Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 0.0e+00 1172.9 568 100.0
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 0.0e+00 1117.1 568 93.8
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 0.0e+00 1116.3 568 93.7
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 0.0e+00 1115.5 568 93.8
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 0.0e+00 1095.5 568 91.4
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 0.0e+00 1094.3 568 91.9
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 0.0e+00 1090.1 568 91.0
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 0.0e+00 1090.1 568 91.5
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 0.0e+00 1084.3 568 90.7
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 0.0e+00 1083.2 568 91.4
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 0.0e+00 1083.2 565 90.3
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 0.0e+00 1076.2 568 89.8
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 3.9e-312 1074.7 568 89.6
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 1.9e-311 1071.6 568 89.8
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 5.8e-311 1070.1 568 89.4
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.1e-309 1065.8 568 89.4
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.6e-308 1060.8 568 89.1
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.6e-308 1060.8 568 88.7
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 4.7e-308 1060.4 568 88.7
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 4.0e-307 1057.4 568 88.9
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 1.5e-306 1055.4 568 88.0
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.5e-306 1055.4 571 88.8
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 2.0e-306 1055.0 568 88.2
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.4e-306 1054.3 561 89.3
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 561 89.3
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 9.8e-306 1052.7 564 88.1
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 3.1e-304 1047.7 568 87.1
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 4.1e-304 1047.3 563 88.6
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 5.4e-304 1047.0 561 88.9
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 5.4e-304 1047.0 563 88.6
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.3e-302 1042.3 567 86.8
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.8e-302 1040.8 563 87.9
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 3.8e-302 1040.8 557 88.9
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 6.6e-302 1040.0 566 88.2
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 567 88.0
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 4.3e-301 1037.3 568 87.7
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.6e-301 1036.9 563 88.1
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 567 87.8
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 4.7e-300 1033.9 563 87.6
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 8.0e-300 1033.1 568 87.5
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.0e-299 1032.7 567 86.6
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.0e-299 1032.7 568 86.8
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 3.0e-299 1031.2 568 87.5
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 5.2e-299 1030.4 561 88.1
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.8e-299 1030.0 563 87.6
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 8.9e-299 1029.6 563 88.1
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 563 87.6
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.0e-298 1028.5 567 86.6
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 563 87.4
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 568 86.3
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 567 86.2
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 565 86.0
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.9e-297 1024.6 561 86.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 4.9e-297 1023.8 568 85.9
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 4.9e-297 1023.8 568 85.9
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 568 85.6
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 9.2e-296 1019.6 562 86.1
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 563 86.1
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 563 86.1
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.7e-295 1018.1 565 86.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 3.5e-295 1017.7 561 86.3
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 3.9e-294 1014.2 563 86.5
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.6e-294 1013.4 568 84.0
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 565 86.0
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.9e-293 1011.9 568 84.0
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 4.3e-293 1010.7 568 85.2
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.8e-292 1008.1 565 83.5
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 2.8e-292 1008.1 564 85.3
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 6.2e-292 1006.9 564 86.0
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 565 85.3
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 3.1e-291 1004.6 568 84.0
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.4e-290 1001.1 565 82.8
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 7.5e-290 1000.0 556 85.4
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.7e-289 998.8 550 85.6
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.9e-289 998.0 557 85.3
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.4e-288 995.0 565 83.5
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 4.1e-288 994.2 563 84.9
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.2e-287 992.6 571 83.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.0e-287 991.9 552 84.4
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 4.6e-287 990.7 569 83.3
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.6e-284 982.2 561 83.4
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.1e-284 981.9 551 84.4
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 83.2
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.0e-283 977.6 549 84.2
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 8.9e-283 976.5 550 84.2
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 83.0
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.5e-282 975.7 564 83.2
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 83.0
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 83.0
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 83.0
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 82.6
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 4.4e-282 974.2 570 82.5
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 5.8e-282 973.8 564 82.6
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 7.5e-282 973.4 549 83.8
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.9e-282 973.0 568 82.6
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.7e-281 972.2 564 82.8
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 8.3e-281 969.9 564 82.4
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.1e-280 969.5 564 82.3
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-280 968.8 564 82.8
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-280 968.8 564 82.1
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.9e-280 968.8 564 82.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.9e-280 968.8 564 82.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.9e-280 968.8 567 82.2
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-280 968.4 564 82.8
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 3.2e-280 968.0 564 82.1
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 7.1e-280 966.8 534 85.2
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.1e-279 965.3 564 81.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 3.5e-279 964.5 564 81.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.9e-277 958.7 564 81.0
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 5.6e-277 957.2 562 82.7
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 9.5e-277 956.4 564 81.2
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 4.7e-276 954.1 564 80.0
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 4.0e-275 951.0 564 80.7
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 8.9e-275 949.9 564 80.3
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 8.9e-275 949.9 562 82.0
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.5e-274 949.1 564 79.3
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.7e-271 938.3 568 77.8
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-268 929.1 564 77.8
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 2.1e-268 928.7 568 77.1
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-266 922.9 563 80.6
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.8e-266 920.6 564 77.3
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 7.3e-261 903.7 570 75.6
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 7.3e-261 903.7 565 75.6
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.3e-260 902.9 564 78.2
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.3e-260 902.9 571 74.8
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-260 902.5 524 82.6
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 5.3e-259 897.5 571 73.9
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 6.9e-259 897.1 568 74.3
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 7.6e-258 893.6 565 74.2
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 7.6e-258 893.6 570 75.1
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 4.2e-256 887.9 565 74.9
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.8e-254 882.5 574 72.8
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.1e-247 859.0 557 77.2
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 3.0e-246 855.1 562 73.3
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.5e-245 852.0 566 73.1
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.1e-243 846.7 564 71.8
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 2.6e-242 842.0 569 72.2
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 2.5e-240 835.5 568 71.8
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.9e-232 809.3 469 80.6
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.7e-231 805.4 418 91.4
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.7e-212 741.9 563 66.4
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.4e-211 740.0 567 66.1
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 9.7e-205 717.2 425 79.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.1e-183 646.4 373 80.2
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 8.0e-175 617.8 535 54.8
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.0e-169 599.4 417 72.4
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.4e-164 581.6 488 54.9
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.2e-162 577.4 329 80.5
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 6.6e-161 571.6 523 51.6
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 1.3e-156 557.4 292 86.6
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 8.1e-143 511.5 418 57.2
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-136 491.1 567 49.0
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.4e-134 484.2 568 48.8
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 6.0e-130 468.8 319 72.1
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.4e-123 447.6 468 53.2
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.8e-87 326.2 213 74.6
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 1.7e-84 317.8 548 38.5
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.6e-77 294.7 497 34.0
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-65 254.6 153 75.8
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 2.0e-64 251.1 153 74.5
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 3.9e-60 236.9 166 66.9
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.8e-49 201.4 133 75.9
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.5e-48 198.4 132 74.2
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 9.9e-48 195.7 128 77.3
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 3.9e-44 183.7 166 62.0
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.5e-43 181.8 166 62.0
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.5e-43 181.0 166 62.0
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 2.8e-42 177.6 166 61.4
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 2.8e-42 177.6 128 67.2
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.1e-38 165.6 321 32.1
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 4.0e-33 147.1 493 26.4
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.9e-30 138.3 87 71.3
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.6e-29 133.7 95 67.4
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-26 125.6 213 38.5
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.2e-24 119.0 76 65.8
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 3.4e-24 117.5 85 61.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-20 105.5 166 42.8
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 3.9e-20 104.0 184 39.1
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 6.2e-18 96.7 59 67.8
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 3.7e-10 70.9 46 63.0
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 5.0e-07 60.5 73 54.8
GSVIVG01028599001 Vitis vinifera HOM05D000597 ORTHO05D000603 5.0e-07 60.5 336 22.3
GSVIVG01006081001 Vitis vinifera HOM05D000597 ORTHO05D000603 2.5e-06 58.2 336 22.9
GSVIVG01006150001 Vitis vinifera HOM05D000597 ORTHO05D000603 3.2e-06 57.8 336 22.6
GSVIVG01028610001 Vitis vinifera HOM05D000597 ORTHO05D000603 3.2e-06 57.8 336 22.6


User provided reference genes

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