Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.6e-255 885.6 452 100.0
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 3.0e-225 785.0 453 87.2
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.5e-219 765.4 454 85.0
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 4.2e-219 764.6 453 83.2
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.7e-218 761.1 453 83.9
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.6e-216 755.4 453 83.9
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 3.7e-215 751.5 452 82.7
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 4.1e-214 748.0 452 81.2
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.9e-211 739.2 452 79.4
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 4.7e-210 734.6 480 77.5
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.4e-209 733.0 480 77.3
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.2e-208 729.9 452 80.8
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.7e-188 662.9 447 74.9
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 4.0e-185 651.7 464 69.2
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.9e-183 644.8 447 72.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 6.4e-183 644.4 454 72.0
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 4.1e-182 641.7 454 71.4
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 3.0e-180 635.6 454 70.5
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.2e-178 630.2 450 70.9
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 2.1e-178 629.4 448 70.5
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 2.1e-178 629.4 435 70.1
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.7e-178 628.2 449 69.7
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 6.2e-178 627.9 446 70.9
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.4e-177 626.7 449 71.3
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 4.0e-177 625.2 448 70.1
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 5.2e-177 624.8 446 70.6
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 6.8e-177 624.4 448 69.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.5e-176 623.2 448 70.3
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.5e-176 623.2 446 69.7
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.0e-176 622.9 444 71.4
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.6e-176 622.5 455 69.0
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.6e-176 622.5 449 70.6
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 3.4e-176 622.1 452 68.6
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.3e-175 620.2 448 69.9
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.7e-175 619.8 450 69.3
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.9e-175 618.2 449 69.5
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.1e-174 617.1 460 68.7
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.4e-174 616.7 455 68.4
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 9.2e-174 614.0 450 68.4
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 9.2e-174 614.0 450 68.7
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.2e-173 613.6 457 68.3
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.2e-173 613.6 450 69.1
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.2e-173 613.6 448 69.0
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.6e-173 613.2 449 68.8
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 3.5e-173 612.1 451 68.5
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.5e-173 612.1 450 70.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.6e-173 611.7 450 68.9
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 6.0e-173 611.3 464 65.3
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 7.8e-173 610.9 451 68.5
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 7.8e-173 610.9 449 68.2
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.3e-172 610.1 451 68.5
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-172 610.1 451 68.5
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-172 609.8 451 68.3
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.7e-172 609.8 451 67.8
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 3.0e-172 609.0 395 75.4
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 5.1e-172 608.2 448 67.4
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 5.1e-172 608.2 451 68.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 8.7e-172 607.4 465 66.2
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.5e-171 606.7 451 67.4
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.9e-171 606.3 450 68.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.9e-171 606.3 451 68.1
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.5e-171 605.9 452 66.6
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 3.3e-171 605.5 451 67.6
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 4.3e-171 605.1 451 68.1
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 5.6e-171 604.7 456 66.2
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 5.6e-171 604.7 456 66.2
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 5.6e-171 604.7 450 68.2
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 7.3e-171 604.4 448 68.5
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 9.6e-171 604.0 447 68.2
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.6e-170 603.2 447 68.2
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.1e-170 602.8 449 68.6
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.1e-170 602.8 458 66.8
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 2.8e-170 602.4 451 67.8
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 4.7e-170 601.7 448 67.9
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 6.2e-170 601.3 399 73.7
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-169 599.7 447 68.2
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.8e-169 599.7 451 68.1
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.8e-169 599.7 447 68.2
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 6.9e-169 597.8 450 67.8
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.2e-168 597.0 452 68.4
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.0e-168 596.3 468 65.6
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.3e-167 593.6 440 68.2
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.3e-167 593.6 417 70.7
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 2.9e-167 592.4 476 64.7
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.4e-166 590.1 452 67.5
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.4e-166 590.1 448 66.3
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 4.2e-166 588.6 458 65.9
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 5.4e-166 588.2 436 68.6
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.2e-165 587.0 472 64.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 2.1e-165 586.3 489 62.6
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 3.5e-165 585.5 453 66.4
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 6.0e-165 584.7 453 66.4
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.3e-164 583.6 442 65.2
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.6e-162 576.6 446 66.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 6.2e-162 574.7 445 66.3
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.1e-161 573.9 470 64.9
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.3e-161 571.6 451 65.0
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.2e-160 570.5 418 70.8
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.9e-159 565.8 551 54.4
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 4.2e-158 562.0 443 64.3
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.1e-157 559.7 470 62.1
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 6.0e-157 558.1 399 68.9
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.8e-156 556.6 442 64.9
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 9.6e-155 550.8 457 60.4
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 2.4e-153 546.2 407 68.8
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.3e-148 529.6 444 61.9
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 4.3e-147 525.4 391 66.5
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 9.6e-147 524.2 446 59.6
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.1e-145 520.8 471 58.8
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 4.0e-145 518.8 480 58.3
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 3.4e-144 515.8 443 58.7
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.2e-142 508.8 403 63.5
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 6.9e-137 491.5 406 61.6
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 2.2e-135 486.5 446 56.5
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 2.7e-133 479.6 451 55.2
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 5.1e-132 475.3 446 53.6
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.4e-129 467.2 448 55.8
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.3e-129 465.3 348 68.1
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.4e-126 457.2 442 53.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.3e-122 444.1 460 54.3
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 5.3e-121 438.7 285 75.1
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 9.1e-121 438.0 427 51.5
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.3e-119 434.1 389 56.8
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 6.5e-119 431.8 454 49.3
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.8e-116 423.7 437 56.1
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.9e-116 422.5 455 48.1
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 5.2e-116 422.2 455 48.1
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 4.5e-112 409.1 435 48.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.0e-108 397.9 319 66.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.0e-100 369.4 444 45.5
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.6e-96 357.5 252 67.5
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.1e-93 345.5 261 66.3
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.4e-91 339.3 290 61.0
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.3e-90 337.8 396 47.5
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.7e-80 303.5 454 39.9
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 2.5e-70 270.4 194 68.6
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.0e-67 260.8 310 50.6
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 5.1e-63 246.1 451 37.0
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.1e-55 219.5 158 69.0
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.5e-54 218.0 125 84.8
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.1e-53 214.2 129 77.5
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 5.8e-51 206.1 173 63.0
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.1e-46 191.8 151 61.6
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.2e-42 177.6 197 50.8
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 7.1e-41 172.6 121 70.2
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.5e-30 138.3 132 56.8
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.6e-29 134.8 94 69.1
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.9e-26 123.2 118 56.8
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 9.3e-25 119.0 72 73.6
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 3.0e-23 114.0 117 53.8
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 5.0e-18 96.7 99 46.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.7e-16 90.9 72 63.9
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.0e-14 84.7 59 69.5
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 3.3e-14 84.0 44 84.1
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 4.3e-14 83.6 63 63.5
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 1.7e-10 71.6 77 53.2
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.1e-08 64.7 42 71.4


User provided reference genes

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