Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02495_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 1.2e-80 303.1 156 100.0
Psat0s2644g0040 Pisum sativum HOM05D000452 ORTHO05D000647 7.9e-56 220.7 145 77.2
Medtr2g449780 Medicago truncatula HOM05D000452 ORTHO05D000647 3.0e-55 218.8 145 77.2
TPR.G31931 Trifolium pratense HOM05D000452 ORTHO05D000647 6.2e-53 211.1 144 77.8
Lj6g0026902 Lotus japonicus HOM05D000452 ORTHO05D000647 1.3e-47 193.4 147 70.7
Lalb_Chr12g0198541 Lupinus albus HOM05D000452 ORTHO05D000647 1.8e-47 193.0 145 67.6
Lj4g0005431 Lotus japonicus HOM05D000452 ORTHO05D000647 4.5e-43 178.3 145 65.5
Medtr4g116840 Medicago truncatula HOM05D000452 ORTHO05D000647 7.6e-43 177.6 145 63.4
VMungo1215G2021 Vigna mungo HOM05D000452 ORTHO05D000647 7.6e-43 177.6 145 66.9
Glyma.13G156600 Glycine max HOM05D000452 ORTHO05D000647 1.7e-42 176.4 145 64.8
Glyma.17G104200 Glycine max HOM05D000452 ORTHO05D000647 4.9e-42 174.9 145 64.1
MELO3C004450.2 Cucumis melo HOM05D000452 ORTHO05D000647 1.9e-41 172.9 143 59.4
CsaV3_2G003480 Cucumis sativus L. HOM05D000452 ORTHO05D000647 5.5e-41 171.4 143 60.1
Psat4g034120 Pisum sativum HOM05D000452 ORTHO05D000647 1.2e-40 170.2 145 62.1
ClCG11G003630 Citrullus lanatus HOM05D000452 ORTHO05D000647 1.6e-40 169.9 143 59.4
Manes.06G040600 Manihot esculenta HOM05D000452 ORTHO05D000647 1.0e-39 167.2 145 60.0
TPR.G15783 Trifolium pratense HOM05D000452 ORTHO05D000647 1.8e-39 166.4 145 60.7
CiPaw.15G179200 Carya illinoinensis HOM05D000452 ORTHO05D000647 5.1e-39 164.9 145 57.9
Ca_21606_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 1.1e-38 163.7 145 60.7
Ca_21629_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 1.1e-38 163.7 145 60.7
Haze_19302 Corylus avellana HOM05D000452 ORTHO05D000647 2.5e-38 162.5 147 57.1
Glyma.15G208700 Glycine max HOM05D000452 ORTHO05D000647 3.3e-38 162.2 145 62.8
Gohir.A07G025000 Gossypium hirsutum HOM05D000452 ORTHO05D000647 4.3e-38 161.8 145 53.8
Dinv42903 Davidia involucrata HOM05D000452 ORTHO05D000647 9.7e-38 160.6 146 56.2
Dinv43198 Davidia involucrata HOM05D000452 ORTHO05D000647 9.7e-38 160.6 146 56.2
Phvul.009G208400 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 3.7e-37 158.7 146 58.2
Cfa020873 Carpinus fangiana HOM05D000452 ORTHO05D000647 1.1e-36 157.1 148 56.1
arahy.Tifrunner.gnm1.ann1.G6MTT1 Arachis hypogaea HOM05D000452 ORTHO05D000647 1.4e-36 156.8 146 60.3
arahy.Tifrunner.gnm1.ann1.P5Q0L9 Arachis hypogaea HOM05D000452 ORTHO05D000647 1.4e-36 156.8 146 60.3
Prupe.2G038700 Prunus persica HOM05D000452 ORTHO05D000647 1.4e-36 156.8 145 55.9
FAN01G1180 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.8e-36 156.4 146 55.5
CiPaw.16G116900 Carya illinoinensis HOM05D000452 ORTHO05D000647 6.9e-36 154.5 146 54.8
TAR383G0911 Trochodendron aralioides HOM05D000452 ORTHO05D000647 6.9e-36 154.5 144 53.5
QL02p091578 Quercus lobata HOM05D000452 ORTHO05D000647 1.5e-35 153.3 146 56.8
GSVIVG01001043001 Vitis vinifera HOM05D000452 ORTHO05D000647 1.5e-35 153.3 153 52.3
FAN10G0162 Fragaria x ananassa HOM05D000452 ORTHO05D000647 2.6e-35 152.5 146 54.1
FAN03G2109 Fragaria x ananassa HOM05D000452 ORTHO05D000647 3.4e-35 152.1 146 54.1
Sed0007575 Sechium edule HOM05D000452 ORTHO05D000647 1.0e-34 150.6 145 54.5
CSS0047494 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 1.7e-34 149.8 145 53.1
Thecc.09G037200 Theobroma cacao HOM05D000452 ORTHO05D000647 1.7e-34 149.8 145 53.1
Gohir.D07G028500 Gossypium hirsutum HOM05D000452 ORTHO05D000647 2.9e-34 149.1 145 52.4
Gorai.001G029800 Gossypium raimondii HOM05D000452 ORTHO05D000647 2.9e-34 149.1 145 52.4
CSS0048847 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 3.8e-34 148.7 145 53.1
Dinv41415 Davidia involucrata HOM05D000452 ORTHO05D000647 3.8e-34 148.7 146 55.5
Hma1.2p1_0182F.1_g080630 Hydrangea macrophylla HOM05D000452 ORTHO05D000647 3.8e-34 148.7 146 53.4
Manes.14G140000 Manihot esculenta HOM05D000452 ORTHO05D000647 3.8e-34 148.7 145 53.8
Nitab4.5_0004050g0030 Nicotiana tabacum HOM05D000452 ORTHO05D000647 3.8e-34 148.7 146 52.1
Eucgr.C04062 Eucalyptus grandis HOM05D000452 ORTHO05D000647 5.0e-34 148.3 145 51.7
Cc06_g07340 Coffea canephora HOM05D000452 ORTHO05D000647 8.5e-34 147.5 145 51.0
Nitab4.5_0001671g0070 Nicotiana tabacum HOM05D000452 ORTHO05D000647 8.5e-34 147.5 146 50.7
COL.COLO4_18731 Corchorus olitorius HOM05D000452 ORTHO05D000647 2.5e-33 146.0 155 49.7
Peaxi162Scf00347g00326 Petunia axillaris HOM05D000452 ORTHO05D000647 3.2e-33 145.6 146 49.3
Atru.chr7.196 Acer truncatum HOM05D000452 ORTHO05D000647 4.2e-33 145.2 146 52.7
Duzib150G1465 Durio zibethinus HOM05D000452 ORTHO05D000647 9.4e-33 144.1 145 49.0
Prupe.7G253100 Prunus persica HOM05D000452 ORTHO05D000647 9.4e-33 144.1 145 53.1
Ciclev10007533m.g Citrus clementina HOM05D000452 ORTHO05D000647 1.2e-32 143.7 146 52.7
RcHm_v2.0_Chr2g0086461 Rosa chinensis HOM05D000452 ORTHO05D000647 2.7e-32 142.5 146 51.4
Nitab4.5_0000416g0020 Nicotiana tabacum HOM05D000452 ORTHO05D000647 4.6e-32 141.7 136 52.9
Sabra06G0145500 Salix brachista HOM05D000452 ORTHO05D000647 6.1e-32 141.4 146 53.4
CAN.G520.40 Capsicum annuum HOM05D000452 ORTHO05D000647 7.9e-32 141.0 146 47.9
Lj9C710G10 Lonicera japonica HOM05D000452 ORTHO05D000647 7.9e-32 141.0 146 51.4
RcHm_v2.0_Chr1g0325641 Rosa chinensis HOM05D000452 ORTHO05D000647 7.9e-32 141.0 146 51.4
Sc08g0004960 Simmondsia chinensis HOM05D000452 ORTHO05D000647 1.0e-31 140.6 145 53.1
Oeu050463.2 Olea europaea HOM05D000452 ORTHO05D000647 3.9e-31 138.7 145 50.3
VMungo1309G0535 Vigna mungo HOM05D000452 ORTHO05D000647 3.9e-31 138.7 146 55.5
MD15G1157900 Malus domestica HOM05D000452 ORTHO05D000647 8.8e-31 137.5 146 52.1
Nn2g12264 Nelumbo nucifera HOM05D000452 ORTHO05D000647 1.1e-30 137.1 145 51.0
Potri.018G113100 Populus trichocarpa HOM05D000452 ORTHO05D000647 1.5e-30 136.7 145 49.7
MBI15_g29777_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D000647 2.0e-30 136.3 143 51.0
HanXRQChr05g0141531 Helianthus annuus HOM05D000452 ORTHO05D000647 2.5e-30 136.0 148 49.3
Rhsim01G0049500 Rhododendron simsii HOM05D000452 ORTHO05D000647 4.3e-30 135.2 145 47.6
Lsat_1_v5_gn_8_60041 Lactuca sativa HOM05D000452 ORTHO05D000647 5.7e-30 134.8 149 47.7
HanXRQChr10g0281641 Helianthus annuus HOM05D000452 ORTHO05D000647 9.7e-30 134.0 149 49.7
MD02G1283900 Malus domestica HOM05D000452 ORTHO05D000647 1.3e-29 133.7 145 50.3
FAN23G1964 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.7e-29 133.3 146 51.4
MBI15_g39628_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D000647 1.7e-29 133.3 132 53.8
Nn8g39750 Nelumbo nucifera HOM05D000452 ORTHO05D000647 2.8e-29 132.5 144 48.6
Sabra18G0096200 Salix brachista HOM05D000452 ORTHO05D000647 4.8e-29 131.7 146 48.6
Solyc07g005000.3 Solanum lycopersicum HOM05D000452 ORTHO05D000647 6.3e-29 131.3 146 46.6
Sopen07g001110 Solanum pennellii HOM05D000452 ORTHO05D000647 6.3e-29 131.3 146 46.6
ECA236G0118 Erigeron canadensis HOM05D000452 ORTHO05D000647 8.2e-29 131.0 147 48.3
FvH4_7g03330 Fragaria vesca HOM05D000452 ORTHO05D000647 1.4e-28 130.2 146 48.6
FAN06G1990 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.4e-28 130.2 146 48.6
TWI34G1684 Tripterygium wilfordii HOM05D000452 ORTHO05D000647 4.1e-28 128.6 116 61.2
Aqoxy7G03511 Aquilegia oxysepala HOM05D000452 ORTHO05D000647 1.2e-27 127.1 147 49.0
vmacro21878 Vaccinium macrocarpon HOM05D000452 ORTHO05D000647 2.6e-27 125.9 154 46.1
arahy.Tifrunner.gnm1.ann1.I6E49E Arachis hypogaea HOM05D000452 ORTHO05D000647 1.3e-26 123.6 145 47.6
ATR0629G037 Amborella trichopoda HOM05D000452 ORTHO05D000647 2.2e-26 122.9 150 46.0
DCAR_014828 Daucus carota HOM05D000452 ORTHO05D000647 2.2e-26 122.9 147 42.9
Migut.K00364 Erythranthe guttata HOM05D000452 ORTHO05D000647 2.9e-26 122.5 146 46.6
CANSAT11G1350 Cannabis sativa HOM05D000452 ORTHO05D000647 6.5e-26 121.3 149 46.3
MSTRG.26311 Avicennia marina HOM05D000452 ORTHO05D000647 8.5e-26 120.9 145 45.5
SHI03232 Sapria himalayana HOM05D000452 ORTHO05D000647 1.1e-25 120.6 145 44.8
HPP92_018516 Vanilla planifolia HOM05D000452 ORTHO05D000647 1.1e-25 120.6 144 45.1
THA.LOC104815402 Tarenaya hassleriana HOM05D000452 ORTHO05D000647 1.2e-24 117.1 145 46.2
PSO063G6842 Papaver somniferum HOM05D000452 ORTHO05D000647 2.7e-24 115.9 147 43.5
SGA_v2.0_scaffold183G39856 Striga asiatica HOM05D000452 ORTHO05D000647 2.7e-24 115.9 145 42.8
FvH4_1g01530 Fragaria vesca HOM05D000452 ORTHO05D000647 6.1e-24 114.8 146 45.9
PSO421G0133 Papaver somniferum HOM05D000452 ORTHO05D000647 7.9e-24 114.4 147 42.9
FAN28G0115 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.8e-23 113.2 153 45.1
Sed0003353 Sechium edule HOM05D000452 ORTHO05D000647 2.3e-23 112.8 144 47.2
FAN19G0353 Fragaria x ananassa HOM05D000452 ORTHO05D000647 3.0e-23 112.5 154 45.5
FAN26G2398 Fragaria x ananassa HOM05D000452 ORTHO05D000647 3.0e-23 112.5 154 45.5
Carub.0007s3101 Capsella rubella HOM05D000452 ORTHO05D000647 6.7e-23 111.3 145 42.8
Zm00001eb041240 Zea mays HOM05D000452 ORTHO05D000647 8.8e-23 110.9 144 43.1
Os08g0439100 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D000647 1.1e-22 110.5 143 42.0
AT5G35180 Arabidopsis thaliana HOM05D000452 ORTHO05D000647 2.6e-22 109.4 147 42.2
CARHR217280 Cardamine hirsuta HOM05D000452 ORTHO05D000647 2.6e-22 109.4 145 42.8
Sp7g07190 Schrenkiella parvula HOM05D000452 ORTHO05D000647 3.3e-22 109.0 145 42.8
BcaC07g37673 Brassica carinata HOM05D000452 ORTHO05D000647 7.4e-22 107.8 145 43.4
BolC8t48044H Brassica oleracea HOM05D000452 ORTHO05D000647 7.4e-22 107.8 145 43.4
Thhalv10003438m.g Eutrema salsugineum HOM05D000452 ORTHO05D000647 7.4e-22 107.8 150 42.0
A08p09630 Brassica napus HOM05D000452 ORTHO05D000647 1.3e-21 107.1 145 43.4
BraA08t32960Z Brassica rapa HOM05D000452 ORTHO05D000647 1.3e-21 107.1 145 43.4
BcaB04g18057 Brassica carinata HOM05D000452 ORTHO05D000647 2.2e-21 106.3 145 42.8
Aa31LG9G6040 Aethionema arabicum HOM05D000452 ORTHO05D000647 1.1e-20 104.0 145 39.3
unitig_736.g22222 Utricularia gibba HOM05D000452 ORTHO05D000647 1.1e-20 104.0 144 43.8
AL7G44030 Arabidopsis lyrata HOM05D000452 ORTHO05D000647 1.8e-20 103.2 147 41.5
Lalb_Chr08g0233851 Lupinus albus HOM05D000452 ORTHO05D000647 5.3e-20 101.7 70 68.6
EL10Ac8g18831 Beta vulgaris HOM05D000452 ORTHO05D000647 4.5e-19 98.6 145 44.1
Phvul.003G175600 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 1.7e-18 96.7 87 60.9
Gorai.009G053100 Gossypium raimondii HOM05D000452 ORTHO05D000647 6.5e-18 94.7 147 37.4
AUR62042022 Chenopodium quinoa HOM05D000452 ORTHO05D000647 1.9e-17 93.2 145 40.7
Lalb_Chr08g0233861 Lupinus albus HOM05D000452 ORTHO05D000647 9.4e-17 90.9 89 62.9
Lalb_Chr13g0301151 Lupinus albus HOM05D000452 ORTHO05D000647 2.1e-16 89.7 61 68.9
Gohir.A05G049600 Gossypium hirsutum HOM05D000452 ORTHO05D000647 5.2e-15 85.1 147 35.4
SEGI_01627 Sequoiadendron giganteum HOM05D000452 ORTHO05D000647 5.7e-14 81.6 149 36.2
Lalb_Chr13g0301161 Lupinus albus HOM05D000452 ORTHO05D000647 1.7e-13 80.1 87 58.6
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 3.1e-12 75.9 115 40.0
Lsat_1_v5_gn_7_47401 Lactuca sativa HOM05D000452 ORTHO05D000647 7.0e-12 74.7 126 37.3
HanXRQChr09g0243291 Helianthus annuus HOM05D000452 ORTHO05D000647 5.9e-11 71.6 126 42.9
SHI24349 Sapria himalayana HOM05D000452 ORTHO05D000647 5.9e-11 71.6 104 42.3
Mapoly0103s0001 Marchantia polymorpha HOM05D000452 ORTHO05D000647 1.0e-10 70.9 129 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1413 Anthoceros agrestis HOM05D000452 ORTHO05D000647 1.3e-10 70.5 128 35.2
Pp3c12_9430 Physcomitrium patens HOM05D000452 ORTHO05D000647 1.6e-08 63.5 135 31.9
Pp3c3_27440 Physcomitrium patens HOM05D000452 ORTHO05D000647 2.1e-08 63.2 133 33.8
Gohir.D05G051400 Gossypium hirsutum HOM05D000452 ORTHO05D000647 4.7e-08 62.0 145 30.3
Pp3c10_12000 Physcomitrium patens HOM05D000452 ORTHO05D000647 1.0e-07 60.8 131 33.6
CBR_g8993 Chara braunii HOM05D000452 ORTHO05D000647 1.4e-07 60.5 115 34.8
Cpa.g.sc46.100 Carica papaya HOM05D000452 ORTHO05D000647 2.3e-07 59.7 85 42.4
SMO140G0087 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 7.5e-06 54.7 117 30.8


User provided reference genes

Program Settings