Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 3.2e-130 468.4 233 100.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 4.0e-80 302.0 233 70.0
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 8.9e-80 300.8 233 70.4
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.9e-77 293.1 237 67.1
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 2.7e-76 289.3 234 68.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.7e-75 286.6 237 66.7
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 5.6e-74 281.6 233 65.2
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 5.6e-74 281.6 233 63.1
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 7.3e-74 281.2 233 66.1
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.1e-73 279.6 233 66.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-72 277.3 233 65.7
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.8e-72 276.6 237 65.4
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.4e-72 276.2 233 64.8
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.4e-72 276.2 244 61.5
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 4.4e-71 271.9 237 63.3
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 4.4e-71 271.9 237 63.3
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 4.4e-71 271.9 233 64.8
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 5.8e-71 271.6 233 63.5
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 7.6e-71 271.2 237 63.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 7.6e-71 271.2 233 63.9
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 7.6e-71 271.2 233 60.5
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 9.9e-71 270.8 233 63.1
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 2.2e-70 269.6 237 62.9
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.2e-70 269.6 233 63.9
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 2.9e-70 269.2 237 62.9
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.9e-70 269.2 233 63.5
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.8e-70 268.9 237 62.4
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 4.9e-70 268.5 237 62.0
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 6.4e-70 268.1 233 63.5
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 8.4e-70 267.7 233 62.7
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.1e-69 267.3 233 63.5
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-69 267.3 233 63.1
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.4e-69 266.9 233 63.1
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.4e-69 266.9 233 62.7
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 2.4e-69 266.2 233 62.2
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.4e-69 266.2 238 63.4
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.4e-69 266.2 233 62.2
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 4.2e-69 265.4 236 61.9
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 4.2e-69 265.4 237 61.6
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.2e-69 265.4 233 62.2
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.2e-69 265.4 233 60.1
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.3e-69 264.2 233 61.4
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.3e-69 264.2 233 61.4
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.2e-68 263.8 228 62.3
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.2e-68 263.8 233 60.9
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-68 263.5 233 60.5
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.1e-68 263.1 233 60.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.7e-68 262.7 233 59.2
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 3.5e-68 262.3 233 60.9
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 3.5e-68 262.3 233 62.7
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 3.5e-68 262.3 233 63.1
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.5e-68 262.3 233 62.2
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 4.6e-68 261.9 233 63.1
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 6.0e-68 261.5 233 58.8
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 6.0e-68 261.5 233 62.2
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.0e-68 261.5 234 62.0
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.0e-68 261.5 233 61.4
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 6.0e-68 261.5 233 61.4
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 6.0e-68 261.5 233 61.4
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 7.8e-68 261.2 233 62.7
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 7.8e-68 261.2 233 60.9
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 7.8e-68 261.2 233 60.9
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 7.8e-68 261.2 233 61.4
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.0e-67 260.8 233 62.2
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.0e-67 260.8 233 62.2
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.0e-67 260.8 233 60.1
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.3e-67 260.4 233 60.5
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.3e-67 260.4 235 60.9
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.3e-67 259.6 233 61.4
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 3.0e-67 259.2 233 61.4
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.0e-67 259.2 233 60.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.0e-67 259.2 233 59.7
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 3.0e-67 259.2 233 61.4
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 3.0e-67 259.2 233 60.9
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 3.9e-67 258.8 233 60.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 3.9e-67 258.8 233 61.4
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.1e-67 258.5 233 58.4
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 6.6e-67 258.1 233 61.8
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 6.6e-67 258.1 233 59.2
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 6.6e-67 258.1 233 59.7
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 8.7e-67 257.7 230 60.4
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.5e-66 256.9 233 60.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.9e-66 256.5 233 60.5
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.9e-66 256.5 233 61.4
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 2.5e-66 256.1 232 57.3
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.5e-66 256.1 233 60.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.5e-66 256.1 233 60.9
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.5e-66 256.1 233 58.8
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.3e-66 255.8 233 57.5
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.3e-66 255.8 233 58.4
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 4.3e-66 255.4 233 60.5
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 4.3e-66 255.4 233 60.5
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.3e-66 255.4 233 59.7
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.6e-66 255.0 233 58.4
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 5.6e-66 255.0 233 60.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.6e-66 255.0 233 61.4
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 7.3e-66 254.6 233 60.1
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 9.6e-66 254.2 233 60.1
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.3e-65 253.8 233 60.1
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.3e-65 253.8 233 60.1
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 2.1e-65 253.1 233 59.7
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.1e-65 253.1 234 59.4
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 6.2e-65 251.5 234 60.3
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 8.1e-65 251.1 234 60.3
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 8.1e-65 251.1 231 57.6
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.4e-64 250.4 233 58.8
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.8e-64 250.0 231 60.2
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.8e-64 250.0 233 59.7
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.1e-64 249.2 249 55.8
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.0e-64 248.8 241 58.9
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 9.0e-64 247.7 233 58.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.2e-63 247.3 245 58.0
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.2e-63 247.3 233 58.4
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.5e-63 246.9 215 63.7
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 7.6e-63 244.6 234 59.4
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 2.2e-62 243.0 235 57.0
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.9e-62 242.7 233 57.9
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 6.4e-62 241.5 233 57.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.1e-61 240.7 256 53.5
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 4.2e-61 238.8 240 55.0
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 5.4e-61 238.4 222 59.0
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.1e-60 236.5 233 56.2
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.7e-60 236.1 215 61.4
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 6.0e-60 235.0 215 60.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 6.0e-60 235.0 218 59.2
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.0e-59 234.2 215 59.1
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.0e-59 232.6 249 54.6
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 6.7e-59 231.5 215 58.6
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.9e-58 229.9 215 58.1
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 3.3e-58 229.2 233 54.9
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.6e-57 226.9 231 53.2
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 3.7e-57 225.7 232 53.0
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 4.8e-57 225.3 215 59.1
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.1e-56 224.2 214 57.5
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.9e-56 221.5 214 58.4
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.6e-55 219.5 231 51.9
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.6e-52 210.3 221 53.4
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 3.5e-52 209.1 228 52.6
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.5e-52 209.1 222 50.9
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.6e-52 208.8 226 50.9
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 5.1e-51 205.3 217 53.5
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 9.0e-48 194.5 223 49.3
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 4.2e-45 185.7 233 49.4
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 9.7e-42 174.5 97 90.7
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 9.0e-40 167.9 186 50.5
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 7.6e-39 164.9 97 81.4
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.2e-38 163.3 216 45.8
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 4.8e-33 145.6 79 92.4
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.4e-32 144.1 79 91.1
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.1e-32 142.9 78 91.0
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 8.5e-30 134.8 97 75.3
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.2e-28 131.0 70 92.9
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.1e-26 124.4 93 58.1
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.4e-26 121.7 73 71.2
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.3e-25 120.9 70 75.7
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 8.2e-25 118.2 222 42.3
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-21 107.8 99 64.6
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.7e-20 103.2 78 70.5
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 8.0e-20 101.7 225 32.4
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 8.8e-19 98.2 96 62.5
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.1e-18 97.8 97 60.8
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 4.4e-18 95.9 73 61.6
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 6.3e-17 92.0 97 58.8
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.1e-16 89.7 78 53.8
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.0e-15 87.0 104 47.1
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.8e-14 82.8 52 67.3
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.5e-14 81.6 51 80.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.1e-13 81.3 53 77.4
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 3.2e-13 79.7 47 74.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.0e-11 74.7 56 58.9
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.4e-11 74.3 71 53.5
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.3e-10 69.7 72 55.6


User provided reference genes

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