Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02259_v3 Cicer arietinum L. HOM05D007403 ORTHO05D009306 7.7e-152 540.4 269 100.0
TPR.G15151 Trifolium pratense HOM05D007403 ORTHO05D009306 1.2e-107 393.7 503 47.5
Medtr2g043740 Medicago truncatula HOM05D007403 ORTHO05D009306 5.4e-105 384.8 498 47.4
Psat1g137240 Pisum sativum HOM05D007403 ORTHO05D009306 3.8e-98 362.1 505 45.5
Glyma.08G184700 Glycine max HOM05D007403 ORTHO05D009306 3.4e-91 339.0 481 44.3
VMungo0540G0348 Vigna mungo HOM05D007403 ORTHO05D009306 1.1e-89 334.0 534 41.4
Lj6g0017074 Lotus japonicus HOM05D007403 ORTHO05D009306 6.5e-82 308.1 197 79.2
AUR62029925 Chenopodium quinoa HOM05D007403 ORTHO05D009306 9.0e-76 287.7 367 43.9
QL02p098561 Quercus lobata HOM05D007403 ORTHO05D009306 2.6e-75 286.2 537 36.7
TWI59G1473 Tripterygium wilfordii HOM05D007403 ORTHO05D009306 2.2e-74 283.1 521 35.1
Lalb_Chr18g0060841 Lupinus albus HOM05D007403 ORTHO05D009306 6.5e-74 281.6 196 71.9
Ah.12g060250 Amaranthus hybridus HOM05D007403 ORTHO05D009306 1.1e-73 280.8 376 41.5
GSVIVG01023003001 Vitis vinifera HOM05D007403 ORTHO05D009306 2.7e-72 276.2 478 37.9
TAR381G0205 Trochodendron aralioides HOM05D007403 ORTHO05D009306 4.6e-72 275.4 503 36.0
Thecc.02G040500 Theobroma cacao HOM05D007403 ORTHO05D009306 2.5e-70 269.6 506 35.2
Prupe.1G562100 Prunus persica HOM05D007403 ORTHO05D009306 5.7e-70 268.5 507 34.5
Dinv19355 Davidia involucrata HOM05D007403 ORTHO05D009306 2.2e-69 266.5 496 36.3
Lsat_1_v5_gn_7_77881 Lactuca sativa HOM05D007403 ORTHO05D009306 1.8e-68 263.5 453 36.4
Duzib132G0321 Durio zibethinus HOM05D007403 ORTHO05D009306 5.3e-68 261.9 507 34.7
Potri.003G021100 Populus trichocarpa HOM05D007403 ORTHO05D009306 2.0e-67 260.0 505 34.9
COL.COLO4_17887 Corchorus olitorius HOM05D007403 ORTHO05D009306 3.4e-67 259.2 467 36.4
CSS0040815 Camellia sinensis var. sinensis HOM05D007403 ORTHO05D009306 1.7e-66 256.9 510 34.7
EL10Ac2g02449 Beta vulgaris HOM05D007403 ORTHO05D009306 8.5e-66 254.6 493 34.1
Ciclev10000975m.g Citrus clementina HOM05D007403 ORTHO05D009306 5.5e-65 251.9 483 35.8
CANSAT11G1055 Cannabis sativa HOM05D007403 ORTHO05D009306 3.6e-64 249.2 505 33.3
Cc02_g22320 Coffea canephora HOM05D007403 ORTHO05D009306 3.6e-64 249.2 507 33.9
Hma1.2p1_0557F.1_g178350 Hydrangea macrophylla HOM05D007403 ORTHO05D009306 7.9e-64 248.1 195 62.1
Lj5A250G19 Lonicera japonica HOM05D007403 ORTHO05D009306 1.0e-63 247.7 533 32.8
DCAR_001817 Daucus carota HOM05D007403 ORTHO05D009306 2.3e-63 246.5 479 35.3
Atru.chr6.1105 Acer truncatum HOM05D007403 ORTHO05D009306 3.9e-63 245.7 196 61.7
MD08G1224800 Malus domestica HOM05D007403 ORTHO05D009306 6.7e-63 245.0 506 33.4
PSO210G5116 Papaver somniferum HOM05D007403 ORTHO05D009306 1.1e-62 244.2 474 34.8
Gorai.008G041600 Gossypium raimondii HOM05D007403 ORTHO05D009306 1.5e-62 243.8 505 33.7
Gohir.D12G039900 Gossypium hirsutum HOM05D007403 ORTHO05D009306 2.0e-62 243.4 505 33.5
Manes.10G131400 Manihot esculenta HOM05D007403 ORTHO05D009306 4.4e-62 242.3 489 33.5
Ah.12g064270 Amaranthus hybridus HOM05D007403 ORTHO05D009306 7.4e-62 241.5 500 32.0
Nn5g28844 Nelumbo nucifera HOM05D007403 ORTHO05D009306 2.2e-61 240.0 193 60.1
CSS0033747 Camellia sinensis var. sinensis HOM05D007403 ORTHO05D009306 1.1e-60 237.7 197 61.4
Migut.B00669 Erythranthe guttata HOM05D007403 ORTHO05D009306 1.1e-60 237.7 503 32.0
SGA_v2.0_scaffold1G00325 Striga asiatica HOM05D007403 ORTHO05D009306 1.1e-60 237.7 518 31.5
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 1.4e-60 237.3 488 34.4
Sabra03G0012400 Salix brachista HOM05D007403 ORTHO05D009306 1.8e-60 236.9 195 60.0
HanXRQChr11g0338411 Helianthus annuus HOM05D007403 ORTHO05D009306 2.4e-60 236.5 194 59.3
BcaC03g17949 Brassica carinata HOM05D000219 ORTHO05D009306 4.1e-60 235.7 499 32.1
Thhalv10004004m.g Eutrema salsugineum HOM05D007403 ORTHO05D009306 6.9e-60 235.0 504 32.3
Sp2g22680 Schrenkiella parvula HOM05D007403 ORTHO05D009306 2.0e-59 233.4 503 32.0
THA.LOC104798998 Tarenaya hassleriana HOM05D007403 ORTHO05D009306 2.0e-59 233.4 499 32.3
BraA02t08979Z Brassica rapa HOM05D007403 ORTHO05D009306 2.6e-59 233.0 502 31.9
BolC2t12064H Brassica oleracea HOM05D007403 ORTHO05D009306 5.9e-59 231.9 504 31.9
Sc06g0000280 Simmondsia chinensis HOM05D007403 ORTHO05D009306 7.7e-59 231.5 195 57.4
AUR62037684 Chenopodium quinoa HOM05D007403 ORTHO05D009306 2.2e-58 229.9 499 31.3
AUR62024767 Chenopodium quinoa HOM05D007403 ORTHO05D009306 3.8e-58 229.2 499 31.1
Aqoxy5G02020 Aquilegia oxysepala HOM05D007403 ORTHO05D009306 6.5e-58 228.4 196 55.1
AL6G36340 Arabidopsis lyrata HOM05D007403 ORTHO05D009306 1.4e-57 227.3 502 31.3
Sopen01g046850 Solanum pennellii HOM05D007403 ORTHO05D009306 3.2e-57 226.1 505 32.1
CARHR188740 Cardamine hirsuta HOM05D007403 ORTHO05D009306 7.2e-57 224.9 505 31.1
AT5G24750 Arabidopsis thaliana HOM05D007403 ORTHO05D009306 3.6e-56 222.6 505 31.1
BcaB07g29919 Brassica carinata HOM05D007403 ORTHO05D009306 3.6e-56 222.6 501 30.5
SalBow5G2609 Salvia bowleyana HOM05D007403 ORTHO05D009306 2.3e-55 219.9 569 29.9
Carub.0006s2260 Capsella rubella HOM05D007403 ORTHO05D009306 3.0e-55 219.5 502 30.7
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 3.9e-55 219.2 531 31.5
PSO170G1442 Papaver somniferum HOM05D002224 ORTHO05D002446 2.6e-54 216.5 176 61.9
CAN.G1352.31 Capsicum annuum HOM05D007403 ORTHO05D009306 4.4e-54 215.7 194 58.8
Zm00001eb240350 Zea mays HOM05D007403 ORTHO05D009306 9.1e-52 208.0 199 50.8
RcHm_v2.0_Chr7g0224451 Rosa chinensis HOM05D007403 ORTHO05D009306 2.6e-51 206.5 146 69.2
MBI04_g33335_MAGBIO Magnolia biondii HOM05D007403 ORTHO05D009306 2.5e-49 199.9 521 29.6
Aa31LG11G3980 Aethionema arabicum HOM05D007403 ORTHO05D009306 5.5e-49 198.7 229 47.6
C02p60090 Brassica napus HOM05D000219 ORTHO05D009306 2.1e-48 196.8 477 29.8
unitig_27.g24942 Utricularia gibba HOM05D007403 ORTHO05D009306 3.0e-47 193.0 478 29.9
A02p40120 Brassica napus HOM05D000219 ORTHO05D009306 5.2e-47 192.2 481 28.5
Eucgr.G00612 Eucalyptus grandis HOM05D007403 ORTHO05D009306 9.7e-46 188.0 474 28.9
Nitab4.5_0011920g0020 Nicotiana tabacum HOM05D007403 ORTHO05D009306 3.7e-45 186.0 485 29.5
FvH4_5g30191 Fragaria vesca HOM05D007403 ORTHO05D009306 1.1e-44 184.5 507 29.8
vmacro01773 Vaccinium macrocarpon HOM05D007403 ORTHO05D009306 1.4e-44 184.1 204 50.0
SEGI_20290 Sequoiadendron giganteum HOM05D007403 ORTHO05D009306 1.0e-42 177.9 196 46.4
Nitab4.5_0006604g0010 Nicotiana tabacum HOM05D007403 ORTHO05D009306 8.5e-42 174.9 194 50.0
FAN08G0644 Fragaria x ananassa HOM05D007403 ORTHO05D009306 3.2e-41 172.9 195 48.7
ATR1120G172 Amborella trichopoda HOM05D007403 ORTHO05D009306 4.2e-41 172.6 526 26.8
Solyc01g104410.4 Solanum lycopersicum HOM05D007403 ORTHO05D009306 8.0e-40 168.3 475 29.9
Haze_01630 Corylus avellana HOM05D007403 ORTHO05D009306 1.8e-39 167.2 191 49.7
Phvul.006G212700 Phaseolus vulgaris HOM05D007403 ORTHO05D009306 1.5e-38 164.1 98 80.6
Rhsim11G0131100 Rhododendron simsii HOM05D007403 ORTHO05D009306 4.4e-38 162.5 496 27.0
Cpa.g.sc2.9 Carica papaya HOM05D007403 ORTHO05D009306 8.3e-37 158.3 198 47.0
Peaxi162Scf00011g00136 Petunia axillaris HOM05D007403 ORTHO05D009306 2.7e-35 153.3 457 29.3
Phvul.006G212950 Phaseolus vulgaris HOM05D007403 ORTHO05D009306 2.9e-34 149.8 87 83.9
HPP92_020048 Vanilla planifolia HOM05D001327 ORTHO05D002270 2.8e-32 143.3 162 45.7
Pp3c9_24800 Physcomitrium patens HOM05D007403 ORTHO05D009306 1.5e-30 137.5 200 38.0
AagrBONN_evm.TU.Sc2ySwM_344.1532 Anthoceros agrestis HOM05D007403 ORTHO05D009306 3.4e-30 136.3 192 41.7
Os02g0210800 Oryza sativa ssp. japonica HOM05D007403 ORTHO05D009306 8.3e-29 131.7 109 56.0
Gohir.A12G032700 Gossypium hirsutum HOM05D007403 ORTHO05D009306 1.1e-28 131.3 90 68.9
FAN13G0620 Fragaria x ananassa HOM05D007403 ORTHO05D009306 7.3e-25 118.6 81 66.7
Hma1.2p1_0557F.1_g178360 Hydrangea macrophylla HOM05D007403 ORTHO05D009306 2.8e-24 116.7 89 61.8
Cpa.g.sc2.7 Carica papaya HOM05D007403 ORTHO05D009306 3.6e-24 116.3 83 67.5
CAN.G1305.34 Capsicum annuum HOM05D007403 ORTHO05D009306 6.1e-24 115.5 88 60.2
PGSC0003DMG400023750 Solanum tuberosum HOM05D007403 ORTHO05D009306 4.0e-23 112.8 89 57.3
HPP92_020049 Vanilla planifolia HOM05D007403 ORTHO05D009306 1.2e-22 111.3 88 55.7
Sc06g0000290 Simmondsia chinensis HOM05D007403 ORTHO05D009306 1.7e-21 107.5 89 57.3
CiPaw.05G043100 Carya illinoinensis HOM05D007403 ORTHO05D009306 4.9e-21 105.9 75 68.0
CBR_g32500 Chara braunii HOM05D007403 ORTHO05D000800 1.3e-18 97.8 263 30.8
SMO353G0333 Selaginella moellendorffii HOM05D007403 ORTHO05D009306 6.8e-15 85.5 215 30.7
SEGI_06818 Sequoiadendron giganteum HOM05D007403 ORTHO05D009306 9.5e-09 65.1 73 46.6
CDE08G0506 Ceratophyllum demersum HOM05D001336 ORTHO05D001211 4.0e-07 59.7 87 37.9
Cre07.g317650 Chlamydomonas reinhardtii HOM05D007403 ORTHO05D009306 1.2e-06 58.2 53 47.2
Hund17440 Selenicereus undatus HOM05D001336 ORTHO05D001211 1.5e-06 57.8 80 40.0


User provided reference genes

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