Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 1.0e-85 320.1 167 100.0
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 2.1e-62 242.7 154 81.2
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 6.2e-59 231.1 155 80.6
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 6.7e-53 211.1 147 79.6
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 2.1e-51 206.1 154 76.0
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 6.2e-51 204.5 144 78.5
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 9.0e-50 200.7 154 72.1
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 2.2e-48 196.1 144 76.4
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 3.2e-47 192.2 160 67.5
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 7.1e-47 191.0 160 67.5
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 1.6e-46 189.9 141 73.8
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 4.6e-46 188.3 145 72.4
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 3.0e-45 185.7 152 63.8
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 9.7e-44 180.6 152 62.5
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-43 179.5 154 63.0
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.2e-43 179.5 154 63.0
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.4e-42 176.8 155 61.3
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 2.0e-41 172.9 152 59.2
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 1.0e-40 170.6 152 60.5
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-40 169.5 153 59.5
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.9e-40 169.1 153 59.5
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.9e-40 169.1 153 59.5
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 8.5e-40 167.5 151 59.6
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.5e-39 166.0 143 61.5
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 4.2e-39 165.2 166 53.0
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.6e-38 163.3 164 55.5
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.6e-38 163.3 138 63.8
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.7e-38 162.5 166 50.0
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 1.0e-37 160.6 152 61.8
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.8e-37 159.8 164 55.5
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 2.3e-37 159.5 152 56.6
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.3e-37 159.5 143 58.0
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 3.9e-37 158.7 144 59.7
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 8.8e-37 157.5 142 60.6
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-36 157.1 164 54.3
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.5e-36 156.8 153 57.5
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 1.9e-36 156.4 151 56.3
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 4.3e-36 155.2 143 62.9
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.4e-36 154.5 164 54.3
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.4e-36 154.5 164 54.3
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.4e-36 154.5 164 54.3
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.7e-35 153.3 156 51.9
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.7e-35 152.1 151 57.0
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.1e-34 149.1 134 58.2
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 3.1e-34 149.1 133 58.6
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 6.9e-34 147.9 145 56.6
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 9.1e-34 147.5 145 55.9
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 1.0e-32 144.1 163 50.9
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.3e-32 143.7 150 54.0
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 1.3e-32 143.7 163 55.2
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.8e-32 142.1 152 53.3
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 3.8e-32 142.1 139 57.6
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 1.2e-30 137.1 145 53.8
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 1.2e-30 137.1 153 52.3
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 3.6e-30 135.6 152 53.3
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 7.9e-30 134.4 140 54.3
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.0e-29 134.0 134 56.7
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 2.3e-29 132.9 153 51.0
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 5.1e-29 131.7 152 50.7
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 3.3e-28 129.0 129 54.3
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 7.4e-28 127.9 144 51.4
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.3e-27 127.1 98 66.3
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.7e-27 126.7 151 50.3
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.2e-27 126.3 138 52.9
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 2.8e-27 125.9 140 47.9
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 6.3e-27 124.8 134 56.0
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.1e-26 124.0 142 50.7
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.1e-26 124.0 144 47.2
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.8e-26 123.2 142 50.7
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 3.1e-26 122.5 141 48.9
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 3.1e-26 122.5 139 50.4
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 4.1e-26 122.1 143 50.3
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 6.9e-26 121.3 164 48.2
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.2e-25 120.6 140 49.3
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.2e-25 120.6 163 46.0
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.2e-25 120.6 143 49.7
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.2e-25 120.6 142 50.0
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 1.5e-25 120.2 170 44.7
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.3e-24 117.1 142 47.9
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.3e-24 117.1 151 47.7
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 1.7e-24 116.7 143 48.3
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 1.7e-24 116.7 161 44.1
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 5.0e-24 115.2 145 44.8
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 1.9e-23 113.2 122 52.5
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.2e-22 110.5 167 43.1
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 3.6e-22 109.0 140 45.0
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 4.7e-22 108.6 131 45.0
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 1.4e-21 107.1 152 43.4
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.4e-21 107.1 164 43.3
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.8e-21 106.7 143 44.8
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 2.3e-21 106.3 142 45.1
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 3.0e-21 105.9 151 43.0
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 5.2e-21 105.1 143 46.9
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 6.7e-21 104.8 142 45.1
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 6.7e-21 104.8 143 44.1
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 8.8e-21 104.4 141 45.4
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 8.8e-21 104.4 144 43.8
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.0e-20 103.2 146 43.8
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 2.0e-20 103.2 165 40.0
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 7.4e-20 101.3 143 44.1
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.3e-19 100.5 149 44.3
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.7e-19 100.1 158 41.1
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.8e-19 99.4 147 42.9
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 6.3e-19 98.2 155 38.1
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.1e-18 97.4 156 40.4
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 7.0e-18 94.7 112 42.9
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.2e-17 94.0 147 41.5
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 2.0e-17 93.2 149 40.9
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.3e-16 90.5 148 40.5
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 2.2e-16 89.7 150 40.0
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 2.2e-16 89.7 153 37.3
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 2.9e-16 89.4 101 44.6
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 3.8e-16 89.0 140 44.3
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 6.5e-16 88.2 106 46.2
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 8.5e-16 87.8 164 34.1
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 2.5e-15 86.3 156 36.5
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 9.4e-15 84.3 112 48.2
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 2.7e-14 82.8 156 34.0
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 3.6e-14 82.4 143 33.6
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 3.6e-14 82.4 153 34.0
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 1.0e-13 80.9 154 35.1
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 2.3e-13 79.7 143 35.0
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 2.3e-13 79.7 136 39.7
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 3.0e-13 79.3 153 39.9
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 3.0e-13 79.3 142 38.0
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 6.7e-13 78.2 95 43.2
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 8.8e-13 77.8 112 47.3
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.2e-12 77.4 74 48.6
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 3.3e-12 75.9 150 39.3
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 5.7e-12 75.1 155 36.1
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 9.7e-12 74.3 98 34.7
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.2e-11 73.2 112 38.4
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 2.8e-11 72.8 131 40.5
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 2.8e-11 72.8 126 38.1
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 1.4e-10 70.5 163 28.8
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.1e-10 69.3 130 38.5
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 9.1e-10 67.8 97 38.1
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-09 67.4 155 33.5
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 2.0e-09 66.6 128 37.5
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 2.0e-09 66.6 162 30.9
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 2.0e-09 66.6 159 35.8
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 2.7e-09 66.2 116 40.5
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 2.7e-09 66.2 149 34.2
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 4.5e-09 65.5 155 33.5
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 4.5e-09 65.5 158 32.3
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 7.7e-09 64.7 158 36.1
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 1.0e-08 64.3 163 33.1
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.3e-08 63.9 155 33.5
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 1.3e-08 63.9 154 29.2
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 2.2e-08 63.2 141 34.8
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 2.2e-08 63.2 140 33.6
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.9e-08 62.8 132 35.6
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 3.8e-08 62.4 140 35.0
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 6.5e-08 61.6 163 33.1
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 6.5e-08 61.6 112 33.9
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.1e-07 60.8 123 30.9
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.1e-07 60.8 109 32.1
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.1e-07 60.8 140 35.0
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 1.5e-07 60.5 158 32.3
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 1.5e-07 60.5 155 29.0
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 3.2e-07 59.3 161 34.2
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 5.5e-07 58.5 157 28.7
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 5.5e-07 58.5 95 35.8
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 9.4e-07 57.8 160 30.0
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 1.2e-06 57.4 145 32.4
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 1.2e-06 57.4 143 32.9
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 1.6e-06 57.0 153 31.4
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 2.1e-06 56.6 157 31.8
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 3.6e-06 55.8 164 30.5
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 6.1e-06 55.1 166 32.5
AagrBONN_evm.TU.Sc2ySwM_368.250 Anthoceros agrestis HOM05D029953 ORTHO05D009567 6.1e-06 55.1 102 33.3
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 8.0e-06 54.7 94 45.7


User provided reference genes

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