Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 3.6e-114 414.8 199 100.0
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 4.7e-45 185.3 209 55.5
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 1.2e-37 160.6 110 76.4
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 1.6e-32 143.7 84 85.7
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 1.6e-32 143.7 84 85.7
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 1.6e-32 143.7 84 85.7
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 1.6e-32 143.7 84 85.7
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 1.6e-32 143.7 84 85.7
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 1.6e-32 143.7 84 85.7
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 1.7e-26 123.6 193 45.1
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 1.7e-26 123.6 193 45.1
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 6.3e-26 121.7 146 52.1
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 4.1e-25 119.0 64 90.6
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 4.1e-25 119.0 193 44.0
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 4.1e-25 119.0 64 92.2
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 4.1e-25 119.0 64 92.2
BraSC179t45783Z Brassica rapa HOM05D008016 ORTHO05D004271 2.7e-24 116.3 84 72.6
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 3.5e-24 115.9 164 47.6
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 7.8e-24 114.8 64 92.2
Oeu020621.1 Olea europaea HOM05D007952 ORTHO05D009823 1.3e-23 114.0 66 80.3
Medtr3g035635 Medicago truncatula HOM05D007952 ORTHO05D009823 2.3e-23 113.2 70 78.6
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 2.9e-23 112.8 66 80.3
BolSC44t60812H Brassica oleracea HOM05D007952 ORTHO05D009823 2.9e-23 112.8 66 80.3
Lsat_1_v5_gn_4_99801 Lactuca sativa HOM05D007952 ORTHO05D009823 2.9e-23 112.8 66 80.3
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 2.9e-23 112.8 66 80.3
PGSC0003DMG400035391 Solanum tuberosum HOM05D007952 ORTHO05D009823 2.9e-23 112.8 66 80.3
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 3.8e-23 112.5 66 80.3
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.6e-22 108.6 66 77.3
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 9.5e-22 107.8 61 88.5
arahy.Tifrunner.gnm1.ann1.GIFH8E Arachis hypogaea HOM05D007952 ORTHO05D009823 1.6e-21 107.1 81 66.7
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 1.6e-21 107.1 60 91.7
Nn5g29057 Nelumbo nucifera HOM05D007952 ORTHO05D009823 6.1e-21 105.1 66 77.3
RcHm_v2.0_Chr4g0392721 Rosa chinensis HOM05D008016 ORTHO05D004271 6.1e-21 105.1 61 85.2
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 8.0e-21 104.8 74 70.3
Sc01g0006530 Simmondsia chinensis HOM05D007952 ORTHO05D009823 1.0e-20 104.4 66 75.8
Medtr0002s0270 Medicago truncatula HOM05D007952 ORTHO05D009823 1.4e-20 104.0 66 74.2
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 3.0e-20 102.8 85 62.4
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 3.0e-20 102.8 85 62.4
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 3.0e-20 102.8 85 62.4
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 5.2e-20 102.1 103 53.4
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 2.0e-19 100.1 60 83.3
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 2.0e-19 100.1 60 83.3
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 2.0e-19 100.1 60 83.3
Sc04g0003580 Simmondsia chinensis HOM05D007952 ORTHO05D009823 2.0e-19 100.1 66 71.2
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 5.7e-19 98.6 80 63.8
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.7e-19 98.6 90 57.8
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.7e-19 98.6 90 57.8
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.7e-19 98.6 90 57.8
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.7e-19 98.6 90 57.8
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 7.5e-19 98.2 85 60.0
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 7.5e-19 98.2 60 76.7
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 1.3e-18 97.4 81 67.9
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 1.7e-18 97.1 65 73.8
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.1e-17 94.4 54 87.0
arahy.Tifrunner.gnm1.ann1.PHD7EH Arachis hypogaea HOM05D007952 ORTHO05D009823 1.4e-17 94.0 66 68.2
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 3.2e-17 92.8 63 77.8
Sc21g0004590 Simmondsia chinensis HOM05D007952 ORTHO05D009823 4.1e-17 92.4 76 60.5
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 5.4e-17 92.0 54 85.2
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 1.2e-16 90.9 61 77.0
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 1.2e-16 90.9 55 83.6
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 1.2e-16 90.9 78 66.7
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 1.2e-16 90.9 61 72.1
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 1.6e-16 90.5 65 64.6
BolSC45t60899H Brassica oleracea HOM05D008016 ORTHO05D004271 1.3e-15 87.4 45 93.3
DCAR_004958 Daucus carota HOM05D007952 ORTHO05D009823 1.3e-15 87.4 52 78.8
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.7e-15 87.0 50 86.0
Psat0ss8367g0160 Pisum sativum HOM05D001387 ORTHO05D001250 3.9e-15 85.9 61 67.2
arahy.Tifrunner.gnm1.ann1.J5KLX8 Arachis hypogaea HOM05D007952 ORTHO05D009823 8.6e-15 84.7 84 53.6
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 8.6e-15 84.7 62 75.8
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-14 84.3 89 59.6
arahy.Tifrunner.gnm1.ann1.DEN066 Arachis hypogaea HOM05D001966 ORTHO05D031508 7.3e-14 81.6 67 71.6
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.8e-13 79.7 69 62.3
CAN.G1186.47 Capsicum annuum HOM05D007952 ORTHO05D009823 3.6e-13 79.3 56 69.6
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 3.6e-13 79.3 60 66.7
Peaxi162Scf00002g00723 Petunia axillaris HOM05D007952 ORTHO05D009823 6.8e-12 75.1 54 64.8
BcaC04g20704 Brassica carinata HOM05D007952 ORTHO05D009823 1.2e-11 74.3 69 58.0
Oeu000007.1 Olea europaea HOM05D007952 ORTHO05D009823 2.0e-11 73.6 63 60.3
EL10As10g23962 Beta vulgaris HOM05D007952 ORTHO05D009823 2.6e-11 73.2 37 89.2
Lalb_Chr20g0115041 Lupinus albus HOM05D008016 ORTHO05D004271 4.4e-11 72.4 62 67.7
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 1.3e-10 70.9 63 60.3
Hma1.2p1_0594F.1_g185798 Hydrangea macrophylla HOM05D007952 ORTHO05D009823 1.3e-10 70.9 37 86.5
Lj2C1239G84 Lonicera japonica HOM05D007952 ORTHO05D009823 1.3e-10 70.9 37 86.5
arahy.Tifrunner.gnm1.ann1.KSIE27 Arachis hypogaea HOM05D008037 ORTHO05D004271 1.7e-10 70.5 66 62.1
Oeu012768.1 Olea europaea HOM05D007952 ORTHO05D009823 1.7e-10 70.5 58 62.1
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 2.2e-10 70.1 37 86.5
MBI08_g48227_MAGBIO Magnolia biondii HOM05D007952 ORTHO05D009823 2.2e-10 70.1 37 86.5
Peaxi162Scf00987g00215 Petunia axillaris HOM05D007952 ORTHO05D009823 2.2e-10 70.1 37 86.5
unitig_87.g27919 Utricularia gibba HOM05D007952 ORTHO05D009823 2.2e-10 70.1 37 86.5
unitig_87.g28035 Utricularia gibba HOM05D007952 ORTHO05D009823 2.2e-10 70.1 37 86.5
unitig_91.g26519 Utricularia gibba HOM05D007952 ORTHO05D009823 2.2e-10 70.1 37 86.5
Atru.chr9.365 Acer truncatum HOM05D007952 ORTHO05D009823 8.3e-10 68.2 37 83.8
SEGI_20804 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.1e-09 67.8 39 79.5
Sc23g0003910 Simmondsia chinensis HOM05D007952 ORTHO05D009823 1.1e-09 67.8 46 69.6
Solyc11g044665.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 1.1e-09 67.8 61 60.7
SEGI_08440 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.4e-09 67.4 39 76.9
SEGI_09919 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.4e-09 67.4 39 76.9
SEGI_21867 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.4e-09 67.4 39 76.9
SEGI_38349 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.4e-09 67.4 39 76.9
ECA232G1868 Erigeron canadensis HOM05D000002 ORTHO05D002065 7.0e-09 65.1 35 82.9
Gohir.1Z049580 Gossypium hirsutum HOM05D008016 ORTHO05D004271 7.0e-09 65.1 33 93.9
SEGI_02200 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 7.0e-09 65.1 39 74.4
MD00G1140100 Malus domestica HOM05D008016 ORTHO05D004271 1.0e-07 61.2 41 73.2
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 3.0e-07 59.7 41 68.3
CiPaw.14G028800 Carya illinoinensis HOM05D008016 ORTHO05D004271 8.6e-07 58.2 50 60.0
SEGI_35056 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 8.6e-07 58.2 31 80.6
Nitab4.5_0004841g0080 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.1e-06 57.8 58 62.1
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 1.1e-06 57.8 81 45.7
Lsat_1_v5_gn_5_36201 Lactuca sativa HOM05D048309 ORTHO05D031508 1.9e-06 57.0 68 48.5
BolC6t36075H Brassica oleracea HOM05D000963 ORTHO05D009823 2.5e-06 56.6 27 88.9
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 3.3e-06 56.2 32 87.5
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 3.3e-06 56.2 51 64.7
Nitab4.5_0007400g0010 Nicotiana tabacum HOM05D007952 ORTHO05D009823 4.3e-06 55.8 29 82.8
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 4.3e-06 55.8 41 70.7
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 7.3e-06 55.1 62 56.5
CBR_g12953 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-06 55.1 38 63.2
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 9.5e-06 54.7 33 84.8


User provided reference genes

Program Settings