Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 9.3e-184 646.7 326 100.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 2.4e-163 578.9 324 90.4
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 4.5e-162 574.7 323 89.8
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 3.8e-161 571.6 324 89.5
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 7.7e-154 547.4 323 85.8
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.3e-153 546.6 323 86.1
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.1e-152 543.5 324 84.6
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.9e-152 542.7 325 84.6
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 6.1e-151 537.7 324 85.2
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 2.2e-148 529.3 322 82.6
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 9.1e-147 523.9 322 81.7
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 7.7e-146 520.8 324 80.2
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 4.2e-144 515.0 323 80.2
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 3.3e-133 478.8 368 69.8
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.9e-128 463.0 321 70.7
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 4.2e-128 461.8 313 71.6
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 8.0e-127 457.6 273 84.2
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.4e-126 456.8 327 69.7
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 7.5e-125 451.1 322 69.3
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 3.7e-124 448.7 324 70.1
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 4.8e-124 448.4 276 81.5
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 8.3e-124 447.6 312 70.2
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 5.4e-123 444.9 282 80.9
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 5.4e-123 444.9 324 68.2
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 2.0e-122 443.0 311 69.5
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 3.5e-122 442.2 311 70.4
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.5e-122 442.2 322 68.3
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 4.5e-122 441.8 323 68.4
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 5.9e-122 441.4 322 68.6
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 5.9e-122 441.4 323 68.4
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 7.7e-122 441.0 322 69.6
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.0e-121 440.7 323 68.4
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.7e-121 439.9 324 68.2
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.7e-121 439.9 324 68.8
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.3e-121 439.5 322 68.3
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 2.9e-121 439.1 332 66.9
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 8.6e-121 437.6 328 67.7
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.9e-120 436.4 335 66.6
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 4.2e-120 435.3 325 66.5
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 9.5e-120 434.1 316 68.0
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.2e-119 433.7 311 68.8
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.8e-119 432.6 317 67.5
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 6.1e-119 431.4 316 67.7
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.8e-118 429.9 320 66.6
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 6.8e-118 427.9 317 66.6
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 6.8e-118 427.9 312 67.9
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 6.8e-118 427.9 311 70.1
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 8.8e-118 427.6 323 65.0
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.5e-117 426.8 320 66.6
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.5e-117 426.8 308 70.5
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.5e-117 426.8 323 65.9
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 2.0e-117 426.4 311 67.8
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 2.0e-117 426.4 322 67.4
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 4.4e-117 425.2 312 66.7
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 9.8e-117 424.1 320 65.9
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.7e-116 423.3 322 67.1
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.8e-116 422.5 325 67.1
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.8e-116 422.5 325 63.7
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.8e-116 422.5 308 69.5
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 4.9e-116 421.8 335 63.9
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 4.9e-116 421.8 311 65.3
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 8.3e-116 421.0 346 62.7
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.1e-115 420.6 322 64.6
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.8e-115 419.9 348 62.4
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 2.4e-115 419.5 322 65.8
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 4.1e-115 418.7 318 63.5
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 4.1e-115 418.7 320 65.9
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 5.4e-115 418.3 318 64.5
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 7.0e-115 417.9 324 65.1
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 7.8e-114 414.5 273 73.3
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.3e-113 412.9 350 62.9
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 2.3e-113 412.9 324 64.2
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 6.6e-113 411.4 319 64.9
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.1e-112 410.6 322 65.2
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.5e-112 410.2 306 68.3
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.9e-112 409.8 324 64.8
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.9e-112 409.8 318 65.1
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.2e-111 407.1 320 64.1
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 2.1e-111 406.4 310 64.2
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.8e-111 406.0 321 61.7
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.6e-111 405.6 391 56.3
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 6.1e-111 404.8 324 64.5
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.0e-111 404.4 344 61.9
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 8.9e-110 401.0 309 65.0
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.2e-109 400.6 309 64.7
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 2.6e-109 399.4 310 64.8
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 3.4e-109 399.1 327 60.6
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 7.5e-109 397.9 351 58.4
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.3e-108 397.1 275 72.4
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.2e-108 396.4 309 62.5
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 3.7e-108 395.6 351 60.7
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 6.4e-108 394.8 309 63.1
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 8.3e-108 394.4 327 65.1
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 4.1e-107 392.1 293 66.9
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 7.0e-107 391.3 310 63.9
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.2e-106 390.6 317 62.5
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 4.6e-106 388.7 309 62.5
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.3e-105 386.3 324 63.0
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 3.0e-105 386.0 309 62.1
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 6.6e-105 384.8 335 58.2
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 1.5e-104 383.6 310 61.9
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 7.3e-104 381.3 310 62.3
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.4e-102 377.1 310 61.0
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 3.1e-102 375.9 273 67.4
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 3.1e-102 375.9 275 67.3
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 2.4e-99 366.3 292 63.7
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.3e-97 360.5 311 59.2
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.7e-97 360.1 311 60.5
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 3.3e-96 355.9 324 57.7
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 3.3e-96 355.9 305 59.7
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.6e-95 353.6 321 57.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 3.6e-95 352.4 253 67.6
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 3.6e-95 352.4 303 55.8
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 6.2e-95 351.7 265 67.2
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 8.1e-95 351.3 330 57.0
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.3e-92 344.0 304 57.2
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.9e-92 342.8 323 57.3
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 2.4e-91 339.7 307 56.0
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.2e-91 339.3 327 54.7
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 3.9e-89 332.4 319 56.1
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.5e-88 330.5 247 64.4
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.3e-84 317.4 323 53.3
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 3.3e-80 302.8 311 54.3
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 4.3e-80 302.4 227 67.4
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.1e-78 297.7 233 63.1
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 3.4e-77 292.7 172 89.5
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 9.9e-77 291.2 457 41.4
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 6.4e-76 288.5 201 70.1
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 6.6e-73 278.5 315 49.2
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.8e-71 273.1 308 48.4
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 7.6e-69 265.0 166 84.3
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 2.6e-61 240.0 180 67.8
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.4e-61 239.6 210 61.4
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.3e-60 237.7 350 41.4
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.7e-60 237.3 183 64.5
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.2e-60 236.9 186 64.0
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 2.9e-60 236.5 163 69.3
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 5.5e-59 232.3 197 56.3
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.2e-58 231.1 172 69.2
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.0e-57 226.5 268 48.5
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 9.6e-56 221.5 216 55.1
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 2.8e-55 219.9 172 64.5
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 2.8e-55 219.9 367 39.0
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 1.0e-52 211.5 221 50.2
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 2.9e-52 209.9 284 44.7
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.2e-51 206.1 248 47.6
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 3.0e-49 199.9 148 66.9
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.5e-48 197.6 217 49.8
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 5.3e-46 189.1 138 63.8
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.5e-45 187.6 195 54.4
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.2e-44 183.7 327 41.0
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 6.5e-44 182.2 140 67.1
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-41 174.5 182 56.6
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.9e-40 170.6 132 65.2
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 2.2e-39 167.2 169 47.3
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 2.8e-39 166.8 121 63.6
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.4e-38 164.5 117 65.8
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 3.2e-35 153.3 152 53.9
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.1e-34 150.6 142 61.3
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.2e-29 134.8 106 66.0
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.8e-25 120.9 126 50.8
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.3e-25 120.6 114 57.0
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 9.7e-24 115.2 116 54.3
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.8e-20 103.2 62 79.0
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 6.3e-15 85.9 80 55.0
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 1.1e-14 85.1 93 49.5
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.4e-14 84.7 80 55.0
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-13 81.6 92 51.1
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 9.4e-11 72.0 93 44.1
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.1e-10 70.9 61 57.4
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 1.8e-09 67.8 61 57.4
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 6.8e-09 65.9 45 73.3
arahy.Tifrunner.gnm1.ann1.8FT8UW Arachis hypogaea HOM05D003898 ORTHO05D000721 1.5e-08 64.7 50 62.0
arahy.Tifrunner.gnm1.ann1.JWT6XR Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-08 64.7 50 62.0
TPR.G17539 Trifolium pratense HOM05D003898 ORTHO05D411187 7.5e-08 62.4 37 78.4
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 1.1e-06 58.5 56 48.2
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-06 57.8 40 75.0
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 4.1e-06 56.6 36 69.4
Gorai.007G225200 Gossypium raimondii HOM05D034602 ORTHO05D048040 9.1e-06 55.5 34 73.5


User provided reference genes

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