Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.4e-160 569.7 319 100.0
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 6.8e-147 524.2 319 87.5
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.5e-141 506.5 320 85.3
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 2.5e-141 505.8 317 90.2
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.1e-139 500.4 307 87.3
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.7e-137 491.9 317 89.3
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.6e-135 486.5 316 88.0
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 4.9e-129 464.9 304 85.9
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 8.3e-129 464.2 305 86.2
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 6.8e-123 444.5 319 79.0
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 7.6e-122 441.0 303 82.2
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 7.1e-120 434.5 319 79.0
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 4.6e-119 431.8 319 77.4
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.3e-118 430.3 319 77.7
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.5e-117 426.8 308 74.0
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 3.6e-116 422.2 308 73.7
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 3.6e-116 422.2 308 73.7
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 8.1e-116 421.0 307 78.2
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.1e-115 420.6 306 78.1
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 3.1e-115 419.1 305 79.3
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 3.1e-115 419.1 307 78.8
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.0e-114 416.4 308 73.7
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 7.6e-114 414.5 308 73.4
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.7e-113 413.3 308 73.4
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 2.9e-113 412.5 316 69.9
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 2.9e-113 412.5 323 71.2
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 6.4e-113 411.4 323 71.2
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 8.4e-113 411.0 301 72.8
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.9e-112 409.8 309 70.9
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 3.2e-112 409.1 305 72.5
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 5.4e-112 408.3 307 72.3
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.6e-111 406.8 305 78.0
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.6e-111 406.8 304 78.6
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 3.5e-111 405.6 306 75.8
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 4.6e-111 405.2 306 76.1
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 4.6e-111 405.2 305 75.7
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 7.9e-111 404.4 307 75.2
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 7.9e-111 404.4 308 70.1
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.7e-110 403.3 303 76.2
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 3.0e-110 402.5 303 72.6
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 5.1e-110 401.7 313 70.0
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 5.1e-110 401.7 313 70.0
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 6.6e-110 401.4 308 69.8
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.6e-110 401.4 305 78.0
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 8.7e-110 401.0 307 77.2
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.1e-109 400.6 304 75.3
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.1e-109 400.6 307 77.9
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.5e-109 400.2 305 70.2
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.9e-109 399.8 304 69.7
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.9e-109 399.8 308 68.8
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 2.5e-109 399.4 320 67.8
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 2.5e-109 399.4 307 71.3
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.6e-109 398.3 303 70.6
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 7.3e-109 397.9 295 72.5
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.1e-108 396.4 305 69.2
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.1e-108 396.4 305 71.5
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.1e-108 396.4 305 72.1
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.8e-108 396.0 292 73.3
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 3.6e-108 395.6 306 74.5
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 3.6e-108 395.6 306 74.5
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 3.6e-108 395.6 320 67.8
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 4.8e-108 395.2 307 68.7
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 4.8e-108 395.2 298 77.9
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 6.2e-108 394.8 306 68.3
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.1e-107 394.0 314 75.8
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.4e-107 393.7 305 71.5
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-107 393.7 314 76.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 1.8e-107 393.3 303 71.3
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 3.1e-107 392.5 304 74.0
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 3.1e-107 392.5 306 74.2
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 4.0e-107 392.1 304 71.4
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 4.0e-107 392.1 304 71.4
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.3e-107 391.7 307 70.7
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 5.3e-107 391.7 304 72.0
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.9e-107 391.3 296 78.7
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 6.9e-107 391.3 303 69.6
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 9.0e-107 391.0 309 73.8
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.5e-106 390.2 318 71.7
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 2.0e-106 389.8 306 73.2
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 2.0e-106 389.8 306 74.5
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 5.8e-106 388.3 306 73.2
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.7e-105 386.7 303 72.3
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.7e-105 386.7 304 75.7
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 6.4e-105 384.8 307 73.3
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.9e-104 383.3 313 72.2
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 2.4e-104 382.9 315 68.3
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.2e-103 380.6 296 70.6
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 2.1e-103 379.8 304 73.0
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 2.1e-103 379.8 307 70.4
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 2.1e-103 379.8 306 73.5
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 4.6e-103 378.6 305 68.2
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 4.6e-103 378.6 301 68.1
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 6.0e-103 378.3 304 73.0
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 5.1e-102 375.2 307 72.6
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 5.6e-101 371.7 303 66.0
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 1.3e-100 370.5 295 74.2
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 2.1e-100 369.8 312 66.7
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 6.2e-100 368.2 307 71.7
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.8e-99 366.7 295 74.2
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 3.1e-99 365.9 304 65.1
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 4.5e-98 362.1 296 73.6
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.5e-98 362.1 332 62.7
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 5.8e-98 361.7 305 63.9
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 7.6e-98 361.3 315 67.6
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.7e-97 360.1 304 68.4
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 2.2e-97 359.8 295 73.6
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 2.9e-97 359.4 305 70.8
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.8e-94 350.1 296 65.2
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 3.0e-94 349.4 301 68.4
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 3.9e-94 349.0 298 65.1
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.1e-93 347.4 300 66.7
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.5e-93 346.3 301 63.1
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 3.0e-86 322.8 305 59.7
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 8.7e-86 321.2 247 70.0
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 3.4e-82 309.3 241 68.0
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.2e-79 300.8 308 56.2
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.7e-77 292.0 301 59.8
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 9.7e-77 291.2 311 56.3
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 6.3e-76 288.5 224 73.2
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 6.3e-76 288.5 215 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.2e-66 257.7 300 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.5e-66 255.8 300 56.7
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.1e-64 251.1 300 55.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 7.2e-64 248.4 198 71.2
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 4.0e-62 242.7 221 68.8
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 8.8e-62 241.5 309 52.8
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 8.8e-62 241.5 241 62.2
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 2.9e-57 226.5 297 54.5
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.4e-46 191.0 128 78.9
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 3.0e-46 189.9 323 44.0
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 2.8e-44 183.3 258 47.3
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 4.5e-42 176.0 320 39.7
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.0e-41 174.9 299 43.5
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 8.6e-41 171.8 296 38.9
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.7e-36 156.4 126 62.7
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 4.3e-32 142.9 130 60.8
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 1.0e-30 138.3 94 77.7
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.8e-29 132.5 86 81.4
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 1.6e-26 124.4 129 55.8
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 7.8e-26 122.1 88 71.6
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 8.6e-25 118.6 208 37.5
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 2.0e-21 107.5 211 36.5
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 2.2e-20 104.0 165 41.8
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.9e-19 100.9 71 76.1
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.1e-19 99.8 176 42.6
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 7.1e-19 99.0 61 82.0
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 9.2e-19 98.6 169 42.6
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 9.2e-19 98.6 169 42.6
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 9.2e-19 98.6 169 42.6
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 4.6e-18 96.3 65 78.5
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 5.6e-16 89.4 72 65.3
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 1.1e-14 85.1 83 61.4
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 2.3e-14 84.0 72 61.1
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 2.3e-14 84.0 80 56.2
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 3.9e-09 66.6 113 40.7
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 4.3e-08 63.2 40 72.5
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.6e-08 62.8 95 42.1
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.8e-06 57.8 59 57.6


User provided reference genes

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