Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 3233.0 1680 100.0
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2862.4 1682 87.3
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2699.5 1703 82.8
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2599.7 1686 79.7
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2562.3 1412 90.2
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2556.6 1701 76.7
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2461.4 1772 73.5
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2389.8 1684 73.4
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2380.5 1695 72.2
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2379.4 1694 72.9
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2374.7 1684 72.4
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2373.6 1690 72.8
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2360.1 1712 71.4
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2358.2 1689 71.6
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2351.6 1697 71.5
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2349.7 1688 72.2
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2347.8 1714 71.5
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2345.1 1696 71.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2334.7 1642 72.8
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2332.8 1711 70.6
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2329.7 1712 70.9
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2327.4 1677 71.1
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2313.1 1712 70.5
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2313.1 1711 69.5
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2310.8 1712 71.3
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2310.0 1711 69.4
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2309.3 1702 70.6
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2307.7 1703 70.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2307.7 1697 70.1
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2295.0 1701 68.7
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2289.2 1290 84.9
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2288.1 1691 70.1
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2284.2 1294 84.6
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2282.3 1707 68.7
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2276.9 1640 71.0
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2270.7 1693 68.7
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2268.0 1702 70.2
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2267.3 1703 70.1
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2266.1 1713 69.1
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2261.9 1694 69.3
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2261.9 1713 68.5
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2259.2 1693 68.9
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2250.7 1694 68.1
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2234.1 1705 68.0
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2227.6 1694 68.4
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2208.3 1710 66.9
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2184.8 1746 67.2
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2179.1 1653 67.4
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2178.7 1683 65.8
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2177.1 1689 67.0
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2170.2 1646 67.3
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2164.8 1661 66.3
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2161.0 1701 65.7
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2154.4 1731 66.7
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2150.6 1702 67.5
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2147.9 1704 65.3
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2144.8 1710 65.6
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2143.2 1739 64.6
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2142.5 1723 64.9
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2139.8 1679 66.0
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2139.4 1695 65.5
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2138.6 1709 65.1
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2138.2 1699 66.2
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2136.7 1706 65.5
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2134.4 1679 65.5
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2129.8 1706 65.5
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2125.1 1853 61.9
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2124.4 1708 65.2
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2123.6 1704 65.0
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2121.3 1704 64.6
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2120.1 1690 65.6
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2119.0 1703 65.1
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2105.9 1727 64.1
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2105.5 1692 64.7
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2102.8 1684 64.3
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2087.0 1694 64.0
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2078.9 1712 63.3
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2035.4 1648 64.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2022.7 1696 62.1
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2021.5 1724 61.7
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1999.9 1624 64.0
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1984.1 2121 53.3
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1979.5 1686 61.3
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1943.7 1683 61.2
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1897.5 1681 60.8
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1887.1 1714 58.3
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1869.4 1633 59.0
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1869.0 1460 66.3
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1859.7 1160 76.7
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1850.1 1043 85.4
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1816.2 1674 58.7
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1774.2 1090 86.8
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1759.2 1793 55.5
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1660.2 1631 54.0
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1658.7 1704 57.2
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1643.6 1404 63.3
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1638.6 1711 51.4
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1631.7 1703 52.9
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1622.4 1699 51.5
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1574.7 1642 50.8
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1482.6 936 75.1
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1460.3 1084 64.5
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1375.9 1116 66.5
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1310.4 1354 56.0
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1293.9 1146 64.1
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1113.2 910 60.4
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1097.0 600 89.2
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1083.6 908 66.7
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 3.2e-288 996.1 742 65.4
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 4.5e-282 975.7 616 76.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.7e-261 905.6 682 61.9
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.7e-242 843.6 552 73.6
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.7e-236 824.3 795 58.9
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 2.6e-213 747.3 1514 34.9
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 1.4e-195 688.3 847 41.6
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 5.1e-185 653.3 565 70.4
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 2.6e-181 641.0 427 71.9
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 2.9e-156 557.8 376 72.3
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 4.4e-152 543.9 329 79.3
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.3e-140 505.8 899 35.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 5.8e-120 437.2 697 38.3
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 1.9e-110 405.6 585 53.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 6.0e-109 400.6 428 45.3
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 7.8e-109 400.2 240 78.3
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 4.7e-106 391.0 336 62.5
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 1.9e-102 379.0 246 68.3
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.3e-99 367.9 476 57.4
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 3.6e-98 364.8 175 100.0
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 6.8e-97 360.5 373 66.2
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.1e-89 335.1 213 71.4
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.3e-76 293.1 190 75.8
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.3e-68 266.5 177 66.1
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 9.6e-67 260.4 414 51.9
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 3.7e-58 231.9 152 70.4
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.0e-47 197.2 207 44.4
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.8e-44 186.4 115 75.7
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 5.9e-40 171.4 99 83.8
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 5.5e-38 164.9 128 59.4
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.2e-37 163.7 128 57.0
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 3.6e-37 162.2 170 50.6
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 4.5e-32 145.2 92 78.3
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 2.0e-27 129.8 205 41.5
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 2.0e-27 129.8 123 50.4
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 9.1e-25 120.9 83 68.7
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 2.7e-24 119.4 88 63.6
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 4.5e-24 118.6 73 78.1
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 7.7e-24 117.9 226 42.9
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.8e-23 115.5 61 86.9
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.1e-22 114.0 63 87.3
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.2e-21 110.5 100 54.0
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 8.0e-21 107.8 297 38.7
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 8.0e-21 107.8 215 34.9
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 8.8e-20 104.4 75 72.0
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 9.2e-17 94.4 139 41.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 2.0e-16 93.2 57 78.9
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 1.9e-14 86.7 76 51.3
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 5.6e-14 85.1 49 73.5
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 2.8e-13 82.8 50 80.0
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 3.6e-13 82.4 45 75.6
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.3e-12 79.7 58 58.6
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 5.2e-12 78.6 50 76.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.5e-11 77.0 57 64.9
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.3e-10 73.9 274 36.9
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.9e-10 72.8 94 43.6
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 6.4e-10 71.6 88 51.1
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 8.3e-10 71.2 56 58.9
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 7.0e-09 68.2 111 44.1
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.6e-08 67.0 40 77.5
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 1.3e-07 63.9 35 82.9
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 6.6e-07 61.6 165 29.7
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 8.6e-07 61.2 68 45.6
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 7.3e-06 58.2 126 31.7


User provided reference genes

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