Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 1.5e-89 332.8 162 100.0
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 4.1e-39 165.2 82 100.0
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 7.2e-36 154.5 80 93.8
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 2.8e-32 142.5 87 77.0
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 2.6e-30 136.0 80 86.2
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 4.7e-27 125.2 75 78.7
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 6.1e-27 124.8 75 80.0
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 1.4e-26 123.6 75 77.3
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 4.0e-26 122.1 72 81.9
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 5.2e-26 121.7 92 64.1
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 5.7e-25 118.2 84 66.7
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 9.7e-25 117.5 102 58.8
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 9.7e-25 117.5 72 76.4
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 9.7e-25 117.5 72 76.4
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 1.3e-24 117.1 101 58.4
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 1.3e-24 117.1 101 58.4
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 1.3e-24 117.1 71 74.6
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 1.3e-24 117.1 69 76.8
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 2.8e-24 115.9 72 72.2
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 3.7e-24 115.5 72 70.8
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 3.7e-24 115.5 72 70.8
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 3.7e-24 115.5 72 76.4
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 4.8e-24 115.2 69 72.5
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 8.2e-24 114.4 102 56.9
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 8.2e-24 114.4 67 79.1
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 1.1e-23 114.0 72 75.0
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 1.1e-23 114.0 72 75.0
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 1.1e-23 114.0 72 75.0
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 1.1e-23 114.0 101 57.4
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 1.1e-23 114.0 72 73.6
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 1.8e-23 113.2 72 73.6
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 1.8e-23 113.2 72 73.6
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 1.8e-23 113.2 69 71.0
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 1.8e-23 113.2 72 72.2
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 2.4e-23 112.8 72 73.6
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 2.4e-23 112.8 72 73.6
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 2.4e-23 112.8 72 73.6
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 2.4e-23 112.8 74 71.6
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 3.1e-23 112.5 69 72.5
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 4.1e-23 112.1 72 70.8
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 4.1e-23 112.1 72 73.6
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 7.0e-23 111.3 102 56.9
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 7.0e-23 111.3 72 72.2
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 7.0e-23 111.3 71 69.0
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 7.0e-23 111.3 67 74.6
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 7.0e-23 111.3 75 70.7
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 9.1e-23 110.9 67 76.1
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 9.1e-23 110.9 67 76.1
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 1.6e-22 110.2 69 76.8
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 1.6e-22 110.2 90 60.0
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 2.0e-22 109.8 73 68.5
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 2.0e-22 109.8 67 74.6
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 2.7e-22 109.4 69 76.8
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 2.7e-22 109.4 93 61.3
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 2.7e-22 109.4 67 74.6
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 2.7e-22 109.4 67 74.6
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 2.7e-22 109.4 71 70.4
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 2.7e-22 109.4 71 69.0
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 2.7e-22 109.4 71 69.0
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 3.5e-22 109.0 68 75.0
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 3.5e-22 109.0 72 68.1
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 3.5e-22 109.0 72 70.8
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 5.9e-22 108.2 69 75.4
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 7.7e-22 107.8 68 73.5
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 7.7e-22 107.8 68 73.5
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 7.7e-22 107.8 72 68.1
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 1.0e-21 107.5 67 73.1
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 2.2e-21 106.3 67 71.6
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 6.5e-21 104.8 67 74.6
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 8.5e-21 104.4 67 70.1
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 8.5e-21 104.4 68 69.1
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 1.1e-20 104.0 67 71.6
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 1.9e-20 103.2 69 71.0
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 2.5e-20 102.8 95 57.9
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 3.2e-20 102.4 86 61.6
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 3.2e-20 102.4 67 70.1
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 3.2e-20 102.4 69 66.7
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 3.2e-20 102.4 68 69.1
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 7.2e-20 101.3 67 68.7
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 9.4e-20 100.9 67 70.1
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 1.2e-19 100.5 72 66.7
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 2.1e-19 99.8 73 65.8
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 2.1e-19 99.8 73 65.8
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 2.1e-19 99.8 68 67.6
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 2.1e-19 99.8 67 70.1
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 2.1e-19 99.8 76 63.2
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 2.1e-19 99.8 68 67.6
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.7e-19 99.4 82 56.1
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 2.7e-19 99.4 80 60.0
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 3.6e-19 99.0 67 67.2
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 3.6e-19 99.0 67 67.2
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 4.7e-19 98.6 68 67.6
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.0e-18 97.4 67 65.7
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 1.4e-18 97.1 79 57.0
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 1.4e-18 97.1 88 58.0
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 1.4e-18 97.1 80 57.5
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 1.8e-18 96.7 70 57.1
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 8.8e-18 94.4 92 51.1
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 1.5e-17 93.6 54 77.8
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 2.0e-17 93.2 56 78.6
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 3.4e-17 92.4 59 67.8
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 5.7e-17 91.7 54 75.9
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 2.8e-16 89.4 94 50.0
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 3.7e-16 89.0 55 69.1
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 4.8e-16 88.6 54 70.4
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 1.4e-15 87.0 54 68.5
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 2.0e-14 83.2 124 43.5
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 5.9e-14 81.6 67 58.2
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 5.9e-14 81.6 76 52.6
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 7.7e-14 81.3 55 63.6
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 1.7e-13 80.1 71 50.7
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 2.5e-12 76.3 69 47.8
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 9.5e-12 74.3 56 66.1
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 2.7e-11 72.8 48 68.8
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 6.1e-11 71.6 39 82.1
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 8.8e-10 67.8 45 68.9
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 2.6e-09 66.2 38 73.7
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 3.4e-09 65.9 38 78.9
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 9.8e-09 64.3 37 75.7
Ca_23940_v3 Cicer arietinum L. HOM05D000133 ORTHO05D149088 9.8e-09 64.3 30 90.0
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 1.7e-08 63.5 62 46.8
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 2.8e-08 62.8 56 55.4
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 3.7e-08 62.4 38 71.1
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 6.3e-08 61.6 70 45.7
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 2.4e-07 59.7 72 40.3
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 7.0e-07 58.2 68 39.7


User provided reference genes

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