Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02483_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 5.5e-80 300.8 144 100.0
Psat0s2644g0040 Pisum sativum HOM05D000452 ORTHO05D000647 1.6e-31 139.8 76 86.8
TPR.G31931 Trifolium pratense HOM05D000452 ORTHO05D000647 4.7e-31 138.3 76 85.5
Medtr2g449780 Medicago truncatula HOM05D000452 ORTHO05D000647 8.9e-30 134.0 66 92.4
Lalb_Chr08g0233861 Lupinus albus HOM05D000452 ORTHO05D000647 2.0e-29 132.9 66 90.9
Glyma.15G208700 Glycine max HOM05D000452 ORTHO05D000647 2.6e-29 132.5 66 89.4
Rhsim01G0049500 Rhododendron simsii HOM05D000452 ORTHO05D000647 3.4e-29 132.1 101 61.4
Lj6g0026902 Lotus japonicus HOM05D000452 ORTHO05D000647 4.4e-29 131.7 65 92.3
VMungo1309G0535 Vigna mungo HOM05D000452 ORTHO05D000647 8.4e-28 127.5 86 73.3
Lalb_Chr12g0198541 Lupinus albus HOM05D000452 ORTHO05D000647 2.4e-27 125.9 79 75.9
Phvul.009G208300 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 3.2e-27 125.6 65 87.7
TPR.G15783 Trifolium pratense HOM05D000452 ORTHO05D000647 4.1e-27 125.2 79 74.7
arahy.Tifrunner.gnm1.ann1.G6MTT1 Arachis hypogaea HOM05D000452 ORTHO05D000647 7.1e-27 124.4 66 84.8
arahy.Tifrunner.gnm1.ann1.P5Q0L9 Arachis hypogaea HOM05D000452 ORTHO05D000647 7.1e-27 124.4 66 84.8
Medtr4g116840 Medicago truncatula HOM05D000452 ORTHO05D000647 1.2e-26 123.6 79 73.4
Ca_21606_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 1.6e-26 123.2 79 72.2
Ca_21629_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 1.6e-26 123.2 79 72.2
Lj4g0005431 Lotus japonicus HOM05D000452 ORTHO05D000647 2.7e-26 122.5 65 86.2
Atru.chr7.196 Acer truncatum HOM05D000452 ORTHO05D000647 1.7e-25 119.8 68 77.9
Psat4g034120 Pisum sativum HOM05D000452 ORTHO05D000647 3.0e-25 119.0 79 70.9
TWI34G1684 Tripterygium wilfordii HOM05D000452 ORTHO05D000647 3.9e-25 118.6 68 76.5
Lalb_Chr13g0301161 Lupinus albus HOM05D000452 ORTHO05D000647 5.1e-25 118.2 65 83.1
Ciclev10007533m.g Citrus clementina HOM05D000452 ORTHO05D000647 6.6e-25 117.9 68 76.5
Haze_19303 Corylus avellana HOM05D000452 ORTHO05D000647 1.5e-24 116.7 72 70.8
Glyma.13G156600 Glycine max HOM05D000452 ORTHO05D000647 1.5e-24 116.7 66 78.8
Cfa020873 Carpinus fangiana HOM05D000452 ORTHO05D000647 1.9e-24 116.3 68 75.0
VMungo1215G2021 Vigna mungo HOM05D000452 ORTHO05D000647 2.5e-24 115.9 66 80.3
CiPaw.15G179200 Carya illinoinensis HOM05D000452 ORTHO05D000647 3.3e-24 115.5 88 62.5
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 4.3e-24 115.2 66 75.8
Gohir.D07G028500 Gossypium hirsutum HOM05D000452 ORTHO05D000647 7.3e-24 114.4 68 72.1
Gorai.001G029800 Gossypium raimondii HOM05D000452 ORTHO05D000647 7.3e-24 114.4 68 72.1
Dinv41415 Davidia involucrata HOM05D000452 ORTHO05D000647 1.2e-23 113.6 77 66.2
Duzib150G1465 Durio zibethinus HOM05D000452 ORTHO05D000647 1.2e-23 113.6 68 72.1
vmacro21878 Vaccinium macrocarpon HOM05D000452 ORTHO05D000647 1.2e-23 113.6 68 72.1
Glyma.17G104200 Glycine max HOM05D000452 ORTHO05D000647 1.6e-23 113.2 66 77.3
Gohir.A07G025000 Gossypium hirsutum HOM05D000452 ORTHO05D000647 1.6e-23 113.2 68 70.6
COL.COLO4_18731 Corchorus olitorius HOM05D000452 ORTHO05D000647 2.8e-23 112.5 68 70.6
Hma1.2p1_0182F.1_g080630 Hydrangea macrophylla HOM05D000452 ORTHO05D000647 4.7e-23 111.7 77 66.2
Manes.06G040600 Manihot esculenta HOM05D000452 ORTHO05D000647 4.7e-23 111.7 66 74.2
TAR383G0911 Trochodendron aralioides HOM05D000452 ORTHO05D000647 4.7e-23 111.7 68 75.0
QL02p091578 Quercus lobata HOM05D000452 ORTHO05D000647 6.2e-23 111.3 68 72.1
Phvul.003G175600 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 1.1e-22 110.5 68 72.1
RcHm_v2.0_Chr1g0325641 Rosa chinensis HOM05D000452 ORTHO05D000647 1.1e-22 110.5 94 55.3
Thecc.09G037200 Theobroma cacao HOM05D000452 ORTHO05D000647 1.1e-22 110.5 66 72.7
Eucgr.C04062 Eucalyptus grandis HOM05D000452 ORTHO05D000647 1.8e-22 109.8 64 75.0
Dinv42903 Davidia involucrata HOM05D000452 ORTHO05D000647 5.2e-22 108.2 68 70.6
Dinv43198 Davidia involucrata HOM05D000452 ORTHO05D000647 5.2e-22 108.2 68 70.6
MD15G1157900 Malus domestica HOM05D000452 ORTHO05D000647 6.9e-22 107.8 68 67.6
GSVIVG01001043001 Vitis vinifera HOM05D000452 ORTHO05D000647 6.9e-22 107.8 65 75.4
CANSAT11G1350 Cannabis sativa HOM05D000452 ORTHO05D000647 9.0e-22 107.5 68 69.1
FAN10G0162 Fragaria x ananassa HOM05D000452 ORTHO05D000647 9.0e-22 107.5 94 53.2
Lj9C710G10 Lonicera japonica HOM05D000452 ORTHO05D000647 9.0e-22 107.5 68 67.6
Sc08g0004960 Simmondsia chinensis HOM05D000452 ORTHO05D000647 9.0e-22 107.5 85 62.4
arahy.Tifrunner.gnm1.ann1.I6E49E Arachis hypogaea HOM05D000452 ORTHO05D000647 1.2e-21 107.1 64 73.4
Manes.14G140000 Manihot esculenta HOM05D000452 ORTHO05D000647 1.2e-21 107.1 68 67.6
FvH4_7g03330 Fragaria vesca HOM05D000452 ORTHO05D000647 1.5e-21 106.7 94 53.2
FAN06G1990 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.5e-21 106.7 94 53.2
ClCG11G003630 Citrullus lanatus HOM05D000452 ORTHO05D000647 2.0e-21 106.3 112 50.0
Nn8g39750 Nelumbo nucifera HOM05D000452 ORTHO05D000647 2.6e-21 105.9 64 73.4
Potri.018G113100 Populus trichocarpa HOM05D000452 ORTHO05D000647 2.6e-21 105.9 68 67.6
FAN01G1180 Fragaria x ananassa HOM05D000452 ORTHO05D000647 3.4e-21 105.5 94 52.1
Prupe.2G038700 Prunus persica HOM05D000452 ORTHO05D000647 3.4e-21 105.5 76 60.5
Sabra18G0096200 Salix brachista HOM05D000452 ORTHO05D000647 4.4e-21 105.1 68 67.6
PSO421G0133 Papaver somniferum HOM05D000452 ORTHO05D000647 5.8e-21 104.8 76 60.5
CiPaw.16G116900 Carya illinoinensis HOM05D000452 ORTHO05D000647 7.6e-21 104.4 68 67.6
SGA_v2.0_scaffold183G39856 Striga asiatica HOM05D000452 ORTHO05D000647 7.6e-21 104.4 89 55.1
FvH4_1g01530 Fragaria vesca HOM05D000452 ORTHO05D000647 9.9e-21 104.0 76 57.9
FAN19G0353 Fragaria x ananassa HOM05D000452 ORTHO05D000647 9.9e-21 104.0 76 57.9
FAN23G1964 Fragaria x ananassa HOM05D000452 ORTHO05D000647 9.9e-21 104.0 76 57.9
FAN28G0115 Fragaria x ananassa HOM05D000452 ORTHO05D000647 9.9e-21 104.0 76 57.9
Migut.K00364 Erythranthe guttata HOM05D000452 ORTHO05D000647 1.3e-20 103.6 89 55.1
Gohir.A05G049600 Gossypium hirsutum HOM05D000452 ORTHO05D000647 1.3e-20 103.6 65 72.3
Gohir.D05G051400 Gossypium hirsutum HOM05D000452 ORTHO05D000647 1.3e-20 103.6 65 72.3
Gorai.009G053100 Gossypium raimondii HOM05D000452 ORTHO05D000647 1.3e-20 103.6 65 72.3
MD02G1283900 Malus domestica HOM05D000452 ORTHO05D000647 1.3e-20 103.6 76 59.2
THA.LOC104815402 Tarenaya hassleriana HOM05D000452 ORTHO05D000647 1.3e-20 103.6 91 54.9
MBI14_g13651_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D000647 1.7e-20 103.2 69 63.8
PSO063G6842 Papaver somniferum HOM05D000452 ORTHO05D000647 1.7e-20 103.2 76 59.2
ATR0629G037 Amborella trichopoda HOM05D000452 ORTHO05D000647 2.2e-20 102.8 75 57.3
RcHm_v2.0_Chr2g0086461 Rosa chinensis HOM05D000452 ORTHO05D000647 2.2e-20 102.8 76 57.9
FAN03G2109 Fragaria x ananassa HOM05D000452 ORTHO05D000647 3.8e-20 102.1 94 51.1
MELO3C004450.2 Cucumis melo HOM05D000452 ORTHO05D000647 6.4e-20 101.3 88 54.5
CsaV3_2G003480 Cucumis sativus L. HOM05D000452 ORTHO05D000647 6.4e-20 101.3 88 55.7
Nn2g12264 Nelumbo nucifera HOM05D000452 ORTHO05D000647 6.4e-20 101.3 66 68.2
Oeu050463.2 Olea europaea HOM05D000452 ORTHO05D000647 6.4e-20 101.3 86 54.7
Cc06_g07340 Coffea canephora HOM05D000452 ORTHO05D000647 8.4e-20 100.9 89 53.9
Prupe.7G253100 Prunus persica HOM05D000452 ORTHO05D000647 8.4e-20 100.9 84 57.1
Aqoxy7G03511 Aquilegia oxysepala HOM05D000452 ORTHO05D000647 1.1e-19 100.5 68 64.7
HanXRQChr10g0281641 Helianthus annuus HOM05D000452 ORTHO05D000647 1.9e-19 99.8 96 51.0
Os08g0439100 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D000647 1.9e-19 99.8 75 61.3
FAN26G2398 Fragaria x ananassa HOM05D000452 ORTHO05D000647 2.4e-19 99.4 76 57.9
EL10Ac8g18831 Beta vulgaris HOM05D000452 ORTHO05D000647 3.2e-19 99.0 67 62.7
CSS0047494 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 3.2e-19 99.0 76 56.6
Aa31LG9G6040 Aethionema arabicum HOM05D000452 ORTHO05D000647 4.2e-19 98.6 65 63.1
Sabra06G0144600 Salix brachista HOM05D000452 ORTHO05D000647 7.1e-19 97.8 68 63.2
Sed0007575 Sechium edule HOM05D000452 ORTHO05D000647 7.1e-19 97.8 96 51.0
unitig_736.g22222 Utricularia gibba HOM05D000452 ORTHO05D000647 7.1e-19 97.8 78 52.6
Lsat_1_v5_gn_8_60041 Lactuca sativa HOM05D000452 ORTHO05D000647 9.3e-19 97.4 76 59.2
Carub.0007s3101 Capsella rubella HOM05D000452 ORTHO05D000647 1.2e-18 97.1 65 60.0
Sed0003353 Sechium edule HOM05D000452 ORTHO05D000647 1.2e-18 97.1 68 60.3
CARHR217280 Cardamine hirsuta HOM05D000452 ORTHO05D000647 1.6e-18 96.7 65 60.0
Sp7g07190 Schrenkiella parvula HOM05D000452 ORTHO05D000647 4.6e-18 95.1 65 60.0
SEGI_35613 Sequoiadendron giganteum HOM05D000452 ORTHO05D000647 4.6e-18 95.1 64 64.1
AT5G35180 Arabidopsis thaliana HOM05D000452 ORTHO05D000647 6.0e-18 94.7 65 58.5
Ah.14g078560 Amaranthus hybridus HOM05D000452 ORTHO05D000647 1.0e-17 94.0 63 65.1
MSTRG.26311 Avicennia marina HOM05D000452 ORTHO05D000647 1.3e-17 93.6 72 58.3
AL7G44030 Arabidopsis lyrata HOM05D000452 ORTHO05D000647 1.7e-17 93.2 65 56.9
CSS0048847 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 1.7e-17 93.2 68 63.2
Solyc07g005000.3 Solanum lycopersicum HOM05D000452 ORTHO05D000647 1.7e-17 93.2 85 52.9
Sopen07g001110 Solanum pennellii HOM05D000452 ORTHO05D000647 1.7e-17 93.2 85 52.9
Thhalv10003438m.g Eutrema salsugineum HOM05D000452 ORTHO05D000647 2.3e-17 92.8 65 58.5
MD07G1049800 Malus domestica HOM05D000452 ORTHO05D000647 3.0e-17 92.4 74 56.8
BcaB04g18057 Brassica carinata HOM05D000452 ORTHO05D000647 5.1e-17 91.7 65 56.9
BcaC07g37673 Brassica carinata HOM05D000452 ORTHO05D000647 5.1e-17 91.7 65 56.9
A08p09630 Brassica napus HOM05D000452 ORTHO05D000647 5.1e-17 91.7 65 56.9
BolC8t48044H Brassica oleracea HOM05D000452 ORTHO05D000647 5.1e-17 91.7 65 56.9
BraA08t32960Z Brassica rapa HOM05D000452 ORTHO05D000647 5.1e-17 91.7 65 56.9
HPP92_018516 Vanilla planifolia HOM05D000452 ORTHO05D000647 5.1e-17 91.7 66 63.6
HanXRQChr05g0141531 Helianthus annuus HOM05D000452 ORTHO05D000647 6.6e-17 91.3 75 54.7
Peaxi162Scf00347g00326 Petunia axillaris HOM05D000452 ORTHO05D000647 6.6e-17 91.3 85 52.9
Nitab4.5_0001671g0070 Nicotiana tabacum HOM05D000452 ORTHO05D000647 1.5e-16 90.1 64 62.5
CAN.G520.40 Capsicum annuum HOM05D000452 ORTHO05D000647 1.9e-16 89.7 85 50.6
SHI03233 Sapria himalayana HOM05D000452 ORTHO05D000647 2.5e-16 89.4 66 57.6
SMO140G0087 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 3.3e-16 89.0 61 59.0
HanXRQChr09g0243291 Helianthus annuus HOM05D000452 ORTHO05D000647 4.3e-16 88.6 85 50.6
Mapoly0103s0001 Marchantia polymorpha HOM05D000452 ORTHO05D000647 7.3e-16 87.8 64 56.2
SMO367G0695 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 1.3e-15 87.0 87 46.0
Pp3c6_26940 Physcomitrium patens HOM05D000452 ORTHO05D000647 1.6e-15 86.7 86 46.5
AagrBONN_evm.TU.Sc2ySwM_344.1413 Anthoceros agrestis HOM05D000452 ORTHO05D000647 4.8e-15 85.1 97 43.3
Lsat_1_v5_gn_7_47401 Lactuca sativa HOM05D000452 ORTHO05D000647 8.1e-15 84.3 64 56.2
Nitab4.5_0000416g0020 Nicotiana tabacum HOM05D000452 ORTHO05D000647 1.4e-14 83.6 69 58.0
ECA236G0118 Erigeron canadensis HOM05D000452 ORTHO05D000647 1.8e-14 83.2 76 47.4
Pp3c10_12000 Physcomitrium patens HOM05D000452 ORTHO05D000647 1.8e-14 83.2 85 48.2
Pp3c12_9430 Physcomitrium patens HOM05D000452 ORTHO05D000647 5.3e-14 81.6 85 47.1
Pp3c3_27440 Physcomitrium patens HOM05D000452 ORTHO05D000647 2.0e-13 79.7 77 48.1
Nitab4.5_0004050g0030 Nicotiana tabacum HOM05D000452 ORTHO05D000647 5.6e-08 61.6 64 50.0


User provided reference genes

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