Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 4.0e-298 1027.3 521 100.0
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 7.9e-286 986.5 521 95.6
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.2e-281 972.6 521 94.2
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 2.6e-281 971.5 516 94.4
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.7e-280 968.8 517 94.6
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 3.9e-269 931.0 521 89.1
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.0e-261 906.4 518 87.3
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.2e-257 892.9 521 85.6
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.6e-257 892.5 521 87.1
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.2e-241 839.7 517 80.3
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 2.9e-240 835.1 516 79.5
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 5.7e-236 820.8 479 88.1
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.7e-235 819.3 521 77.5
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 4.1e-234 814.7 512 78.9
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 2.7e-233 812.0 515 76.9
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.2e-230 803.1 513 78.2
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.4e-226 788.9 521 76.8
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 4.1e-226 788.1 518 76.3
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 2.7e-225 785.4 517 75.0
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 3.9e-224 781.6 516 75.6
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.5e-223 779.6 518 74.9
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 2.5e-223 778.9 528 73.5
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 4.3e-223 778.1 520 74.6
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 9.5e-223 776.9 517 75.2
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 3.6e-222 775.0 518 75.1
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.2e-220 770.0 520 74.6
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 3.4e-220 768.5 595 66.6
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 3.2e-218 761.9 515 73.4
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 1.7e-216 756.1 513 72.9
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 3.0e-216 755.4 522 72.6
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 8.6e-216 753.8 504 74.2
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.1e-215 753.4 521 72.9
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 1.5e-215 753.1 519 73.2
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.9e-215 752.7 537 70.9
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 5.6e-215 751.1 520 72.7
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 7.3e-215 750.7 520 72.7
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 8.1e-214 747.3 529 69.4
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.8e-213 746.1 517 70.6
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 6.8e-213 744.2 517 71.4
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 6.8e-213 744.2 519 71.3
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.9e-213 743.8 513 73.9
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.5e-212 743.0 518 71.2
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 2.0e-212 742.7 517 71.6
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 2.6e-212 742.3 519 70.9
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 5.8e-212 741.1 512 71.1
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 2.9e-211 738.8 517 70.4
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.4e-210 736.5 519 69.9
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.2e-210 735.3 515 73.0
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 9.2e-210 733.8 488 75.2
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.3e-208 729.9 515 70.1
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 1.6e-206 723.0 513 70.2
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.1e-206 722.6 508 71.1
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 3.6e-206 721.8 519 67.8
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 3.1e-205 718.8 487 75.8
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.0e-204 716.1 513 69.6
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 9.6e-199 697.2 517 69.4
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.2e-198 696.8 507 70.2
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.6e-198 696.4 514 67.7
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 1.6e-198 696.4 621 59.1
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 4.7e-198 694.9 632 58.9
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 5.8e-196 688.0 496 69.6
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 1.7e-195 686.4 418 84.0
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 1.7e-195 686.4 472 72.0
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 8.4e-195 684.1 523 69.0
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 3.0e-192 675.6 436 79.6
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.6e-191 671.4 492 70.9
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 3.6e-190 668.7 546 62.1
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.6e-190 668.7 520 65.2
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.0e-189 665.2 443 74.0
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 3.8e-187 658.7 512 65.6
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 3.8e-187 658.7 534 64.0
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 8.4e-187 657.5 534 63.7
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.3e-183 645.2 549 61.7
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 1.5e-180 636.7 497 64.4
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.0e-180 636.3 488 66.8
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 4.9e-179 631.7 443 73.1
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 6.4e-179 631.3 519 61.1
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.8e-176 623.2 426 74.2
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 3.3e-175 619.0 418 75.6
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.4e-175 617.8 427 73.3
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 2.1e-174 616.3 457 71.1
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.0e-172 609.8 443 67.7
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.3e-171 607.1 534 60.5
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 9.3e-170 600.9 498 63.7
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 6.1e-169 598.2 432 71.1
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.8e-168 596.7 429 68.3
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 2.3e-168 596.3 576 56.6
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.8e-166 588.6 572 56.5
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 7.9e-161 571.2 555 56.9
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.4e-160 570.5 499 60.9
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 6.5e-155 551.6 423 68.3
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.1e-154 550.8 523 56.0
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 1.2e-153 547.4 513 55.8
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 5.1e-152 542.0 448 61.4
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.5e-151 540.4 387 72.9
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 6.5e-147 525.0 474 60.1
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.1e-146 524.2 459 60.1
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.8e-144 516.9 427 65.6
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 5.2e-144 515.4 474 58.4
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 4.2e-138 495.7 415 64.8
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 1.6e-137 493.8 465 55.9
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 6.3e-134 481.9 376 66.0
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.9e-123 446.4 392 61.5
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.2e-120 435.6 300 74.0
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 4.1e-117 426.0 516 44.4
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 8.6e-115 418.3 341 63.6
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 7.3e-114 415.2 290 70.3
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 1.0e-112 411.4 478 47.3
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.6e-105 387.5 505 43.0
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.0e-104 382.9 290 69.7
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 2.6e-103 380.2 232 83.6
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 2.5e-98 363.6 252 73.4
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.5e-92 343.2 440 45.2
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 3.2e-85 320.1 203 77.3
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 5.1e-83 312.8 370 48.6
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.8e-81 307.0 462 43.3
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.1e-73 280.8 191 73.3
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 2.6e-71 273.9 410 42.4
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.2e-68 265.0 196 73.5
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.8e-67 261.2 433 40.0
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 5.8e-63 246.1 215 62.8
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.9e-58 231.1 183 69.9
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.2e-55 221.9 162 66.0
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.0e-54 218.8 198 58.1
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 1.2e-52 211.8 660 28.3
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.3e-41 175.3 150 60.7
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 2.2e-41 174.5 162 59.9
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 3.4e-39 167.2 466 30.5
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 5.1e-35 153.3 96 81.2
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.5e-34 151.8 164 49.4
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 1.4e-32 145.2 111 71.2
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.6e-31 141.7 122 52.5
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.0e-31 141.4 97 66.0
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.7e-30 138.3 153 49.0
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.7e-30 138.3 153 49.0
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.2e-28 132.1 97 61.9
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.7e-28 130.2 93 72.0
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.6e-26 124.4 78 67.9
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.7e-26 123.2 86 65.1
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 2.2e-25 121.3 540 26.3
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 2.9e-22 110.9 73 72.6
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 6.5e-22 109.8 89 69.7
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.6e-20 105.1 67 80.6
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.1e-20 104.8 90 52.2
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.7e-18 96.7 63 82.5
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.7e-18 96.7 63 82.5
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.3e-17 95.5 56 85.7
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 5.0e-14 83.6 236 33.5
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.2e-13 80.5 45 82.2
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 2.7e-12 77.8 82 56.1
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.7e-12 77.0 54 55.6
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.6e-10 71.2 55 69.1


User provided reference genes

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