Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 4.7e-123 444.5 220 100.0
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 3.1e-106 388.7 223 87.0
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 4.6e-102 374.8 219 84.9
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 7.1e-95 350.9 223 79.8
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 3.6e-91 338.6 227 77.1
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 6.2e-91 337.8 223 77.6
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 1.4e-90 336.7 222 78.4
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 2.4e-90 335.9 229 74.2
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 4.0e-90 335.1 223 77.1
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 1.8e-85 319.7 221 74.7
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 5.1e-85 318.2 217 74.7
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 1.9e-84 316.2 227 70.9
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 5.8e-81 304.7 204 72.5
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.0e-80 303.9 221 69.2
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 3.8e-80 302.0 226 68.1
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.5e-80 301.2 207 69.1
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 4.2e-79 298.5 226 65.5
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.2e-79 298.5 207 68.6
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 5.5e-79 298.1 187 74.9
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.5e-79 298.1 207 68.6
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 5.5e-79 298.1 192 73.4
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 5.5e-79 298.1 212 68.9
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 5.5e-79 298.1 226 65.5
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 1.6e-78 296.6 220 65.0
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 2.1e-78 296.2 188 73.9
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 2.1e-78 296.2 203 70.9
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 4.6e-78 295.0 212 67.9
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 6.0e-78 294.7 225 67.6
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.0e-77 293.9 226 66.8
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.0e-77 293.9 220 64.1
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 1.3e-77 293.5 192 72.9
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.3e-77 293.5 207 68.6
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.3e-77 293.5 183 74.3
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 2.3e-77 292.7 197 74.1
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 5.1e-77 291.6 208 68.3
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 1.1e-76 290.4 222 65.8
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.9e-76 289.7 226 64.6
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 2.5e-76 289.3 225 64.4
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 3.3e-76 288.9 210 66.7
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 3.3e-76 288.9 187 71.1
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 7.4e-76 287.7 179 77.1
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 9.6e-76 287.3 220 61.8
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.3e-75 287.0 208 66.3
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 1.6e-75 286.6 213 68.5
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 2.8e-75 285.8 225 65.8
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.8e-75 285.0 219 63.9
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 8.2e-75 284.3 191 69.6
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.4e-74 283.5 227 62.6
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 2.4e-74 282.7 208 68.8
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 4.1e-74 282.0 200 66.5
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 9.0e-74 280.8 207 65.2
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 9.0e-74 280.8 215 66.0
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 9.0e-74 280.8 200 68.0
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 1.5e-73 280.0 176 73.3
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 2.6e-73 279.3 224 65.2
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 2.6e-73 279.3 200 67.5
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 7.6e-73 277.7 219 62.1
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.0e-72 277.3 223 66.8
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.0e-72 277.3 219 63.0
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.7e-72 276.6 222 66.2
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 2.2e-72 276.2 222 66.7
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.2e-72 276.2 205 67.3
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 2.2e-72 276.2 176 73.9
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 5.0e-72 275.0 227 58.6
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 5.0e-72 275.0 222 65.8
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 6.5e-72 274.6 188 69.7
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 8.5e-72 274.2 222 65.8
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 1.1e-71 273.9 173 74.6
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 1.4e-71 273.5 204 64.2
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 3.2e-71 272.3 172 72.1
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 4.2e-71 271.9 209 66.0
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 4.2e-71 271.9 155 82.6
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 7.2e-71 271.2 218 66.1
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 9.3e-71 270.8 175 74.3
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.7e-70 269.2 221 63.3
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 3.6e-70 268.9 222 64.0
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 6.1e-70 268.1 224 63.4
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 7.9e-70 267.7 181 72.4
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.8e-69 266.5 221 62.9
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 3.0e-69 265.8 174 72.4
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 5.1e-69 265.0 165 72.7
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 5.1e-69 265.0 165 72.7
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 3.3e-68 262.3 222 64.0
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 5.7e-68 261.5 215 57.7
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 7.4e-68 261.2 226 64.6
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 9.7e-68 260.8 221 61.1
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.1e-66 257.3 151 77.5
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.4e-66 256.1 220 58.6
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 2.4e-66 256.1 178 65.7
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 4.1e-66 255.4 170 70.0
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 5.9e-65 251.5 252 58.7
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 7.7e-65 251.1 178 65.2
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.0e-64 250.8 220 59.1
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.7e-64 250.0 158 72.2
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 5.0e-64 248.4 155 73.5
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.6e-62 243.4 152 71.7
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.5e-60 236.9 172 63.4
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 9.7e-60 234.2 169 64.5
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 5.3e-58 228.4 224 55.4
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.5e-57 226.9 181 59.1
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 3.4e-57 225.7 228 55.3
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 2.9e-56 222.6 172 65.1
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 6.5e-56 221.5 170 65.9
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.8e-53 213.4 151 63.6
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 1.8e-50 203.4 227 50.7
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.1e-47 194.1 211 51.2
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 9.4e-47 191.0 219 50.7
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 3.6e-46 189.1 155 63.9
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.0e-45 187.6 166 59.6
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 3.0e-45 186.0 180 48.3
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.2e-44 184.1 99 87.9
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 7.5e-44 181.4 110 72.7
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.2e-41 174.1 127 68.5
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.0e-41 173.3 113 70.8
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 7.7e-41 171.4 110 66.4
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.1e-38 163.3 95 78.9
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 5.4e-34 148.7 95 74.7
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 1.1e-31 141.0 138 54.3
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.1e-31 141.0 76 81.6
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.2e-28 131.0 159 44.0
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.3e-27 127.5 114 62.3
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.8e-26 123.6 83 65.1
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 5.4e-26 122.1 143 49.0
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 7.3e-23 111.7 83 62.7
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 3.6e-22 109.4 81 63.0
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.0e-21 107.8 83 61.4
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 1.0e-21 107.8 104 55.8
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 4.9e-19 99.0 55 80.0
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 1.3e-16 90.9 62 71.0
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 1.4e-13 80.9 97 46.4
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 1.8e-13 80.5 59 66.1


User provided reference genes

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