Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 7.9e-38 159.8 75 100.0
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.1e-34 149.4 75 92.0
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 2.9e-32 141.4 75 89.3
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 7.2e-31 136.7 76 90.8
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 9.4e-31 136.3 76 86.8
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.7e-30 134.8 75 88.0
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 4.7e-30 134.0 75 88.0
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.0e-28 128.6 74 85.1
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 7.4e-28 126.7 73 80.8
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.3e-27 125.9 81 79.0
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 2.8e-27 124.8 76 82.9
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 3.7e-27 124.4 73 82.2
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 6.3e-27 123.6 74 81.1
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.4e-26 121.7 75 76.0
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 3.1e-26 121.3 76 78.9
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 4.1e-26 120.9 74 79.7
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 5.3e-26 120.6 73 82.2
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 5.3e-26 120.6 77 80.5
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 7.0e-26 120.2 75 81.3
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 2.0e-25 118.6 76 77.6
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 2.0e-25 118.6 75 84.0
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 7.7e-25 116.7 73 83.6
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 3.8e-24 114.4 75 77.3
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 3.8e-24 114.4 74 74.3
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 5.0e-24 114.0 77 77.9
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 6.5e-24 113.6 73 74.0
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.4e-23 112.5 80 68.8
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.4e-23 112.5 74 73.0
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.9e-23 112.1 77 74.0
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.2e-23 111.3 83 68.7
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.2e-23 111.3 71 80.3
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 3.2e-23 111.3 71 80.3
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 4.2e-23 110.9 74 70.3
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 5.5e-23 110.5 68 76.5
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 5.5e-23 110.5 77 72.7
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 7.2e-23 110.2 74 70.3
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 7.2e-23 110.2 72 72.2
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 7.2e-23 110.2 75 69.3
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 9.4e-23 109.8 78 73.1
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 9.4e-23 109.8 75 77.3
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.2e-22 109.4 71 77.5
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.6e-22 109.0 71 78.9
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 1.6e-22 109.0 73 74.0
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 2.1e-22 108.6 78 73.1
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 2.7e-22 108.2 73 71.2
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 6.1e-22 107.1 70 72.9
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.0e-21 106.3 73 74.0
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 3.0e-21 104.8 79 73.4
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 3.9e-21 104.4 74 70.3
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.9e-21 104.4 74 70.3
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.9e-21 104.4 74 70.3
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 6.7e-21 103.6 70 68.6
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 6.7e-21 103.6 73 71.2
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.1e-20 102.8 74 68.9
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 1.5e-20 102.4 73 68.5
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.0e-20 102.1 82 64.6
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.0e-20 102.1 76 68.4
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 4.4e-20 100.9 70 72.9
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 5.7e-20 100.5 84 63.1
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 7.4e-20 100.1 82 63.4
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 9.7e-20 99.8 72 73.6
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 2.2e-19 98.6 71 69.0
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 2.2e-19 98.6 73 64.4
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 6.3e-19 97.1 85 62.4
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 8.2e-19 96.7 71 67.6
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.4e-18 95.9 72 62.5
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 2.4e-18 95.1 84 60.7
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 7.0e-18 93.6 87 59.8
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 9.1e-18 93.2 73 65.8
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 2.0e-17 92.0 66 68.2
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.6e-17 91.7 70 68.6
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 3.5e-17 91.3 73 61.6
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 7.7e-17 90.1 66 66.7
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 7.7e-17 90.1 71 66.2
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 7.7e-17 90.1 71 66.2
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 1.3e-16 89.4 71 66.2
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.3e-16 89.4 55 78.2
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.3e-16 89.4 71 66.2
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.3e-16 89.4 76 60.5
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 5.0e-16 87.4 66 65.2
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.0e-16 87.4 70 67.1
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 8.5e-16 86.7 67 70.1
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-15 85.9 81 60.5
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 2.5e-15 85.1 84 59.5
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 2.5e-15 85.1 84 59.5
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.5e-15 85.1 78 57.7
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 4.2e-15 84.3 70 61.4
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 5.5e-15 84.0 84 58.3
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 5.5e-15 84.0 84 58.3
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 5.5e-15 84.0 69 60.9
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 7.2e-15 83.6 72 58.3
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 7.2e-15 83.6 63 63.5
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 9.4e-15 83.2 72 59.7
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.6e-14 82.4 70 58.6
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 56.9
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 56.9
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 56.9
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 56.9
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.6e-14 82.4 71 57.7
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 56.9
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 56.9
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 56.9
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-14 82.0 84 57.1
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 56.9
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 56.9
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 56.9
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 56.9
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 2.1e-14 82.0 81 56.8
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.1e-14 82.0 82 57.3
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 56.9
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 54.2
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.7e-14 81.6 75 58.7
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.7e-14 81.6 73 60.3
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.7e-14 81.6 82 57.3
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 3.6e-14 81.3 72 55.6
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 3.6e-14 81.3 72 55.6
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 3.6e-14 81.3 72 55.6
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 3.6e-14 81.3 72 59.7
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 6.1e-14 80.5 76 56.6
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 6.1e-14 80.5 82 56.1
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 6.1e-14 80.5 82 56.1
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 6.1e-14 80.5 82 56.1
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 6.1e-14 80.5 82 56.1
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 6.1e-14 80.5 82 56.1
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 8.0e-14 80.1 75 56.0
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 8.0e-14 80.1 82 53.7
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 8.0e-14 80.1 65 61.5
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.0e-13 79.7 79 55.7
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-13 79.7 83 55.4
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-13 79.7 83 55.4
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-13 79.7 72 55.6
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 1.4e-13 79.3 76 56.6
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 2.3e-13 78.6 83 55.4
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 2.3e-13 78.6 65 61.5
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 5.2e-13 77.4 64 60.9
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 8.8e-13 76.6 62 64.5
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.2e-12 76.3 66 65.2
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.5e-12 75.9 61 62.3
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 5.7e-12 73.9 78 51.3
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 7.5e-12 73.6 78 50.0
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 9.7e-12 73.2 81 50.6
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.3e-11 72.8 65 63.1
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.1e-10 69.7 82 50.0
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 2.4e-10 68.6 88 46.6
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 3.1e-10 68.2 93 45.2
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 7.0e-10 67.0 74 43.2
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 2.0e-09 65.5 86 44.2
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 2.0e-09 65.5 75 45.3
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 3.8e-08 61.2 75 48.0
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 4.2e-07 57.8 54 55.6


User provided reference genes

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