Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 3.2e-209 731.5 361 100.0
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.0e-151 540.4 325 83.4
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.6e-142 509.2 284 87.0
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 4.4e-142 508.4 326 77.3
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 4.8e-141 505.0 347 74.4
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 4.1e-140 501.9 359 71.6
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 5.0e-138 495.0 348 73.6
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 2.7e-131 472.6 296 81.8
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 8.5e-130 467.6 322 73.3
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 2.5e-129 466.1 315 73.0
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 2.7e-128 462.6 322 72.7
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 8.3e-125 451.1 440 56.1
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 5.9e-123 444.9 315 68.6
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 3.4e-118 429.1 275 73.8
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.2e-115 420.6 318 67.3
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 5.9e-115 418.3 300 67.7
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.0e-114 417.5 355 61.1
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 3.3e-113 412.5 338 62.1
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 5.6e-113 411.8 273 71.1
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 5.6e-113 411.8 295 67.1
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 7.3e-113 411.4 341 59.5
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.2e-112 410.6 303 66.7
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.6e-112 410.2 302 66.2
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.6e-112 410.2 309 66.7
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.8e-112 409.5 312 65.4
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 2.8e-112 409.5 302 66.2
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 8.0e-112 407.9 265 75.1
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.0e-111 407.5 265 73.2
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.0e-111 407.5 274 71.2
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 3.1e-111 406.0 313 64.2
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 5.2e-111 405.2 285 67.7
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 8.9e-111 404.4 308 63.6
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 2.0e-110 403.3 326 62.0
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.6e-110 402.9 323 63.2
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 3.4e-110 402.5 320 63.4
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 1.3e-109 400.6 369 58.3
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.7e-109 400.2 270 70.0
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 3.7e-109 399.1 299 65.2
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 4.9e-109 398.7 265 70.2
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 4.9e-109 398.7 282 68.4
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 8.3e-109 397.9 341 60.7
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 8.3e-109 397.9 268 69.0
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 1.1e-108 397.5 269 70.3
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 4.1e-108 395.6 280 69.3
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 7.0e-108 394.8 348 59.5
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 7.0e-108 394.8 261 70.1
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 7.0e-108 394.8 270 70.7
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 9.2e-108 394.4 307 60.9
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 9.2e-108 394.4 321 62.0
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.0e-107 393.3 270 68.5
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.5e-107 392.5 259 71.8
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 6.0e-107 391.7 280 67.5
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 7.8e-107 391.3 327 60.2
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 7.8e-107 391.3 268 70.1
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.0e-106 391.0 292 65.4
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.0e-106 391.0 274 66.8
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.3e-106 389.8 299 66.9
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 3.0e-106 389.4 297 62.6
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.9e-106 389.0 299 66.6
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 8.6e-106 387.9 266 66.9
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 8.6e-106 387.9 263 68.8
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.1e-105 387.5 334 58.7
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 4.3e-105 385.6 299 66.6
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 5.6e-105 385.2 282 64.9
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 5.6e-105 385.2 296 62.8
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 1.6e-104 383.6 342 58.2
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 6.2e-104 381.7 263 67.3
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 8.1e-104 381.3 302 61.6
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 1.1e-103 380.9 260 66.2
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 2.3e-103 379.8 259 68.0
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 2.3e-103 379.8 277 65.3
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 2.0e-102 376.7 277 64.3
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 3.4e-102 375.9 242 74.4
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 5.8e-102 375.2 273 65.6
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 5.8e-102 375.2 265 67.9
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 5.8e-102 375.2 303 60.7
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 7.5e-102 374.8 332 57.5
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.7e-101 373.6 267 64.8
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 2.2e-101 373.2 306 58.8
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 6.4e-101 371.7 325 55.4
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 6.4e-101 371.7 343 53.4
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 6.4e-101 371.7 266 67.7
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 8.3e-101 371.3 337 55.2
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.9e-100 370.2 268 66.0
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 4.1e-100 369.0 277 61.7
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 5.4e-100 368.6 261 66.3
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.6e-99 367.1 279 60.9
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 1.6e-99 367.1 210 80.0
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 2.1e-99 366.7 274 63.9
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 2.7e-99 366.3 270 62.2
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 6.0e-99 365.2 259 64.1
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 7.8e-99 364.8 270 61.9
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 7.8e-99 364.8 265 64.5
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 1.0e-98 364.4 247 70.9
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 3.0e-98 362.8 234 69.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 3.9e-98 362.5 265 64.2
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 3.9e-98 362.5 387 51.7
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 5.1e-98 362.1 251 70.9
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 3.6e-96 355.9 332 52.7
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.1e-95 354.4 321 60.1
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 9.9e-94 347.8 270 62.6
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 3.5e-91 339.3 210 74.8
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.0e-90 337.8 266 59.8
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 8.6e-90 334.7 266 59.8
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.5e-89 333.2 266 59.0
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 3.1e-87 326.2 297 59.9
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.7e-85 320.5 298 55.0
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 4.6e-83 312.4 228 66.7
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.2e-78 297.7 190 70.0
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 1.2e-78 297.7 233 60.5
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 3.3e-73 279.6 312 47.8
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 3.6e-72 276.2 256 51.6
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 2.7e-67 260.0 208 57.7
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 3.0e-66 256.5 233 53.6
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.1e-63 248.1 232 52.2
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.3e-53 214.5 214 50.9
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.7e-53 214.2 204 54.4
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 3.2e-52 209.9 245 46.1
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 1.8e-47 194.1 119 74.8
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 6.9e-47 192.2 119 75.6
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 3.8e-37 159.8 160 50.6
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 2.0e-25 120.9 72 84.7
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.0e-25 120.9 83 67.5
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 6.1e-19 99.4 68 69.1
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.0e-17 94.4 61 68.9
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.0e-17 94.4 61 68.9
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.6e-17 94.0 160 37.5
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 2.4e-15 87.4 147 35.4
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 2.4e-15 87.4 114 47.4
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 2.3e-13 80.9 221 29.4
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 3.8e-13 80.1 190 31.6
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 5.0e-13 79.7 131 35.1
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 5.0e-13 79.7 213 29.1
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 1.9e-12 77.8 133 35.3
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.5e-12 77.4 131 35.9
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 2.5e-12 77.4 140 33.6
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.5e-12 77.4 184 31.0
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 3.2e-12 77.0 131 35.1
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 4.2e-12 76.6 131 32.8
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 4.2e-12 76.6 208 26.9
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 4.2e-12 76.6 119 36.1
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 4.2e-12 76.6 131 34.4
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 5.5e-12 76.3 137 33.6
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 7.2e-12 75.9 145 33.1
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 7.2e-12 75.9 145 33.1
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 7.2e-12 75.9 119 34.5
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 7.2e-12 75.9 131 34.4
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 7.2e-12 75.9 119 36.1
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 7.2e-12 75.9 116 36.2
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.6e-11 74.7 147 31.3
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.1e-11 74.3 131 32.8
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 2.1e-11 74.3 116 33.6
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 2.1e-11 74.3 131 33.6
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.8e-11 73.9 184 30.4
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 2.8e-11 73.9 184 31.0
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 4.7e-11 73.2 119 33.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 4.7e-11 73.2 152 29.6
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 8.0e-11 72.4 150 30.7
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 8.0e-11 72.4 150 30.7
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 8.0e-11 72.4 137 30.7
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 1.4e-10 71.6 115 31.3
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.8e-10 71.2 116 33.6
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 4.0e-10 70.1 126 31.7
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.0e-10 70.1 60 55.0
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 4.0e-10 70.1 142 32.4
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 4.0e-10 70.1 119 34.5
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 6.8e-10 69.3 125 33.6
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.0e-09 67.8 126 31.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 5.7e-09 66.2 184 29.9
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 5.7e-09 66.2 121 31.4
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.2e-08 64.3 122 31.1
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 2.2e-08 64.3 90 37.8
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 4.9e-08 63.2 107 30.8
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 1.1e-07 62.0 202 26.2
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 3.1e-07 60.5 127 30.7
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 9.2e-07 58.9 118 31.4
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 9.2e-07 58.9 92 32.6
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.6e-06 58.2 129 31.8
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.8e-06 55.8 162 25.9


User provided reference genes

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