Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 2.4e-151 538.9 287 100.0
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 3.1e-98 362.5 259 77.2
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.1e-95 354.0 254 76.0
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.9e-95 353.2 260 74.6
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.1e-92 344.0 256 75.0
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.1e-92 344.0 256 73.0
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.9e-92 343.2 256 72.7
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 2.5e-92 342.8 248 75.8
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 3.9e-85 318.9 250 73.6
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 8.7e-85 317.8 261 70.5
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 9.3e-79 297.7 255 63.9
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 3.3e-76 289.3 254 61.4
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 4.3e-76 288.9 257 61.9
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.3e-75 287.3 260 62.3
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.3e-75 287.3 252 62.7
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.3e-75 287.3 251 62.9
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 2.8e-75 286.2 246 63.0
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 3.7e-75 285.8 251 62.2
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 6.2e-75 285.0 256 63.3
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 8.2e-75 284.6 257 61.9
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 5.3e-74 282.0 255 63.5
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.5e-73 280.4 254 61.8
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 2.6e-73 279.6 255 62.7
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 2.2e-72 276.6 264 61.0
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 2.9e-72 276.2 257 60.3
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.9e-72 276.2 252 61.5
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 6.5e-72 275.0 254 60.6
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 6.5e-72 275.0 264 60.6
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.4e-71 273.9 254 60.2
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.4e-71 273.9 251 61.0
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.9e-71 273.5 257 59.9
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.5e-71 273.1 254 59.4
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 4.2e-71 272.3 255 58.4
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 5.5e-71 271.9 254 60.6
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 5.5e-71 271.9 254 57.5
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 9.3e-71 271.2 245 60.8
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.2e-70 270.8 247 59.9
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.6e-70 270.4 256 59.8
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.7e-70 269.6 257 58.0
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 3.5e-70 269.2 254 58.3
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.6e-70 268.9 252 58.7
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 4.6e-70 268.9 254 59.4
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 4.6e-70 268.9 258 59.3
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.6e-70 268.9 255 56.5
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 1.3e-69 267.3 254 59.1
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 2.3e-69 266.5 256 58.2
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 3.0e-69 266.2 256 58.2
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 6.7e-69 265.0 257 57.6
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 6.7e-69 265.0 256 58.2
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 8.7e-69 264.6 242 61.2
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.5e-68 263.8 254 57.9
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.9e-68 263.5 254 58.3
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.3e-68 262.3 261 57.9
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 5.7e-68 261.9 256 57.4
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 9.7e-68 261.2 260 56.9
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-67 260.8 271 55.0
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.6e-67 260.4 256 57.0
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-66 257.7 258 58.1
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.0e-66 254.6 261 57.1
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 2.0e-65 253.4 249 58.2
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 7.7e-65 251.5 249 56.2
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.7e-65 251.5 261 56.7
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.3e-64 250.8 260 54.2
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 2.2e-64 250.0 256 57.0
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.9e-64 249.6 260 53.8
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 6.5e-64 248.4 254 56.7
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 6.5e-64 248.4 254 56.3
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 8.5e-64 248.1 252 56.3
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 8.5e-64 248.1 267 53.6
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 8.5e-64 248.1 252 54.4
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.9e-63 246.9 255 54.5
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 3.2e-63 246.1 254 54.7
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 3.2e-63 246.1 264 55.3
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 7.2e-63 245.0 254 55.9
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.6e-62 243.8 254 55.5
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.1e-62 243.4 168 75.0
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 2.7e-62 243.0 254 56.3
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 6.1e-62 241.9 266 51.9
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.8e-61 240.4 254 54.7
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 2.3e-61 240.0 254 55.1
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 3.0e-61 239.6 321 46.1
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 3.9e-61 239.2 266 53.0
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.1e-61 238.8 271 53.1
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.1e-61 238.8 252 54.0
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 8.8e-61 238.0 254 54.7
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.1e-60 237.7 254 53.9
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 7.4e-60 235.0 265 54.7
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 3.7e-59 232.6 257 53.7
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.0e-57 226.9 251 51.0
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 2.0e-57 226.9 256 50.4
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 6.1e-54 215.3 184 60.3
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.3e-53 213.4 225 55.1
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 8.8e-53 211.5 178 61.8
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 8.8e-53 211.5 250 48.8
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.1e-52 211.1 236 51.7
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.3e-51 207.6 257 48.2
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 3.2e-47 193.0 252 48.4
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 7.2e-47 191.8 236 50.4
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 3.0e-45 186.4 170 56.5
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 3.2e-39 166.4 255 41.2
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 5.5e-39 165.6 256 39.8
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.8e-37 160.6 207 48.3
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.5e-36 157.5 139 59.0
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 3.4e-36 156.4 254 39.0
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.7e-32 144.1 98 73.5
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 3.8e-32 142.9 226 40.3
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 6.8e-29 132.1 84 76.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 4.5e-25 119.4 293 33.4
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 5.9e-25 119.0 90 68.9
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.7e-25 118.6 100 66.0
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.8e-24 116.3 100 66.0
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 6.6e-24 115.5 90 65.6
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.9e-23 114.0 180 38.9
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 6.1e-22 109.0 118 47.5
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 4.9e-19 99.4 138 47.1
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 8.3e-19 98.6 66 74.2
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 2.0e-17 94.0 144 45.1
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 5.9e-17 92.4 110 48.2
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 5.6e-15 85.9 84 57.1
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 7.3e-15 85.5 147 41.5
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 2.1e-14 84.0 107 50.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 3.6e-14 83.2 83 55.4
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 8.0e-14 82.0 53 83.0
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 6.8e-13 79.0 105 43.8
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 2.0e-12 77.4 110 41.8
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 7.5e-12 75.5 52 75.0
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 2.9e-11 73.6 266 27.1
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.4e-10 70.5 125 39.2
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 1.3e-08 64.7 37 81.1
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.3e-08 64.7 106 41.5
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.3e-08 63.9 67 59.7
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 2.3e-08 63.9 99 41.4
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 3.3e-07 60.1 93 44.1
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 9.5e-07 58.5 41 65.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 6.2e-06 55.8 74 50.0
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 8.0e-06 55.5 73 52.1


User provided reference genes

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