Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 5.6e-231 803.9 404 100.0
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 2.6e-199 698.7 403 86.1
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.2e-193 679.9 403 85.6
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 2.5e-178 629.0 400 78.8
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 5.7e-175 617.8 404 77.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.8e-174 614.8 391 79.3
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.0e-172 609.4 400 77.0
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 5.0e-171 604.7 401 76.8
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 6.5e-171 604.4 404 75.2
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 9.5e-170 600.5 402 75.6
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.7e-164 582.4 424 72.2
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.0e-147 527.3 407 66.1
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 9.9e-143 510.8 402 64.7
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.7e-142 510.0 396 65.7
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 2.4e-141 506.1 398 63.6
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 7.1e-141 504.6 397 64.5
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.1e-140 503.1 399 63.7
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 3.9e-139 498.8 394 65.0
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 3.3e-138 495.7 395 66.1
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 8.1e-137 491.1 398 63.1
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 4.0e-136 488.8 398 63.8
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 6.8e-136 488.0 302 81.5
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 8.9e-136 487.6 409 62.6
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.0e-135 486.5 394 63.7
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 2.0e-135 486.5 402 63.2
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 5.8e-135 485.0 398 62.8
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 9.9e-135 484.2 391 62.9
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 6.4e-134 481.5 407 62.4
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 8.4e-134 481.1 444 58.8
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.4e-133 480.3 394 62.9
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 2.4e-133 479.6 413 62.0
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 7.1e-133 478.0 408 61.5
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 9.2e-133 477.6 402 61.7
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.7e-131 473.4 397 61.2
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 2.3e-131 473.0 398 62.6
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 5.1e-131 471.9 393 63.9
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 6.6e-131 471.5 394 62.7
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 6.6e-131 471.5 409 59.4
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.1e-130 470.7 402 61.2
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.9e-130 469.9 406 59.4
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 2.5e-130 469.5 403 59.6
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.5e-130 469.5 403 59.6
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 2.5e-130 469.5 405 59.5
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 2.5e-130 469.5 406 61.8
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 5.6e-130 468.4 404 61.4
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 7.3e-130 468.0 400 60.0
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 9.6e-130 467.6 398 60.8
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.2e-129 467.2 398 61.1
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 1.6e-129 466.8 408 58.8
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.8e-129 466.1 406 58.4
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 6.2e-129 464.9 403 58.8
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 6.2e-129 464.9 403 58.8
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.1e-128 464.2 395 60.3
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.8e-128 463.4 403 59.3
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.8e-128 463.4 412 59.2
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 1.8e-128 463.4 408 58.8
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.4e-128 463.0 403 58.8
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.5e-127 460.3 400 60.5
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 2.0e-127 459.9 395 60.3
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.0e-127 459.9 400 59.5
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 2.6e-127 459.5 399 60.7
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 4.4e-127 458.8 399 62.2
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 9.9e-127 457.6 392 60.5
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 9.9e-127 457.6 399 59.6
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.7e-126 456.8 398 59.5
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 2.2e-126 456.4 403 58.6
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 4.9e-126 455.3 397 61.7
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 4.9e-126 455.3 397 59.7
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 4.2e-125 452.2 405 59.0
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 7.1e-125 451.4 399 59.6
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 2.7e-124 449.5 456 55.3
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 7.8e-124 448.0 394 60.2
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 4.3e-122 442.2 394 58.1
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.1e-121 439.9 401 58.4
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.8e-120 436.8 410 57.8
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.0e-120 435.6 393 59.0
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 2.0e-119 433.3 402 55.7
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.8e-119 431.8 397 58.7
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 9.9e-119 431.0 410 57.6
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.7e-118 430.3 393 58.5
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 8.4e-118 427.9 396 58.1
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.9e-117 426.8 417 56.6
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.2e-116 424.1 398 58.0
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.8e-115 420.2 398 56.3
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.9e-114 416.8 389 58.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 4.3e-114 415.6 402 57.0
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 5.6e-114 415.2 387 58.4
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 6.2e-113 411.8 421 54.2
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.1e-112 411.0 408 55.6
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.2e-111 407.5 396 54.8
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 5.8e-111 405.2 371 59.0
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 7.6e-111 404.8 398 54.8
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.9e-109 400.2 384 57.3
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 2.1e-108 396.7 384 57.0
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 3.5e-108 396.0 390 56.9
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 3.5e-108 396.0 384 56.5
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 1.3e-107 394.0 389 55.0
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 5.1e-107 392.1 385 56.6
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 4.8e-105 385.6 412 51.9
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 6.2e-105 385.2 407 54.1
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.1e-104 384.4 415 50.1
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.4e-104 384.0 360 59.7
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.1e-100 370.2 291 61.5
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 2.7e-100 369.8 407 50.9
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 7.9e-100 368.2 467 47.5
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.9e-98 363.6 313 61.3
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 4.2e-93 345.9 269 63.6
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 4.3e-90 335.9 465 44.1
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 8.2e-89 331.6 394 49.7
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 2.4e-88 330.1 351 52.4
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.1e-88 329.7 388 48.2
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 2.0e-82 310.5 406 46.1
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 7.4e-82 308.5 404 43.1
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.0e-79 300.4 441 41.3
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.0e-78 298.1 405 46.7
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 7.2e-77 292.0 253 61.3
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.7e-70 270.8 439 39.4
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.5e-70 268.9 398 43.5
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 3.2e-69 266.5 464 37.1
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 2.2e-62 243.8 399 39.8
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-61 240.7 181 60.2
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 5.4e-56 222.6 306 45.8
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.2e-55 221.5 192 57.8
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 1.2e-55 221.5 217 54.8
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.6e-55 221.1 272 42.6
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 3.1e-48 196.8 155 61.3
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.3e-46 190.7 176 56.2
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 2.3e-46 190.7 100 93.0
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.5e-45 188.0 174 54.6
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.2e-41 174.1 110 70.0
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 3.7e-41 173.3 192 55.7
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.1e-29 135.2 300 32.0
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.5e-29 134.8 175 50.3
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 5.1e-22 109.8 180 42.8
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.5e-21 108.2 146 41.8
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.9e-21 107.8 107 57.9
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.9e-21 107.8 107 57.9
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 7.6e-18 95.9 117 45.3
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 3.8e-17 93.6 64 76.6
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.8e-17 93.6 64 76.6
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 6.0e-15 86.3 90 50.0
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.3e-14 85.1 89 49.4
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 3.0e-14 84.0 65 61.5
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 7.3e-13 79.3 393 24.2
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 6.2e-12 76.3 50 74.0
arahy.Tifrunner.gnm1.ann1.2CLZ47 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.0e-10 71.2 74 55.4
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.7e-09 68.2 155 36.8


User provided reference genes

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