Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02328_v3 Cicer arietinum L. HOM05D009101 ORTHO05D011226 1.5e-37 159.1 86 100.0
Glyma.09G080400 Glycine max HOM05D009101 ORTHO05D011226 5.0e-28 127.5 85 81.2
Medtr2g045060 Medicago truncatula HOM05D009101 ORTHO05D011226 6.5e-28 127.1 85 78.8
Phvul.009G220900 Phaseolus vulgaris HOM05D009101 ORTHO05D011226 5.2e-25 117.5 85 72.9
VMungo1309G0395 Vigna mungo HOM05D009101 ORTHO05D011226 7.5e-24 113.6 85 72.9
Lalb_Chr08g0232991 Lupinus albus HOM05D009101 ORTHO05D011226 4.1e-22 107.8 78 71.8
Glyma.15G185900 Glycine max HOM05D009101 ORTHO05D011226 1.5e-19 99.4 85 69.4
Psat1g017160 Pisum sativum HOM05D009101 ORTHO05D011226 4.0e-17 91.3 63 77.8
Nn4g25278 Nelumbo nucifera HOM05D009101 ORTHO05D011226 1.5e-16 89.4 73 65.8
ATR0796G016 Amborella trichopoda HOM05D009101 ORTHO05D011226 2.6e-16 88.6 75 64.0
Cfa015746 Carpinus fangiana HOM05D009101 ORTHO05D011226 7.5e-16 87.0 74 67.6
Atru.chr4.3183 Acer truncatum HOM05D009101 ORTHO05D011226 1.7e-15 85.9 76 61.8
MBI18_g39665_MAGBIO Magnolia biondii HOM05D009101 ORTHO05D011226 1.7e-15 85.9 78 61.5
QL06p014659 Quercus lobata HOM05D009101 ORTHO05D011226 4.8e-15 84.3 75 61.3
CiPaw.01G127500 Carya illinoinensis HOM05D009101 ORTHO05D011226 8.3e-15 83.6 74 62.2
Dinv29494 Davidia involucrata HOM05D009101 ORTHO05D011226 1.8e-14 82.4 75 62.7
RcHm_v2.0_Chr4g0427961 Rosa chinensis HOM05D009101 ORTHO05D011226 9.1e-14 80.1 72 58.3
Ciclev10005889m.g Citrus clementina HOM05D009101 ORTHO05D011226 1.6e-13 79.3 77 57.1
FvH4_4g21731 Fragaria vesca HOM05D009101 ORTHO05D011226 2.0e-13 79.0 72 56.9
FAN12G1764 Fragaria x ananassa HOM05D009101 ORTHO05D011226 2.0e-13 79.0 72 56.9
Potri.010G003700 Populus trichocarpa HOM05D009101 ORTHO05D011226 2.0e-13 79.0 67 64.2
CANSAT78G2401 Cannabis sativa HOM05D009101 ORTHO05D011226 7.7e-13 77.0 67 62.7
Oeu002209.1 Olea europaea HOM05D009101 ORTHO05D011226 7.7e-13 77.0 75 58.7
PSO170G1471 Papaver somniferum HOM05D009101 ORTHO05D011226 7.7e-13 77.0 82 51.2
RcHm_v2.0_Chr4g0427931 Rosa chinensis HOM05D009101 ORTHO05D011226 1.7e-12 75.9 72 58.3
PGR004G1430 Punica granatum HOM05D009101 ORTHO05D011226 2.9e-12 75.1 68 57.4
MD16G1133700 Malus domestica HOM05D009101 ORTHO05D011226 3.8e-12 74.7 72 56.9
GSVIVG01017702001 Vitis vinifera HOM05D009101 ORTHO05D011226 3.8e-12 74.7 68 61.8
Eucgr.H04137 Eucalyptus grandis HOM05D009101 ORTHO05D011226 1.5e-11 72.8 75 53.3
Actinidia08061 Actinidia chinensis HOM05D009101 ORTHO05D011226 1.2e-10 69.7 68 58.8
Hma1.2p1_1067F.1_g253870 Hydrangea macrophylla HOM05D009101 ORTHO05D011226 1.0e-09 66.6 62 61.3
Rhsim12G0024800 Rhododendron simsii HOM05D009101 ORTHO05D011226 6.8e-09 63.9 68 52.9
SEGI_22717 Sequoiadendron giganteum HOM05D009101 ORTHO05D011226 8.9e-09 63.5 63 50.8
Os05g0137600 Oryza sativa ssp. japonica HOM05D009101 ORTHO05D011226 3.4e-08 61.6 63 54.0
Gohir.D11G250500 Gossypium hirsutum HOM05D002994 ORTHO05D003337 7.5e-08 60.5 69 43.5
Gorai.007G268600 Gossypium raimondii HOM05D002994 ORTHO05D003337 7.5e-08 60.5 69 43.5
MD13G1137900 Malus domestica HOM05D009101 ORTHO05D011226 7.5e-08 60.5 58 58.6
Oeu007687.2 Olea europaea HOM05D002994 ORTHO05D003337 9.8e-08 60.1 67 47.8
BcaB07g34096 Brassica carinata HOM05D002994 ORTHO05D003337 6.3e-07 57.4 63 44.4
C05p06630 Brassica napus HOM05D002994 ORTHO05D003337 6.3e-07 57.4 69 43.5
FAN07G2413 Fragaria x ananassa HOM05D009101 ORTHO05D011226 8.3e-07 57.0 90 41.1
THA.LOC104821131 Tarenaya hassleriana HOM05D002994 ORTHO05D003337 8.3e-07 57.0 69 42.0
A06p05520 Brassica napus HOM05D002994 ORTHO05D003337 1.1e-06 56.6 63 44.4
BolC5t29423H Brassica oleracea HOM05D002994 ORTHO05D003337 1.1e-06 56.6 63 44.4
BraA06t23760Z Brassica rapa HOM05D002994 ORTHO05D003337 1.1e-06 56.6 63 44.4
Rhsim02G0173800 Rhododendron simsii HOM05D002994 ORTHO05D003337 1.1e-06 56.6 61 42.6
AL1G18960 Arabidopsis lyrata HOM05D002994 ORTHO05D003337 1.8e-06 55.8 71 43.7
CsaV3_6G042440 Cucumis sativus L. HOM05D002994 ORTHO05D003337 2.4e-06 55.5 50 52.0
AT1G08530 Arabidopsis thaliana HOM05D002994 ORTHO05D003337 3.1e-06 55.1 71 43.7
ATR0561G058 Amborella trichopoda HOM05D002994 ORTHO05D003337 4.1e-06 54.7 66 43.9
Carub.0001s0789 Capsella rubella HOM05D002994 ORTHO05D003337 4.1e-06 54.7 71 42.3
Duzib147G1014 Durio zibethinus HOM05D002994 ORTHO05D003337 5.4e-06 54.3 69 44.9
Prupe.8G225000 Prunus persica HOM05D002994 ORTHO05D003337 5.4e-06 54.3 66 40.9
CARHR203320 Cardamine hirsuta HOM05D002994 ORTHO05D003337 7.0e-06 53.9 50 52.0
CDE05G2567 Ceratophyllum demersum HOM05D002994 ORTHO05D003337 7.0e-06 53.9 55 47.3
Duzib177G0745 Durio zibethinus HOM05D002994 ORTHO05D003337 7.0e-06 53.9 66 40.9
Medtr3g094780 Medicago truncatula HOM05D002994 ORTHO05D003337 7.0e-06 53.9 70 42.9
MSTRG.9226 Avicennia marina HOM05D002994 ORTHO05D003337 9.2e-06 53.5 66 42.4
PGSC0003DMG402023121 Solanum tuberosum HOM05D002994 ORTHO05D003337 9.2e-06 53.5 59 45.8
vmacro12907 Vaccinium macrocarpon HOM05D002994 ORTHO05D003337 9.2e-06 53.5 50 54.0


User provided reference genes

Program Settings