Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 8.8e-108 394.4 344 100.0
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 8.3e-58 228.4 345 68.1
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 3.9e-55 219.5 336 67.9
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 3.9e-55 219.5 351 66.7
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 1.1e-52 211.5 349 66.5
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 1.1e-52 211.5 345 67.2
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 2.6e-51 206.8 344 68.9
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 9.8e-51 204.9 337 66.8
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 1.7e-50 204.1 333 67.0
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.9e-50 202.6 320 58.4
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.9e-49 200.7 320 57.5
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 1.6e-48 197.6 333 65.8
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 2.7e-48 196.8 332 65.7
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 4.6e-48 196.1 331 65.0
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 6.0e-48 195.7 321 67.3
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 1.7e-47 194.1 322 64.0
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.1e-46 191.4 336 64.6
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.5e-46 190.3 336 63.7
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 4.3e-46 189.5 318 65.1
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 7.3e-46 188.7 328 63.4
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 7.3e-46 188.7 334 64.7
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 9.5e-46 188.3 260 77.3
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 9.5e-46 188.3 260 77.3
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 1.6e-45 187.6 334 65.0
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 6.2e-45 185.7 337 59.1
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 4.0e-44 183.0 318 61.3
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 4.0e-44 183.0 325 60.0
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 5.2e-44 182.6 334 61.1
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 5.2e-44 182.6 334 57.2
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.2e-43 181.4 320 57.5
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.5e-43 181.0 320 57.5
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 1.5e-43 181.0 332 73.2
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 2.0e-43 180.6 320 57.5
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 4.4e-43 179.5 320 65.3
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 4.4e-43 179.5 327 57.5
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 5.8e-43 179.1 332 61.7
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 2.9e-42 176.8 330 61.5
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 4.9e-42 176.0 320 56.9
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.4e-41 173.7 331 61.9
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 2.4e-41 173.7 321 59.5
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 3.2e-41 173.3 335 46.0
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.6e-40 171.0 341 54.0
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 2.1e-40 170.6 332 56.0
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 3.5e-40 169.9 317 58.4
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 4.6e-40 169.5 318 63.8
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 6.0e-40 169.1 292 66.4
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 1.7e-39 167.5 319 57.7
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 1.7e-39 167.5 333 60.4
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.3e-39 167.2 318 61.3
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.3e-39 167.2 318 61.3
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 8.6e-39 165.2 318 62.9
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 8.6e-39 165.2 336 60.4
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.1e-38 164.9 155 65.8
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 1.1e-38 164.9 320 62.8
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 1.1e-38 164.9 320 62.8
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 1.1e-38 164.9 320 62.8
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 1.1e-38 164.9 320 62.8
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.5e-38 164.5 318 63.2
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 1.9e-38 164.1 320 63.1
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.3e-38 163.3 318 62.6
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 5.6e-38 162.5 319 62.1
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 1.2e-37 161.4 325 56.9
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.2e-37 161.4 203 67.0
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.1e-37 160.6 318 62.6
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 2.8e-37 160.2 337 58.2
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.8e-36 157.5 316 62.3
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 2.4e-36 157.1 318 62.3
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 2.4e-36 157.1 250 66.8
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 3.1e-36 156.8 322 65.2
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 6.8e-36 155.6 321 65.4
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 2.0e-35 154.1 156 61.5
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 3.4e-35 153.3 322 61.2
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 7.6e-35 152.1 329 59.0
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.7e-34 151.0 318 64.5
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 3.8e-34 149.8 329 57.4
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 4.9e-34 149.4 348 59.5
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 2.4e-33 147.1 322 43.2
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 4.2e-33 146.4 316 62.3
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 4.2e-33 146.4 318 61.6
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 5.4e-33 146.0 317 54.3
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 9.3e-33 145.2 338 54.7
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 4.6e-32 142.9 356 56.5
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 1.0e-31 141.7 330 57.6
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.0e-31 141.7 317 59.9
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.7e-31 141.0 156 61.5
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 1.7e-31 141.0 345 51.0
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 2.3e-31 140.6 318 59.4
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 3.0e-31 140.2 349 65.0
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 5.1e-31 139.4 318 61.9
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 5.1e-31 139.4 324 54.6
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 5.1e-31 139.4 269 58.4
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 5.1e-31 139.4 341 56.0
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 8.7e-31 138.7 172 58.1
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 1.9e-30 137.5 314 46.8
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 7.3e-30 135.6 316 45.6
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.3e-29 134.8 310 68.7
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.1e-29 134.0 318 60.7
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 3.6e-29 133.3 255 61.6
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 6.2e-29 132.5 328 54.9
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 1.1e-28 131.7 344 55.2
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.1e-28 131.7 325 57.2
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 1.4e-28 131.3 312 67.0
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 1.8e-28 131.0 310 64.2
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 2.4e-28 130.6 341 56.3
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 2.4e-28 130.6 201 56.7
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 2.4e-28 130.6 201 56.7
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 3.1e-28 130.2 310 63.9
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 9.0e-28 128.6 328 55.8
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 1.5e-27 127.9 316 62.3
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.5e-27 127.9 310 67.4
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 2.0e-27 127.5 331 53.8
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 2.6e-27 127.1 200 56.5
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 4.5e-27 126.3 327 52.6
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 4.5e-27 126.3 319 56.1
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 5.8e-27 125.9 265 56.6
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 5.8e-27 125.9 265 56.6
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 9.9e-27 125.2 327 56.9
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 9.9e-27 125.2 336 58.6
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.7e-26 124.4 321 55.8
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.2e-26 124.0 329 51.7
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 3.8e-26 123.2 335 54.9
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 6.4e-26 122.5 304 58.2
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.1e-25 121.7 321 62.9
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.1e-25 121.7 322 64.3
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.1e-25 121.7 157 52.2
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.4e-25 121.3 318 58.5
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.4e-25 121.3 155 54.2
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.2e-25 120.2 329 42.6
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 3.2e-25 120.2 316 55.4
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 5.4e-25 119.4 338 51.5
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 5.4e-25 119.4 311 62.7
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 9.3e-25 118.6 323 55.7
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 9.3e-25 118.6 347 53.6
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 2.7e-24 117.1 323 57.3
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 3.5e-24 116.7 328 49.7
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 6.0e-24 115.9 316 48.1
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 7.9e-24 115.5 345 47.8
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.3e-23 114.8 213 45.5
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 1.7e-23 114.4 318 50.9
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 1.7e-23 114.4 318 50.9
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 1.7e-23 114.4 316 55.1
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 3.0e-23 113.6 213 51.2
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 5.1e-23 112.8 317 53.0
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 3.3e-22 110.2 161 51.6
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 4.3e-22 109.8 303 53.1
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 1.3e-21 108.2 335 49.3
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 1.6e-21 107.8 333 57.4
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 1.6e-21 107.8 333 57.4
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 1.6e-21 107.8 333 57.4
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 2.8e-21 107.1 134 54.5
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 1.1e-20 105.1 253 66.0
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 2.4e-20 104.0 171 48.5
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 3.1e-20 103.6 314 56.7
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 5.3e-20 102.8 203 48.8
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.2e-19 101.7 265 61.9
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 1.2e-19 101.7 265 59.6
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.4e-19 100.1 268 44.4
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 3.4e-19 100.1 272 62.1
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 3.4e-19 100.1 272 62.1
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 4.5e-19 99.8 116 63.8
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 4.5e-19 99.8 272 61.4
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 5.8e-19 99.4 261 54.4
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.3e-18 98.2 261 61.7
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 1.7e-18 97.8 349 49.9
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.8e-18 96.7 262 61.8
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 6.4e-18 95.9 180 47.8
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.4e-17 94.0 154 47.4
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.2e-17 93.6 169 49.1
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 9.3e-17 92.0 195 45.1
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 1.6e-16 91.3 166 43.4
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.7e-16 90.5 169 47.9
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 3.5e-16 90.1 270 64.4
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.3e-15 88.2 266 60.9
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 2.3e-15 87.4 96 51.0
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 3.0e-15 87.0 320 51.2
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 3.0e-15 87.0 377 29.7
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 8.7e-15 85.5 154 40.9
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 1.9e-14 84.3 96 49.0
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.9e-14 84.3 96 49.0
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 2.5e-14 84.0 325 54.5
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 4.3e-14 83.2 96 47.9
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.9e-09 67.8 73 49.3
SEGI_36064 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 1.2e-08 65.1 79 64.6
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 5.1e-07 59.7 108 37.0
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 6.7e-07 59.3 217 42.4
Peaxi162Scf00117g00118 Petunia axillaris HOM05D002488 ORTHO05D002613 1.1e-06 58.5 87 56.3
Actinidia17147 Actinidia chinensis HOM05D002212 ORTHO05D002229 7.4e-06 55.8 95 35.8


User provided reference genes

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