Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 5.6e-123 444.5 263 100.0
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 8.0e-85 317.8 272 68.4
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 2.6e-83 312.8 264 73.1
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 3.1e-73 279.3 267 60.7
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.6e-69 265.8 264 59.5
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 7.5e-67 258.1 261 59.0
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 7.5e-67 258.1 261 63.6
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 2.2e-66 256.5 261 58.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.6e-64 250.4 263 56.3
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 4.5e-64 248.8 265 60.4
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-63 247.3 262 53.8
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 2.9e-63 246.1 261 59.8
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.9e-63 246.1 261 56.7
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.8e-63 245.7 256 62.9
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 8.6e-63 244.6 265 59.6
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.1e-62 244.2 264 54.9
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.5e-62 243.8 290 52.8
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 6.1e-61 238.4 262 52.7
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 3.0e-60 236.1 268 54.9
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 2.9e-58 229.6 259 55.2
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 4.6e-56 222.2 266 54.1
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 6.0e-56 221.9 264 54.9
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 6.6e-55 218.4 260 53.5
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.9e-54 216.9 258 53.5
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.5e-54 216.5 262 51.9
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 4.3e-54 215.7 265 53.6
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 4.3e-54 215.7 266 53.0
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 8.0e-53 211.5 261 49.0
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.4e-52 210.7 259 48.6
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.8e-52 210.3 266 50.8
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.9e-52 208.0 271 49.8
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.0e-51 206.8 271 50.6
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 2.0e-51 206.8 260 48.5
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.4e-51 206.1 270 50.0
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.4e-51 205.7 270 49.6
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 4.4e-51 205.7 259 51.4
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 7.5e-51 204.9 253 54.9
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.7e-50 203.8 262 56.5
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 2.9e-50 203.0 265 51.7
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.7e-50 202.6 251 53.0
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 3.7e-50 202.6 260 50.8
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 3.7e-50 202.6 163 64.4
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 4.9e-50 202.2 260 49.2
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 6.4e-50 201.8 268 57.5
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 8.3e-50 201.4 259 53.7
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 4.1e-49 199.1 256 57.0
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.4e-49 198.7 269 48.0
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 7.0e-49 198.4 172 58.7
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 9.2e-49 198.0 251 51.8
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.2e-48 197.6 262 48.1
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.2e-48 197.6 250 56.0
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 4.6e-48 195.7 273 55.3
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 4.6e-48 195.7 263 49.8
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.0e-47 194.5 260 49.2
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.0e-47 193.0 269 46.5
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 5.0e-47 192.2 263 48.7
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.1e-46 191.0 268 46.3
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.5e-46 190.7 228 50.0
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 2.5e-46 189.9 259 47.1
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.5e-46 189.9 283 50.9
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 3.3e-46 189.5 258 47.3
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 3.3e-46 189.5 258 48.4
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 3.3e-46 189.5 258 47.3
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 4.3e-46 189.1 266 50.0
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 5.6e-46 188.7 253 45.8
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.6e-45 187.2 257 47.1
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 2.1e-45 186.8 321 44.2
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.8e-45 186.4 260 46.5
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 4.7e-45 185.7 254 48.0
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 6.2e-45 185.3 248 48.0
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 8.1e-45 184.9 249 49.8
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.1e-44 184.5 226 50.0
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.4e-44 184.1 171 56.7
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.8e-44 183.7 254 46.5
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.8e-44 183.7 256 49.2
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 2.3e-44 183.3 249 47.4
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 2.3e-44 183.3 263 46.8
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 8.9e-44 181.4 248 48.8
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.2e-43 181.0 250 48.8
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.2e-43 181.0 208 51.0
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 2.0e-43 180.3 252 48.4
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 2.6e-43 179.9 258 46.9
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 3.4e-43 179.5 266 48.1
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 4.4e-43 179.1 161 60.2
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 5.8e-43 178.7 260 46.5
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 5.8e-43 178.7 231 51.5
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 9.9e-43 177.9 273 43.2
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 9.9e-43 177.9 249 46.6
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 9.9e-43 177.9 249 46.6
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 9.9e-43 177.9 250 48.8
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.7e-42 177.2 252 48.4
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.2e-42 176.8 264 48.5
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 2.2e-42 176.8 226 49.6
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.2e-42 176.8 264 42.8
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.7e-42 176.0 227 52.9
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 3.7e-42 176.0 253 48.2
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 6.4e-42 175.3 266 45.9
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 6.4e-42 175.3 252 43.7
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.4e-41 174.1 259 45.6
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.4e-41 174.1 161 54.0
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.4e-41 174.1 251 46.6
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.4e-41 174.1 298 43.6
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.9e-41 173.7 266 42.9
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.9e-41 173.7 249 46.6
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 7.1e-41 171.8 160 56.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 9.2e-41 171.4 253 48.2
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.6e-40 170.6 192 56.8
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.0e-39 167.9 258 45.7
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 5.1e-39 165.6 164 52.4
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.5e-38 164.1 136 61.0
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.9e-38 163.7 165 53.3
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.9e-38 163.7 162 54.3
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 7.3e-38 161.8 255 42.7
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.2e-37 161.0 262 42.4
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.6e-37 160.6 283 45.9
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 3.6e-37 159.5 235 48.9
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 6.2e-37 158.7 176 56.8
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.1e-36 157.9 230 43.9
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 5.2e-36 155.6 163 50.3
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 8.9e-36 154.8 171 50.9
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 7.6e-35 151.8 248 46.0
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 4.1e-33 146.0 155 51.0
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 7.1e-33 145.2 238 37.8
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.5e-30 136.7 162 46.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 9.6e-30 134.8 267 37.8
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 6.2e-29 132.1 298 34.9
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.2e-27 127.9 358 34.4
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 9.9e-27 124.8 186 44.1
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 2.2e-26 123.6 142 49.3
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.4e-25 120.2 127 49.6
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 4.2e-25 119.4 221 36.7
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.6e-19 100.1 70 68.6
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.3e-18 97.8 196 35.7
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 9.3e-17 91.7 93 47.3
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.1e-16 90.5 137 55.5
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 4.6e-16 89.4 158 39.9
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 4.6e-16 89.4 87 54.0
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 7.9e-16 88.6 252 38.5
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 7.9e-16 88.6 91 50.5
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.3e-15 87.8 128 49.2
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 5.1e-15 85.9 132 38.6
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.1e-13 80.5 128 54.7
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.4e-12 77.8 250 33.2
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.1e-09 68.2 65 55.4
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 7.9e-08 62.0 39 69.2
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 7.9e-08 62.0 39 69.2
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 3.3e-06 56.6 91 33.0


User provided reference genes

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