Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02756_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.7e-41 171.4 78 100.0
Ca_02758_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.7e-41 171.4 78 100.0
Ca_02994_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.3e-35 152.5 73 93.2
Ca_17958_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.5e-26 121.7 58 96.6
Medtr3g082190 Medicago truncatula HOM05D006134 ORTHO05D007671 2.1e-25 118.6 58 91.4
Psat5g110600 Pisum sativum HOM05D006134 ORTHO05D007671 8.0e-25 116.7 58 87.9
Phvul.005G034200 Phaseolus vulgaris HOM05D006134 ORTHO05D007671 1.8e-24 115.5 58 86.2
Atru.chr9.1880 Acer truncatum HOM05D006134 ORTHO05D007671 3.0e-24 114.8 58 86.2
Glyma.11G156931 Glycine max HOM05D006134 ORTHO05D007671 3.0e-24 114.8 58 86.2
Ciclev10029589m.g Citrus clementina HOM05D006134 ORTHO05D007671 4.0e-24 114.4 58 86.2
Lj6g0003235 Lotus japonicus HOM05D006134 ORTHO05D007671 6.8e-24 113.6 58 84.5
Lalb_Chr10g0093471 Lupinus albus HOM05D006134 ORTHO05D007671 1.2e-23 112.8 58 84.5
Lalb_Chr10g0093491 Lupinus albus HOM05D006134 ORTHO05D007671 1.2e-23 112.8 58 84.5
arahy.Tifrunner.gnm1.ann1.A6PCA1 Arachis hypogaea HOM05D006134 ORTHO05D007671 3.4e-23 111.3 58 82.8
arahy.Tifrunner.gnm1.ann1.PD8D7M Arachis hypogaea HOM05D006134 ORTHO05D007671 3.4e-23 111.3 58 82.8
VMungo1080G1627 Vigna mungo HOM05D006134 ORTHO05D007671 4.4e-23 110.9 58 81.0
vmacro02291 Vaccinium macrocarpon HOM05D006134 ORTHO05D007671 9.8e-23 109.8 58 81.0
Haze_00699 Corylus avellana HOM05D006134 ORTHO05D007671 1.3e-22 109.4 58 82.8
CANSAT80G1040 Cannabis sativa HOM05D006134 ORTHO05D007671 1.7e-22 109.0 58 81.0
GSVIVG01023976001 Vitis vinifera HOM05D006134 ORTHO05D007671 2.2e-22 108.6 58 79.3
CiPaw.10G137600 Carya illinoinensis HOM05D006134 ORTHO05D007671 4.9e-22 107.5 57 82.5
Cc02_g30030 Coffea canephora HOM05D006134 ORTHO05D007671 4.9e-22 107.5 58 79.3
AUR62010905 Chenopodium quinoa HOM05D006134 ORTHO05D007671 8.3e-22 106.7 58 79.3
AUR62021421 Chenopodium quinoa HOM05D006134 ORTHO05D007671 8.3e-22 106.7 58 79.3
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 1.8e-21 105.5 58 79.3
Manes.11G097800 Manihot esculenta HOM05D006134 ORTHO05D007671 1.8e-21 105.5 58 77.6
EL10Ac9g21342 Beta vulgaris HOM05D006134 ORTHO05D007671 2.4e-21 105.1 58 79.3
CsaV3_2G009990 Cucumis sativus L. HOM05D006134 ORTHO05D007671 3.1e-21 104.8 58 79.3
Lsat_1_v5_gn_1_25060 Lactuca sativa HOM05D006134 ORTHO05D007671 3.1e-21 104.8 58 77.6
Ah.01g023220 Amaranthus hybridus HOM05D006134 ORTHO05D007671 4.1e-21 104.4 58 77.6
CSS0024749 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 4.1e-21 104.4 58 75.9
CSS0037732 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 4.1e-21 104.4 58 75.9
Hund14365 Selenicereus undatus HOM05D006134 ORTHO05D007671 4.1e-21 104.4 58 75.9
ClCG11G010360 Citrullus lanatus HOM05D006134 ORTHO05D007671 5.4e-21 104.0 58 79.3
MELO3C008634.2 Cucumis melo HOM05D006134 ORTHO05D007671 5.4e-21 104.0 58 79.3
Nitab4.5_0000890g0130 Nicotiana tabacum HOM05D006134 ORTHO05D007671 5.4e-21 104.0 66 68.2
CSS0027024 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 9.1e-21 103.2 58 74.1
Cpa.g.sc182.12 Carica papaya HOM05D006134 ORTHO05D007671 1.2e-20 102.8 58 77.6
Dinv21074 Davidia involucrata HOM05D006134 ORTHO05D007671 1.2e-20 102.8 58 77.6
Nitab4.5_0000101g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 1.2e-20 102.8 57 77.2
Rhsim11G0193500 Rhododendron simsii HOM05D006134 ORTHO05D007671 1.6e-20 102.4 59 78.0
HanXRQChr12g0383651 Helianthus annuus HOM05D006134 ORTHO05D007671 3.5e-20 101.3 58 72.4
Sed0025018 Sechium edule HOM05D006134 ORTHO05D007671 5.9e-20 100.5 58 75.9
PGSC0003DMG400020551 Solanum tuberosum HOM05D006134 ORTHO05D007671 5.9e-20 100.5 57 75.4
Peaxi162Scf00359g00813 Petunia axillaris HOM05D006134 ORTHO05D007671 7.7e-20 100.1 57 73.7
Solyc06g007480.3 Solanum lycopersicum HOM05D006134 ORTHO05D007671 7.7e-20 100.1 57 75.4
Sopen06g002390 Solanum pennellii HOM05D006134 ORTHO05D007671 7.7e-20 100.1 57 75.4
QL11p052022 Quercus lobata HOM05D006134 ORTHO05D007671 1.0e-19 99.8 57 73.7
QL11p052248 Quercus lobata HOM05D006134 ORTHO05D007671 1.0e-19 99.8 57 73.7
SGA_v2.0_scaffold207G41895 Striga asiatica HOM05D006134 ORTHO05D007671 1.0e-19 99.8 58 75.9
CAN.G181.11 Capsicum annuum HOM05D006134 ORTHO05D007671 1.7e-19 99.0 57 75.4
PGR042G1126 Punica granatum HOM05D006134 ORTHO05D007671 1.7e-19 99.0 58 77.6
FvH4_5g23580 Fragaria vesca HOM05D006134 ORTHO05D007671 2.3e-19 98.6 58 79.3
FAN04G0013 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.3e-19 98.6 58 79.3
FAN08G0898 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.3e-19 98.6 58 79.3
FAN18G0426 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.3e-19 98.6 58 79.3
FAN18G3769 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.3e-19 98.6 58 79.3
TAR376G1190 Trochodendron aralioides HOM05D006134 ORTHO05D007671 2.3e-19 98.6 58 72.4
COL.COLO4_32379 Corchorus olitorius HOM05D006134 ORTHO05D007671 2.9e-19 98.2 58 77.6
FAN13G0082 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.9e-19 98.2 58 79.3
Oeu055649.1 Olea europaea HOM05D006134 ORTHO05D007671 6.6e-19 97.1 58 74.1
Nn6g31911 Nelumbo nucifera HOM05D006134 ORTHO05D007671 8.6e-19 96.7 58 70.7
RcHm_v2.0_Chr7g0212881 Rosa chinensis HOM05D006134 ORTHO05D007671 8.6e-19 96.7 58 77.6
SGA_v2.0_scaffold80G25864 Striga asiatica HOM05D006134 ORTHO05D007671 1.1e-18 96.3 58 74.1
Duzib248G0743 Durio zibethinus HOM05D006134 ORTHO05D007671 1.5e-18 95.9 58 74.1
ECA247G3382 Erigeron canadensis HOM05D006134 ORTHO05D007671 1.5e-18 95.9 58 69.0
Eucgr.F02572 Eucalyptus grandis HOM05D006134 ORTHO05D007671 1.5e-18 95.9 58 72.4
Potri.016G127200 Populus trichocarpa HOM05D006134 ORTHO05D007671 2.5e-18 95.1 58 75.9
TWI79G0531 Tripterygium wilfordii HOM05D006134 ORTHO05D007671 2.5e-18 95.1 58 74.1
SHI24498 Sapria himalayana HOM05D006134 ORTHO05D007671 4.2e-18 94.4 59 69.5
Sabra16G0121200 Salix brachista HOM05D006134 ORTHO05D007671 5.5e-18 94.0 58 74.1
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 5.5e-18 94.0 58 74.1
THA.LOC104807806 Tarenaya hassleriana HOM05D006134 ORTHO05D007671 5.5e-18 94.0 58 72.4
Aqoxy5G01105 Aquilegia oxysepala HOM05D006134 ORTHO05D007671 7.2e-18 93.6 58 75.9
Duzib052G0391 Durio zibethinus HOM05D006134 ORTHO05D007671 7.2e-18 93.6 58 74.1
Migut.N01297 Erythranthe guttata HOM05D006134 ORTHO05D007671 7.2e-18 93.6 58 72.4
Oeu002964.1 Olea europaea HOM05D006134 ORTHO05D007671 7.2e-18 93.6 58 72.4
SalBow3G4511 Salvia bowleyana HOM05D006134 ORTHO05D007671 7.2e-18 93.6 58 72.4
HanXRQChr10g0314981 Helianthus annuus HOM05D006134 ORTHO05D007671 9.5e-18 93.2 58 69.0
unitig_52.g17376 Utricularia gibba HOM05D006134 ORTHO05D007671 9.5e-18 93.2 58 70.7
ATR0730G227 Amborella trichopoda HOM05D006134 ORTHO05D007671 1.2e-17 92.8 58 67.2
MSTRG.5438 Avicennia marina HOM05D006134 ORTHO05D007671 2.1e-17 92.0 58 70.7
Gohir.D01G010100 Gossypium hirsutum HOM05D006134 ORTHO05D007671 2.1e-17 92.0 58 74.1
Gorai.002G012200 Gossypium raimondii HOM05D006134 ORTHO05D007671 2.1e-17 92.0 58 74.1
Aa31LG6G16690 Aethionema arabicum HOM05D006134 ORTHO05D007671 2.8e-17 91.7 58 69.0
Thhalv10026572m.g Eutrema salsugineum HOM05D006134 ORTHO05D007671 2.8e-17 91.7 58 70.7
CDE04G1640 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 3.6e-17 91.3 58 69.0
Sp7g37280 Schrenkiella parvula HOM05D006134 ORTHO05D007671 3.6e-17 91.3 58 70.7
TAR628G0583 Trochodendron aralioides HOM05D006134 ORTHO05D007671 8.0e-17 90.1 58 67.2
PSO210G5022 Papaver somniferum HOM05D006134 ORTHO05D007671 1.8e-16 89.0 57 64.9
Gohir.A01G010500 Gossypium hirsutum HOM05D006134 ORTHO05D007671 2.3e-16 88.6 58 72.4
PSO170G0646 Papaver somniferum HOM05D006134 ORTHO05D007671 2.3e-16 88.6 57 64.9
Thecc.02G130200 Theobroma cacao HOM05D006134 ORTHO05D007671 2.3e-16 88.6 58 69.0
CARHR294230 Cardamine hirsuta HOM05D006134 ORTHO05D007671 3.0e-16 88.2 64 59.4
CDE02G2427 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 3.0e-16 88.2 58 65.5
Mapoly0028s0104 Marchantia polymorpha HOM05D006134 ORTHO05D007671 2.2e-14 82.0 54 64.8
Dinv31631 Davidia involucrata HOM05D006134 ORTHO05D007671 8.3e-14 80.1 47 74.5
MD12G1003500 Malus domestica HOM05D006134 ORTHO05D007671 1.1e-13 79.7 36 91.7
Pp3c14_10610 Physcomitrium patens HOM05D006134 ORTHO05D007671 1.1e-13 79.7 56 60.7
Pp3c14_10611 Physcomitrium patens HOM05D006134 ORTHO05D007671 1.1e-13 79.7 56 60.7
Sc08g0002730 Simmondsia chinensis HOM05D006134 ORTHO05D007671 1.1e-13 79.7 58 69.0
Carub.0007s0038 Capsella rubella HOM05D006134 ORTHO05D007671 1.4e-13 79.3 58 63.8
Sed0020335 Sechium edule HOM05D006134 ORTHO05D007671 1.4e-13 79.3 60 63.3
AUR62013003 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.8e-13 79.0 36 88.9
AT4G38495 Arabidopsis thaliana HOM05D006134 ORTHO05D007671 2.4e-13 78.6 57 61.4
AUR62010013 Chenopodium quinoa HOM05D006134 ORTHO05D007671 7.0e-13 77.0 36 86.1
AL7G10360 Arabidopsis lyrata HOM05D006134 ORTHO05D007671 2.7e-12 75.1 52 67.3
AUR62015152 Chenopodium quinoa HOM05D006134 ORTHO05D007671 2.7e-12 75.1 36 86.1
SMO367G0732 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 2.7e-12 75.1 57 61.4
Zm00001eb420290 Zea mays HOM05D006134 ORTHO05D007671 3.9e-11 71.2 58 51.7
HanXRQChr07g0198481 Helianthus annuus HOM05D006134 ORTHO05D007671 8.6e-11 70.1 40 72.5
Os04g0274400 Oryza sativa ssp. japonica HOM05D006134 ORTHO05D007671 1.1e-10 69.7 58 50.0
BcaNung01304 Brassica carinata HOM05D006134 ORTHO05D007671 3.3e-10 68.2 57 56.1
BcaNung04221 Brassica carinata HOM05D006134 ORTHO05D007671 3.3e-10 68.2 47 66.0
C01p00090 Brassica napus HOM05D006134 ORTHO05D007671 3.3e-10 68.2 57 56.1
BolC1t00014H Brassica oleracea HOM05D006134 ORTHO05D007671 3.3e-10 68.2 57 56.1
Prupe.7G004000 Prunus persica HOM05D006134 ORTHO05D007671 3.3e-10 68.2 38 78.9
A01p00050 Brassica napus HOM05D006134 ORTHO05D007671 5.6e-10 67.4 47 63.8
A07p02890 Brassica napus HOM05D006134 ORTHO05D007671 5.6e-10 67.4 47 63.8
BraA01t00010Z Brassica rapa HOM05D006134 ORTHO05D007671 5.6e-10 67.4 47 63.8
BraA07t28089Z Brassica rapa HOM05D006134 ORTHO05D007671 5.6e-10 67.4 47 63.8
CBR_g12196 Chara braunii HOM05D006134 ORTHO05D007671 6.8e-08 60.5 51 58.8
Prupe.4G038000 Prunus persica HOM05D006134 ORTHO05D007671 4.4e-07 57.8 33 72.7


User provided reference genes

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