Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 3.4e-134 481.9 284 100.0
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 6.6e-101 371.3 293 81.9
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 8.3e-88 327.8 313 66.8
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 2.1e-70 270.0 247 69.2
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 8.6e-69 264.6 302 62.3
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 5.2e-66 255.4 287 63.1
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 3.8e-64 249.2 297 55.9
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 3.2e-63 246.1 334 53.0
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.7e-53 213.8 236 58.9
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 5.3e-50 202.2 233 57.9
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 7.4e-44 181.8 261 46.0
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 4.8e-43 179.1 229 50.7
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 4.5e-41 172.6 258 51.6
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 4.5e-41 172.6 258 51.6
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.4e-39 167.5 257 50.2
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 1.9e-39 167.2 265 42.6
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 3.2e-39 166.4 242 47.9
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.2e-39 166.0 252 44.0
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.6e-38 164.1 245 48.2
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 3.5e-38 162.9 248 46.8
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 4.6e-38 162.5 252 43.3
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 2.3e-37 160.2 169 58.0
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 2.3e-37 160.2 275 42.9
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 1.9e-36 157.1 255 45.1
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.5e-36 156.8 263 41.4
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 3.3e-36 156.4 255 45.9
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 4.3e-36 156.0 252 43.3
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.3e-35 154.5 250 43.2
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 6.3e-35 152.1 318 36.8
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 1.1e-34 151.4 260 45.8
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.8e-34 150.6 263 41.8
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.8e-34 150.6 238 43.7
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 1.8e-34 150.6 251 42.2
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 5.3e-34 149.1 264 44.7
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 5.3e-34 149.1 233 42.9
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 9.0e-34 148.3 243 44.9
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 1.2e-33 147.9 251 42.2
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 2.6e-33 146.7 244 43.0
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.6e-33 146.7 254 41.7
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 5.9e-33 145.6 244 42.2
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 5.9e-33 145.6 258 40.3
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 7.6e-33 145.2 259 44.8
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.0e-32 144.8 239 44.4
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.0e-32 144.8 253 40.7
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.3e-32 144.4 244 41.8
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.3e-32 144.4 245 42.9
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.3e-32 144.4 249 41.0
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.3e-32 144.4 258 44.6
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.3e-32 144.4 257 42.0
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.7e-32 144.1 245 42.9
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.9e-32 143.3 175 49.7
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.9e-32 143.3 289 38.1
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 6.5e-32 142.1 244 44.3
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 6.5e-32 142.1 289 39.1
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 8.5e-32 141.7 254 43.3
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.1e-31 141.4 248 43.1
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.1e-31 141.4 243 43.2
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 1.1e-31 141.4 255 40.4
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.9e-31 140.6 145 55.2
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 1.9e-31 140.6 267 39.7
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 2.5e-31 140.2 254 40.9
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 2.5e-31 140.2 142 59.2
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 2.5e-31 140.2 294 37.4
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 4.2e-31 139.4 267 39.7
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 9.3e-31 138.3 248 42.3
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.2e-30 137.9 258 44.6
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 2.7e-30 136.7 312 38.8
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 2.7e-30 136.7 168 50.0
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 4.6e-30 136.0 254 42.5
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 6.1e-30 135.6 188 46.8
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 6.1e-30 135.6 233 41.2
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 7.9e-30 135.2 241 41.9
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.0e-29 134.8 256 42.6
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.8e-29 134.0 236 43.2
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 3.9e-29 132.9 147 57.1
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 8.7e-29 131.7 327 33.9
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 1.5e-28 131.0 278 39.2
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 7.4e-28 128.6 266 39.8
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 7.4e-28 128.6 174 51.1
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 7.4e-28 128.6 162 47.5
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 9.7e-28 128.3 162 49.4
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 2.2e-27 127.1 233 41.2
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 2.8e-27 126.7 151 57.0
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 2.8e-27 126.7 254 38.6
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 3.7e-27 126.3 241 43.6
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 4.8e-27 125.9 228 40.8
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 6.3e-27 125.6 257 38.1
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 6.3e-27 125.6 289 37.7
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 1.1e-26 124.8 238 41.2
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 1.1e-26 124.8 241 39.0
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 4.1e-26 122.9 247 39.7
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 6.9e-26 122.1 252 40.9
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.5e-25 120.9 243 42.8
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 4.5e-25 119.4 154 44.2
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 5.9e-25 119.0 241 35.3
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 1.7e-24 117.5 234 38.9
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 1.7e-24 117.5 248 37.5
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 2.2e-24 117.1 254 38.6
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.2e-24 117.1 296 37.2
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.9e-24 116.7 173 49.7
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 6.5e-24 115.5 249 39.0
VMungo1080G0080 Vigna mungo HOM05D004925 ORTHO05D005643 6.5e-24 115.5 186 45.2
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 1.1e-23 114.8 137 51.8
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.1e-23 114.8 141 48.9
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 1.4e-23 114.4 203 40.9
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 1.4e-23 114.4 205 40.5
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 2.1e-22 110.5 146 45.9
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 4.6e-22 109.4 127 51.2
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 6.1e-22 109.0 213 36.6
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 1.8e-21 107.5 127 51.2
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.8e-21 107.5 127 48.0
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 6.7e-21 105.5 258 39.9
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 2.6e-20 103.6 235 35.7
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 4.8e-19 99.4 295 31.2
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 9.1e-18 95.1 245 34.3
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.5e-17 92.8 312 32.7
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.3e-16 91.3 289 32.9
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 6.5e-16 89.0 136 49.3
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 8.5e-16 88.6 250 35.6
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 8.5e-16 88.6 206 35.0
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 4.2e-15 86.3 134 45.5
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 4.2e-15 86.3 290 32.8
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 4.7e-14 82.8 190 34.7
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 6.7e-13 79.0 93 48.4
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.1e-12 78.2 140 36.4
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 2.6e-12 77.0 185 32.4
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 2.6e-12 77.0 144 35.4
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 4.4e-12 76.3 203 33.5
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 5.7e-12 75.9 91 52.7
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.2e-11 73.9 330 28.8
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 4.8e-11 72.8 108 43.5
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 1.4e-10 71.2 84 52.4
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.8e-10 70.9 112 41.1
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 4.1e-10 69.7 201 33.8
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 9.1e-10 68.6 84 46.4
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 9.1e-10 68.6 56 58.9
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 1.3e-08 64.7 82 43.9
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 3.8e-08 63.2 77 49.4
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 6.5e-08 62.4 57 54.4
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 1.6e-06 57.8 56 53.6


User provided reference genes

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