125 46.4
Cfa008892 Carpinus fangiana HOM05D000235 ORTHO05D000147 1.8e-18 96.7 78 65.4
CSS0020221 Camellia sinensis var. sinensis HOM05D002294 ORTHO05D002367 2.4e-18 96.3 78 62.8
CiPaw.06G091400 Carya illinoinensis HOM05D002294 ORTHO05D002367 2.4e-18 96.3 121 47.9
ClCG01G013640 Citrullus lanatus HOM05D002294 ORTHO05D002367 3.1e-18 95.9 100 54.0
Potri.012G086800 Populus trichocarpa HOM05D002294 ORTHO05D002367 3.1e-18 95.9 78 62.8
QL03p071250 Quercus lobata HOM05D002294 ORTHO05D002367 8.9e-18 94.4 110 51.8
Sed0010894 Sechium edule HOM05D002294 ORTHO05D002367 8.9e-18 94.4 150 42.0
Eucgr.B00214 Eucalyptus grandis HOM05D002294 ORTHO05D002367 1.2e-17 94.0 79 60.8
Prupe.5G164800 Prunus persica HOM05D002294 ORTHO05D002367 1.5e-17 93.6 79 59.5
Ciclev10022242m.g Citrus clementina HOM05D002294 ORTHO05D002367 2.0e-17 93.2 98 55.1
Sabra12G0062200 Salix brachista HOM05D002294 ORTHO05D002367 2.6e-17 92.8 78 61.5
TWI23G0110 Tripterygium wilfordii HOM05D002294 ORTHO05D002367 2.6e-17 92.8 99 56.6
Atru.chr9.2591 Acer truncatum HOM05D002294 ORTHO05D002367 3.4e-17 92.4 79 62.0
AUR62028643 Chenopodium quinoa HOM05D002294 ORTHO05D002367 3.4e-17 92.4 96 53.1
Lsat_1_v5_gn_4_77441 Lactuca sativa HOM05D002294 ORTHO05D002367 5.8e-17 91.7 92 53.3
AUR62008066 Chenopodium quinoa HOM05D002294 ORTHO05D002367 7.6e-17 91.3 96 52.1
Aa31LG3G15460 Aethionema arabicum HOM05D002294 ORTHO05D002367 9.9e-17 90.9 107 48.6
CSS0000839 Camellia sinensis var. sinensis HOM05D002294 ORTHO05D002367 9.9e-17 90.9 78 62.8
RcHm_v2.0_Chr7g0192461 Rosa chinensis HOM05D002294 ORTHO05D002367 9.9e-17 90.9 79 60.8
CANSAT64G2646 Cannabis sativa HOM05D002294 ORTHO05D002367 1.3e-16 90.5 78 61.5
MELO3C004891.2 Cucumis melo HOM05D002294 ORTHO05D002367 1.3e-16 90.5 126 44.4
Sed0005556 Sechium edule HOM05D002294 ORTHO05D002367 1.3e-16 90.5 71 63.4
RcHm_v2.0_Chr7g0192431 Rosa chinensis HOM05D002294 ORTHO05D002367 1.7e-16 90.1 79 59.5
Dinv11485 Davidia involucrata HOM05D002294 ORTHO05D002367 2.2e-16 89.7 91 54.9
arahy.Tifrunner.gnm1.ann1.171W8J Arachis hypogaea HOM05D002294 ORTHO05D002367 2.9e-16 89.4 163 42.9
AUR62004210 Chenopodium quinoa HOM05D002294 ORTHO05D002367 2.9e-16 89.4 91 52.7
Migut.O00165 Erythranthe guttata HOM05D002294 ORTHO05D002367 2.9e-16 89.4 124 46.8
Gohir.D12G188228 Gossypium hirsutum HOM05D002294 ORTHO05D002367 2.9e-16 89.4 103 52.4
BcaB01g05457 Brassica carinata HOM05D002294 ORTHO05D002367 3.8e-16 89.0 156 41.0
Hund17023 Selenicereus undatus HOM05D002294 ORTHO05D002367 4.9e-16 88.6 80 57.5
PGSC0003DMG400016394 Solanum tuberosum HOM05D004490 ORTHO05D002367 4.9e-16 88.6 78 60.3
Duzib205G0024 Durio zibethinus HOM05D002294 ORTHO05D002367 8.4e-16 87.8 79 62.0
Thhalv10014577m.g Eutrema salsugineum HOM05D002294 ORTHO05D002367 8.4e-16 87.8 106 47.2
Thecc.03G115800 Theobroma cacao HOM05D002294 ORTHO05D002367 8.4e-16 87.8 96 54.2
AUR62013638 Chenopodium quinoa HOM05D002294 ORTHO05D002367 1.1e-15 87.4 91 52.7
FvH4_5g06380 Fragaria vesca HOM05D002294 ORTHO05D002367 1.4e-15 87.0 78 57.7
FAN08G2480 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.4e-15 87.0 78 57.7
FAN18G1540 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.4e-15 87.0 78 57.7
Nn7g38397 Nelumbo nucifera HOM05D002294 ORTHO05D002367 1.4e-15 87.0 64 68.8
Sopen01g003860 Solanum pennellii HOM05D002294 ORTHO05D002367 1.4e-15 87.0 78 59.0
Ah.05g174260 Amaranthus hybridus HOM05D002294 ORTHO05D002367 1.9e-15 86.7 98 52.0
Carub.0006s1028 Capsella rubella HOM05D002294 ORTHO05D002367 1.9e-15 86.7 79 58.2
Dinv33811 Davidia involucrata HOM05D002294 ORTHO05D002367 1.9e-15 86.7 89 53.9
SalBow5G4275 Salvia bowleyana HOM05D002294 ORTHO05D002367 1.9e-15 86.7 82 54.9
Solyc01g008340.3 Solanum lycopersicum HOM05D002294 ORTHO05D002367 1.9e-15 86.7 78 59.0
BolC3t13108H Brassica oleracea HOM05D002294 ORTHO05D002367 2.4e-15 86.3 79 57.0
COL.COLO4_32207 Corchorus olitorius HOM05D002294 ORTHO05D002367 2.4e-15 86.3 78 61.5
Gohir.A07G056300 Gossypium hirsutum HOM05D002294 ORTHO05D002367 2.4e-15 86.3 110 48.2
Gohir.D07G060600 Gossypium hirsutum HOM05D002294 ORTHO05D002367 3.2e-15 85.9 110 47.3
Hma1.2p1_0221F.1_g093080 Hydrangea macrophylla HOM05D002294 ORTHO05D002367 3.2e-15 85.9 78 57.7
Nn1g09140 Nelumbo nucifera HOM05D002294 ORTHO05D002367 3.2e-15 85.9 83 57.8
SGA_v2.0_scaffold25G10794 Striga asiatica HOM05D002294 ORTHO05D002367 3.2e-15 85.9 56 73.2
THA.LOC104817995 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 3.2e-15 85.9 106 48.1
THA.LOC104806036 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 4.2e-15 85.5 57 73.7
C03p05970 Brassica napus HOM05D002294 ORTHO05D002367 5.4e-15 85.1 79 57.0
CAN.G282.40 Capsicum annuum HOM05D002294 ORTHO05D002367 5.4e-15 85.1 78 57.7
HanXRQChr16g0504741 Helianthus annuus HOM05D002294 ORTHO05D002367 5.4e-15 85.1 79 54.4
GSVIVG01007636001 Vitis vinifera HOM05D002294 ORTHO05D002367 5.4e-15 85.1 79 54.4
Sp6g31850 Schrenkiella parvula HOM05D002294 ORTHO05D002367 7.1e-15 84.7 79 57.0
Cpa.g.sc59.127 Carica papaya HOM05D002294 ORTHO05D002367 1.2e-14 84.0 143 39.9
Nitab4.5_0009336g0020 Nicotiana tabacum HOM05D002294 ORTHO05D002367 1.2e-14 84.0 78 60.3
TAR374G1207 Trochodendron aralioides HOM05D002294 ORTHO05D002367 1.2e-14 84.0 79 57.0
CARHR201460 Cardamine hirsuta HOM05D002294 ORTHO05D002367 2.1e-14 83.2 107 46.7
Peaxi162Scf00021g02521 Petunia axillaris HOM05D002294 ORTHO05D002367 2.1e-14 83.2 78 57.7
ECA248G3964 Erigeron canadensis HOM05D002294 ORTHO05D002367 2.7e-14 82.8 79 54.4
Manes.14G060000 Manihot esculenta HOM05D002294 ORTHO05D002367 2.7e-14 82.8 79 57.0
THA.LOC104824989 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 2.7e-14 82.8 57 71.9
A03p05170 Brassica napus HOM05D002294 ORTHO05D002367 4.6e-14 82.0 79 55.7
BraA03t09856Z Brassica rapa HOM05D002294 ORTHO05D002367 4.6e-14 82.0 79 55.7
Nitab4.5_0000069g0090 Nicotiana tabacum HOM05D002294 ORTHO05D002367 4.6e-14 82.0 78 59.0
AT1G24240 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 6.0e-14 81.6 110 46.4
BcaC04g19197 Brassica carinata HOM05D002294 ORTHO05D002367 6.0e-14 81.6 78 56.4
BolC9t59334H Brassica oleracea HOM05D002294 ORTHO05D002367 6.0e-14 81.6 83 54.2
FAN04G2356 Fragaria x ananassa HOM05D002294 ORTHO05D002367 6.0e-14 81.6 78 55.1
ECA232G0941 Erigeron canadensis HOM05D002294 ORTHO05D002367 7.8e-14 81.3 76 55.3
Manes.06G111150 Manihot esculenta HOM05D002294 ORTHO05D002367 7.8e-14 81.3 79 55.7
Aqoxy7G03961 Aquilegia oxysepala HOM05D002294 ORTHO05D002367 1.0e-13 80.9 82 56.1
DCAR_026178 Daucus carota HOM05D002294 ORTHO05D002367 1.7e-13 80.1 83 55.4
FAN13G0475 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.7e-13 80.1 79 53.2
AT4G11630 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 3.0e-13 79.3 68 61.8
BcaNung02655 Brassica carinata HOM05D002294 ORTHO05D002367 3.9e-13 79.0 69 59.4
PGR083G1112 Punica granatum HOM05D002294 ORTHO05D002367 3.9e-13 79.0 79 54.4
QL10p006794 Quercus lobata HOM05D002294 ORTHO05D002367 3.9e-13 79.0 79 55.7
A02p01180 Brassica napus HOM05D002294 ORTHO05D002367 5.1e-13 78.6 69 59.4
A10p25980 Brassica napus HOM05D002294 ORTHO05D002367 5.1e-13 78.6 79 57.0
BraA02t05097Z Brassica rapa HOM05D002294 ORTHO05D002367 5.1e-13 78.6 101 48.5
AL6G22500 Arabidopsis lyrata HOM05D002294 ORTHO05D002367 8.7e-13 77.8 79 54.4
Oeu040866.1 Olea europaea HOM05D002294 ORTHO05D002367 8.7e-13 77.8 68 63.2
BraA10t44660Z Brassica rapa HOM05D002294 ORTHO05D002367 1.1e-12 77.4 88 52.3
ATR0057G012 Amborella trichopoda HOM05D002294 ORTHO05D002367 1.5e-12 77.0 75 53.3
C09p65060 Brassica napus HOM05D002294 ORTHO05D002367 1.5e-12 77.0 78 56.4
unitig_61.g26471 Utricularia gibba HOM05D002294 ORTHO05D002367 2.5e-12 76.3 88 45.5
AT5G11750 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 4.3e-12 75.5 96 47.9
HPP92_022648 Vanilla planifolia HOM05D002294 ORTHO05D002367 4.3e-12 75.5 92 47.8
CDE04G0585 Ceratophyllum demersum HOM05D002294 ORTHO05D002367 9.6e-12 74.3 74 52.7
CDE06G0567 Ceratophyllum demersum HOM05D002294 ORTHO05D002367 9.6e-12 74.3 93 44.1
HPP92_022668 Vanilla planifolia HOM05D002294 ORTHO05D002367 1.2e-11 73.9 92 47.8
Zm00001eb174060 Zea mays HOM05D002294 ORTHO05D002367 4.7e-11 72.0 68 54.4
Gorai.001G064300 Gossypium raimondii HOM05D002294 ORTHO05D002367 6.2e-11 71.6 110 41.8
Zm00001eb260530 Zea mays HOM05D002294 ORTHO05D002367 1.1e-10 70.9 79 50.6
PSO675G6677 Papaver somniferum HOM05D002294 ORTHO05D002367 2.4e-10 69.7 98 42.9
SEGI_18760 Sequoiadendron giganteum HOM05D002294 ORTHO05D002367 3.1e-10 69.3 69 53.6
SEGI_39712 Sequoiadendron giganteum HOM05D002294 ORTHO05D002367 3.1e-10 69.3 69 53.6
SEGI_23439 Sequoiadendron giganteum HOM05D002294 ORTHO05D002367 5.2e-10 68.6 73 50.7
PSO017G4224 Papaver somniferum HOM05D002294 ORTHO05D002367 6.9e-10 68.2 98 42.9
Os02g0205000 Oryza sativa ssp. japonica HOM05D002294 ORTHO05D002367 1.2e-09 67.4 69 50.7
PSO063G0733 Papaver somniferum HOM05D002294 ORTHO05D002367 1.2e-09 67.4 53 64.2
vmacro16648 Vaccinium macrocarpon HOM05D002294 ORTHO05D002367 1.7e-08 63.5 46 69.6
MBI17_g44276_MAGBIO Magnolia biondii HOM05D002294 ORTHO05D002367 4.2e-07 58.9 81 43.2
QL03p071280 Quercus lobata HOM05D002294 ORTHO05D002367 7.1e-07 58.2 139 31.7


User provided reference genes

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