Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 6.9e-304 1046.6 558 100.0
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 2.3e-259 898.7 552 87.3
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 3.5e-255 884.8 552 85.1
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 1.0e-235 820.1 558 81.2
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 5.8e-234 814.3 560 78.6
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 4.6e-231 804.7 561 78.4
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 7.8e-231 803.9 560 77.3
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 5.2e-227 791.2 569 75.7
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 6.8e-227 790.8 562 76.7
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 2.6e-226 788.9 571 75.5
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 4.7e-220 768.1 562 75.8
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 3.6e-212 741.9 573 71.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 4.5e-194 681.8 556 66.5
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.4e-192 676.8 562 66.0
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.6e-188 663.3 554 65.7
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 2.8e-188 662.5 556 65.5
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.8e-187 659.8 565 63.7
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 3.4e-186 655.6 562 64.8
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 5.8e-186 654.8 568 64.4
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 1.3e-185 653.7 567 65.1
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.2e-185 652.9 568 63.7
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 5.5e-184 648.3 549 63.8
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 7.1e-184 647.9 550 64.2
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 4.6e-183 645.2 558 65.2
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 4.6e-183 645.2 558 63.4
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 1.0e-182 644.0 553 64.0
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.0e-182 644.0 557 63.2
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 2.3e-182 642.9 570 63.3
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 3.9e-182 642.1 572 62.4
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.9e-182 642.1 561 60.6
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 5.7e-181 638.3 575 60.5
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 5.7e-181 638.3 560 61.6
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 9.6e-181 637.5 564 62.4
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.4e-179 632.9 554 62.6
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 3.1e-179 632.5 569 61.0
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 2.0e-178 629.8 552 61.6
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 3.4e-178 629.0 558 62.7
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 1.0e-177 627.5 576 60.6
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.7e-177 626.7 565 59.5
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 1.9e-176 623.2 562 61.6
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 5.5e-176 621.7 564 60.3
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 7.9e-175 617.8 561 60.1
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 7.9e-175 617.8 557 62.3
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.3e-174 616.3 558 60.9
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.0e-174 615.9 577 57.5
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 6.7e-174 614.8 557 60.7
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.7e-174 614.4 561 58.5
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.9e-173 613.2 580 58.4
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 3.3e-173 612.5 559 60.3
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 9.7e-173 610.9 546 61.5
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-172 610.5 581 57.5
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 3.7e-172 609.0 550 60.9
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.7e-172 609.0 563 59.7
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 3.1e-171 605.9 566 59.2
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.1e-171 605.5 581 57.0
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 5.3e-171 605.1 559 59.4
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 5.3e-171 605.1 560 60.2
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.2e-170 604.0 572 58.4
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.5e-170 603.6 574 58.9
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 2.0e-170 603.2 551 59.5
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 2.0e-170 603.2 575 59.0
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.3e-169 600.5 571 59.0
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 1.4e-168 597.0 571 58.3
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.5e-168 596.3 556 59.5
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 1.6e-167 593.6 551 60.3
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.6e-167 592.4 568 57.9
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 7.9e-167 591.3 559 58.7
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.5e-165 587.0 569 58.9
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.7e-164 583.6 555 57.8
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 4.8e-164 582.0 574 57.3
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 6.3e-164 581.6 559 57.8
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.4e-163 580.5 550 59.3
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.4e-163 579.7 565 57.5
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 2.4e-163 579.7 673 51.6
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 9.1e-163 577.8 565 57.3
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 1.2e-162 577.4 587 59.1
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 7.7e-162 574.7 549 56.5
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 2.2e-161 573.2 572 55.4
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 5.0e-161 572.0 564 57.4
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 2.7e-159 566.2 564 58.0
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 4.7e-159 565.5 565 57.0
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 7.9e-159 564.7 576 53.0
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 1.8e-158 563.5 571 54.6
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 6.7e-158 561.6 549 59.0
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 4.4e-157 558.9 558 54.8
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 1.7e-156 557.0 557 54.0
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 4.8e-156 555.4 557 53.9
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 1.8e-155 553.5 561 53.7
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 2.4e-155 553.1 573 52.9
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 4.1e-155 552.4 570 53.0
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 3.5e-154 549.3 577 52.0
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.7e-153 547.0 552 53.6
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 2.9e-153 546.2 573 52.5
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.9e-152 543.5 560 57.7
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 3.3e-149 532.7 586 53.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 4.4e-149 532.3 549 54.6
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 5.7e-149 531.9 574 50.5
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 5.7e-149 531.9 577 54.1
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 2.5e-144 516.5 567 52.6
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 8.3e-140 501.5 418 65.8
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 2.7e-135 486.5 545 52.1
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.1e-135 485.3 417 62.4
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 3.0e-134 483.0 557 53.3
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.0e-129 468.0 449 58.1
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.3e-129 466.8 433 58.7
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.2e-127 461.1 552 50.4
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 1.2e-125 454.5 552 48.2
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.4e-123 447.6 501 52.9
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.3e-120 435.3 531 49.9
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.2e-117 427.9 364 63.7
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 2.6e-117 426.8 558 46.2
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.7e-114 416.8 300 71.0
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 2.6e-109 400.2 281 72.6
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 9.8e-109 398.3 555 42.9
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 2.9e-108 396.7 553 44.1
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 2.4e-107 393.7 558 43.5
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 5.4e-107 392.5 556 47.1
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 6.2e-103 379.0 557 42.0
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 8.9e-102 375.2 589 44.8
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 3.4e-101 373.2 384 52.3
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-88 330.9 465 44.9
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.2e-74 285.0 343 51.3
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 4.3e-72 276.6 310 52.3
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 5.7e-64 249.6 190 66.8
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 2.6e-61 240.7 493 36.7
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.8e-60 236.9 231 55.0
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 7.2e-59 232.6 410 37.8
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.9e-57 226.9 157 70.7
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.4e-49 201.8 175 61.1
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.7e-45 186.0 140 69.3
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-43 179.1 322 40.1
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-42 177.6 138 65.9
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-41 175.3 139 66.9
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.6e-37 161.0 118 69.5
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 2.9e-36 157.5 118 67.8
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.7e-29 134.4 135 53.3
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-26 124.4 285 33.0
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-23 115.2 84 69.0
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 7.7e-21 106.3 85 64.7
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-20 105.9 173 40.5
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 7.5e-16 89.7 188 40.4
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 4.1e-14 84.0 67 62.7
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 7.0e-14 83.2 56 66.1
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-12 78.6 168 36.3
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-11 75.5 42 81.0
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 2.8e-10 71.2 48 75.0
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-09 69.3 167 32.3
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 2.3e-09 68.2 168 33.9
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.7e-07 62.0 46 63.0
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 6.4e-07 60.1 157 30.6
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 8.3e-07 59.7 44 59.1
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 1.1e-06 59.3 43 65.1
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-06 59.3 52 59.6
arahy.Tifrunner.gnm1.ann1.770ATG Arachis hypogaea HOM05D004469 ORTHO05D005429 2.4e-06 58.2 44 65.9
arahy.Tifrunner.gnm1.ann1.RZAJ21 Arachis hypogaea HOM05D004469 ORTHO05D005429 4.1e-06 57.4 41 73.2
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 5.4e-06 57.0 185 35.1


User provided reference genes

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