Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.8e-48 195.7 104 100.0
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.1e-26 123.2 68 88.2
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.8e-24 115.9 66 84.8
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 2.4e-24 115.5 68 85.3
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 9.3e-21 103.6 70 75.7
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 7.9e-20 100.5 68 76.5
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 7.9e-20 100.5 69 75.4
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 3.0e-19 98.6 69 75.4
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 3.3e-18 95.1 66 72.7
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 5.7e-18 94.4 73 68.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 5.7e-18 94.4 68 72.1
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 7.4e-18 94.0 65 73.8
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.7e-18 93.6 78 65.4
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.3e-17 93.2 68 67.6
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.3e-17 93.2 65 73.8
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.3e-17 93.2 68 70.6
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.8e-17 92.0 70 70.0
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 3.7e-17 91.7 60 73.3
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.8e-17 91.3 88 59.1
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 4.8e-17 91.3 60 73.3
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 6.3e-17 90.9 73 67.1
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.4e-16 89.7 85 58.8
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.4e-16 89.7 85 58.8
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.4e-16 89.0 60 71.7
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 2.4e-16 89.0 68 69.1
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.4e-16 89.0 68 69.1
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.1e-16 88.6 57 77.2
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.1e-16 88.6 57 77.2
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.1e-16 88.6 57 77.2
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.1e-16 88.6 65 73.8
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.1e-16 88.6 65 73.8
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 3.1e-16 88.6 65 69.2
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 3.1e-16 88.6 60 71.7
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 5.3e-16 87.8 60 70.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 5.3e-16 87.8 65 69.2
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 5.3e-16 87.8 68 67.6
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 5.3e-16 87.8 95 55.8
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 6.9e-16 87.4 60 71.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 6.9e-16 87.4 57 75.4
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 9.0e-16 87.0 76 64.5
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 9.0e-16 87.0 60 70.0
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-15 86.7 65 70.8
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-15 86.7 65 70.8
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.2e-15 86.7 65 70.8
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.5e-15 86.3 60 70.0
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.5e-15 86.3 64 68.8
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.5e-15 86.3 60 66.7
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.5e-15 86.3 61 70.5
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-15 86.3 65 72.3
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.0e-15 85.9 60 68.3
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.6e-15 85.5 65 72.3
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.6e-15 85.5 78 59.0
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 2.6e-15 85.5 60 70.0
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.4e-15 85.1 65 69.2
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 3.4e-15 85.1 50 78.0
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 3.4e-15 85.1 65 64.6
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.4e-15 85.1 60 70.0
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 4.5e-15 84.7 62 69.4
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 4.5e-15 84.7 60 68.3
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.5e-15 84.7 60 70.0
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 4.5e-15 84.7 78 56.4
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.9e-15 84.3 57 68.4
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 5.9e-15 84.3 65 69.2
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.0e-14 83.6 57 71.9
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.3e-14 83.2 57 71.9
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.3e-14 83.2 65 69.2
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.3e-14 83.2 57 71.9
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.3e-14 83.2 57 71.9
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 2.2e-14 82.4 86 54.7
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.2e-14 82.4 60 65.0
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.9e-14 82.0 57 70.2
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 2.9e-14 82.0 60 68.3
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 2.9e-14 82.0 76 53.9
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.0e-14 81.3 60 66.7
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 5.0e-14 81.3 57 68.4
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 5.0e-14 81.3 57 68.4
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 5.0e-14 81.3 57 68.4
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 5.0e-14 81.3 43 88.4
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 6.5e-14 80.9 69 60.9
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 6.5e-14 80.9 60 65.0
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 8.5e-14 80.5 70 60.0
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.1e-13 80.1 60 65.0
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.1e-13 80.1 55 69.1
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.1e-13 80.1 65 66.2
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.1e-13 80.1 43 86.0
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.1e-13 80.1 54 70.4
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.4e-13 79.7 57 66.7
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.9e-13 79.3 70 64.3
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.9e-13 79.3 87 49.4
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 2.5e-13 79.0 68 63.2
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.5e-13 79.0 55 69.1
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.5e-13 79.0 55 69.1
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.5e-13 79.0 60 66.7
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 3.2e-13 78.6 60 63.3
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 3.2e-13 78.6 60 63.3
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 4.2e-13 78.2 53 69.8
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 4.2e-13 78.2 57 66.7
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 5.5e-13 77.8 68 57.4
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.6e-12 76.3 60 65.0
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.6e-12 76.3 60 65.0
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.6e-12 76.3 60 61.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 2.1e-12 75.9 57 64.9
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 2.1e-12 75.9 57 64.9
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.1e-12 75.9 57 68.4
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 3.6e-12 75.1 53 69.8
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 4.6e-12 74.7 60 66.7
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 7.9e-12 73.9 68 63.2
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 7.9e-12 73.9 57 68.4
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.4e-11 73.2 60 56.7
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 3.0e-11 72.0 70 55.7
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 3.9e-11 71.6 69 55.1
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 3.9e-11 71.6 60 61.7
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.1e-10 70.1 42 81.0
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.1e-10 70.1 79 55.7
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.0e-10 69.3 49 67.3
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 2.0e-10 69.3 60 58.3
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 2.0e-10 69.3 49 67.3
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.5e-10 68.9 48 72.9
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.3e-10 68.6 43 74.4
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 5.7e-10 67.8 61 55.7
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 7.4e-10 67.4 56 66.1
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 7.4e-10 67.4 59 55.9
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 7.4e-10 67.4 51 60.8
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.3e-09 66.6 49 61.2
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.3e-09 66.6 64 51.6
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.3e-09 66.6 57 57.9
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 1.7e-09 66.2 52 65.4
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.7e-09 66.2 51 58.8
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.7e-09 66.2 52 63.5
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.7e-09 66.2 51 60.8
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.2e-09 65.9 53 60.4
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.8e-09 65.5 42 73.8
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 3.7e-09 65.1 54 61.1
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 6.3e-09 64.3 44 70.5
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 6.3e-09 64.3 79 44.3
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 6.3e-09 64.3 51 60.8
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 8.2e-09 63.9 42 71.4
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.1e-08 63.5 61 54.1
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.8e-08 62.8 47 63.8
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.4e-08 62.4 39 76.9
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 4.1e-08 61.6 48 58.3
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 5.3e-08 61.2 62 48.4
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 6.9e-08 60.8 37 78.4
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 9.1e-08 60.5 62 53.2
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.5e-07 59.7 50 58.0
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 2.0e-07 59.3 37 75.7
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 2.0e-07 59.3 92 43.5
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.6e-07 58.9 51 51.0
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 2.6e-07 58.9 41 63.4
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 3.4e-07 58.5 51 56.9
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 3.4e-07 58.5 70 52.9
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 5.9e-07 57.8 60 53.3
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 5.9e-07 57.8 91 40.7
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.9e-07 57.8 65 52.3
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 5.9e-07 57.8 38 68.4
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 5.9e-07 57.8 51 52.9
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 7.7e-07 57.4 37 70.3
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 1.3e-06 56.6 51 52.9
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.9e-06 55.5 85 41.2
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 6.5e-06 54.3 91 39.6


User provided reference genes

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