Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02108_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 5.3e-149 531.2 304 100.0
Medtr2g038010 Medicago truncatula HOM05D003811 ORTHO05D004470 1.2e-81 307.4 318 60.4
Psat1g144040 Pisum sativum HOM05D003811 ORTHO05D004470 2.4e-72 276.6 317 59.9
TPR.G7568 Trifolium pratense HOM05D002228 ORTHO05D002347 6.6e-67 258.5 314 57.3
Glyma.09G059800 Glycine max HOM05D003811 ORTHO05D004470 3.0e-35 153.3 311 42.1
VMungo1215G0314 Vigna mungo HOM05D003811 ORTHO05D004470 8.7e-35 151.8 331 42.0
Glyma.15G166500 Glycine max HOM05D003811 ORTHO05D004470 1.4e-32 144.4 290 41.0
Psat4g013600 Pisum sativum HOM05D003811 ORTHO05D004470 2.4e-32 143.7 335 41.5
Cfa013454 Carpinus fangiana HOM05D003811 ORTHO05D004470 4.5e-31 139.4 331 40.8
CSS0000053 Camellia sinensis var. sinensis HOM05D003811 ORTHO05D004470 5.0e-30 136.0 339 40.7
Duzib168G0111 Durio zibethinus HOM05D003811 ORTHO05D004470 1.9e-29 134.0 350 39.7
Glyma.13G100700 Glycine max HOM05D003811 ORTHO05D004470 2.5e-29 133.7 326 39.9
CiPaw.07G197300 Carya illinoinensis HOM05D003811 ORTHO05D004470 4.2e-29 132.9 336 39.3
Lalb_Chr13g0299991 Lupinus albus HOM05D003811 ORTHO05D004470 7.2e-29 132.1 323 39.0
TWI63G0214 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 7.2e-29 132.1 313 42.2
Glyma.17G059100 Glycine max HOM05D003811 ORTHO05D004470 1.2e-28 131.3 324 39.5
arahy.Tifrunner.gnm1.ann1.0QJD35 Arachis hypogaea HOM05D003811 ORTHO05D004470 1.6e-28 131.0 353 37.7
arahy.Tifrunner.gnm1.ann1.YRC4PH Arachis hypogaea HOM05D003811 ORTHO05D004470 7.9e-28 128.6 353 37.4
Lalb_Chr07g0180651 Lupinus albus HOM05D003811 ORTHO05D004470 2.3e-27 127.1 312 39.4
MD13G1239300 Malus domestica HOM05D003811 ORTHO05D004470 3.0e-27 126.7 359 37.3
Lj4g0014027 Lotus japonicus HOM05D003811 ORTHO05D004470 3.9e-27 126.3 341 38.7
Phvul.003G141200 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 5.1e-27 125.9 325 37.5
Lalb_Chr12g0199621 Lupinus albus HOM05D003811 ORTHO05D004470 8.8e-27 125.2 298 38.9
Manes.06G019300 Manihot esculenta HOM05D003811 ORTHO05D004470 2.5e-26 123.6 334 38.6
TAR620G0001 Trochodendron aralioides HOM05D003811 ORTHO05D004470 3.3e-26 123.2 326 37.1
Thecc.09G186300 Theobroma cacao HOM05D003811 ORTHO05D004470 5.7e-26 122.5 341 36.4
Phvul.009G236100 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 9.7e-26 121.7 277 39.4
FAN22G1182 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.7e-25 120.9 357 38.7
Rhsim01G0116800 Rhododendron simsii HOM05D003811 ORTHO05D004470 1.7e-25 120.9 325 35.1
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 1.7e-25 120.9 328 35.7
Eucgr.C00112 Eucalyptus grandis HOM05D003811 ORTHO05D004470 3.7e-25 119.8 333 38.1
Ca_27932_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 4.8e-25 119.4 333 37.8
Duzib150G1212 Durio zibethinus HOM05D003811 ORTHO05D004470 8.2e-25 118.6 345 36.5
GSVIVG01010855001 Vitis vinifera HOM05D003811 ORTHO05D004470 8.2e-25 118.6 324 37.3
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.1e-24 118.2 355 38.3
FvH4_4g07270 Fragaria vesca HOM05D003811 ORTHO05D004470 1.4e-24 117.9 354 38.7
Medtr4g127420 Medicago truncatula HOM05D003811 ORTHO05D004470 1.4e-24 117.9 328 37.2
TPR.G32975 Trifolium pratense HOM05D003811 ORTHO05D004470 1.4e-24 117.9 336 36.9
FAN17G0360 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.1e-24 116.7 357 37.3
Migut.L01879 Erythranthe guttata HOM05D003811 ORTHO05D004470 5.3e-24 115.9 325 37.2
Hund13780 Selenicereus undatus HOM05D003811 ORTHO05D004470 6.9e-24 115.5 360 35.6
Sc10g0001710 Simmondsia chinensis HOM05D003811 ORTHO05D004470 6.9e-24 115.5 351 35.6
CAN.G192.5 Capsicum annuum HOM05D003811 ORTHO05D004470 9.1e-24 115.2 364 33.2
Cpa.g.sc95.8 Carica papaya HOM05D003811 ORTHO05D004470 9.1e-24 115.2 366 36.6
vmacro05996 Vaccinium macrocarpon HOM05D003811 ORTHO05D004470 9.1e-24 115.2 350 35.4
Ah.10g036890 Amaranthus hybridus HOM05D003811 ORTHO05D004470 1.2e-23 114.8 368 34.5
RcHm_v2.0_Chr4g0399481 Rosa chinensis HOM05D003811 ORTHO05D004470 1.2e-23 114.8 347 38.6
MD16G1248400 Malus domestica HOM05D003811 ORTHO05D004470 2.0e-23 114.0 362 36.2
Hund16072 Selenicereus undatus HOM05D003811 ORTHO05D004470 3.4e-23 113.2 378 34.4
TWI34G1601 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 4.5e-23 112.8 305 38.4
DCAR_014667 Daucus carota HOM05D003811 ORTHO05D004470 5.9e-23 112.5 327 37.0
Potri.006G075200 Populus trichocarpa HOM05D003811 ORTHO05D004470 5.9e-23 112.5 368 34.2
DCAR_018030 Daucus carota HOM05D003811 ORTHO05D004470 1.3e-22 111.3 341 36.4
Sabra18G0116100 Salix brachista HOM05D003811 ORTHO05D004470 1.3e-22 111.3 371 34.5
SalBow5G4432 Salvia bowleyana HOM05D003811 ORTHO05D004470 1.3e-22 111.3 316 37.0
Aqoxy7G02811 Aquilegia oxysepala HOM05D003811 ORTHO05D004470 1.7e-22 110.9 341 34.3
Oeu034800.1 Olea europaea HOM05D003811 ORTHO05D004470 1.7e-22 110.9 338 36.4
SalBow5G0957 Salvia bowleyana HOM05D003811 ORTHO05D004470 1.7e-22 110.9 316 36.4
Peaxi162Scf01038g00011 Petunia axillaris HOM05D003811 ORTHO05D004470 2.9e-22 110.2 352 32.4
Migut.J00797 Erythranthe guttata HOM05D003811 ORTHO05D004470 5.0e-22 109.4 343 34.1
Oeu006847.1 Olea europaea HOM05D003811 ORTHO05D004470 5.0e-22 109.4 346 37.0
Sopen07g004460 Solanum pennellii HOM05D003811 ORTHO05D004470 6.5e-22 109.0 362 33.7
Cc06_g20840 Coffea canephora HOM05D003811 ORTHO05D004470 8.5e-22 108.6 192 47.4
Oeu018819.1 Olea europaea HOM05D003811 ORTHO05D004470 8.5e-22 108.6 339 33.9
Solyc07g008540.3 Solanum lycopersicum HOM05D003811 ORTHO05D004470 8.5e-22 108.6 363 33.9
Dinv25445 Davidia involucrata HOM05D003811 ORTHO05D004470 1.4e-21 107.8 333 36.3
ClCG11G011760 Citrullus lanatus HOM05D003811 ORTHO05D004470 2.5e-21 107.1 349 31.5
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.2e-21 106.7 354 35.0
Dinv41179 Davidia involucrata HOM05D003811 ORTHO05D004470 4.2e-21 106.3 332 35.2
Ciclev10008308m.g Citrus clementina HOM05D003811 ORTHO05D004470 5.5e-21 105.9 365 38.6
Atru.chr7.754 Acer truncatum HOM05D003811 ORTHO05D004470 9.4e-21 105.1 322 34.5
Atru.chr7.775 Acer truncatum HOM05D003811 ORTHO05D004470 9.4e-21 105.1 322 34.5
AUR62040721 Chenopodium quinoa HOM05D003811 ORTHO05D004470 9.4e-21 105.1 353 34.8
Oeu019552.1 Olea europaea HOM05D003811 ORTHO05D004470 1.2e-20 104.8 341 32.8
PGSC0003DMG400022983 Solanum tuberosum HOM05D003811 ORTHO05D004470 1.6e-20 104.4 363 35.3
EL10Ac2g04726 Beta vulgaris HOM05D003811 ORTHO05D004470 2.1e-20 104.0 376 32.2
Sed0004951 Sechium edule HOM05D003811 ORTHO05D004470 2.1e-20 104.0 343 35.0
MELO3C003975.2 Cucumis melo HOM05D003811 ORTHO05D004470 2.7e-20 103.6 361 33.2
Rhsim03G0266200 Rhododendron simsii HOM05D003811 ORTHO05D004470 2.7e-20 103.6 347 36.3
CsaV3_2G008720 Cucumis sativus L. HOM05D003811 ORTHO05D004470 3.6e-20 103.2 361 33.5
FvH4_6g24780 Fragaria vesca HOM05D003811 ORTHO05D004470 7.9e-20 102.1 353 34.8
Nitab4.5_0000491g0080 Nicotiana tabacum HOM05D003811 ORTHO05D004470 1.0e-19 101.7 360 33.1
Gohir.A05G002200 Gossypium hirsutum HOM05D003811 ORTHO05D004470 1.4e-19 101.3 275 38.2
Sed0025374 Sechium edule HOM05D003811 ORTHO05D004470 1.4e-19 101.3 332 33.7
AUR62012114 Chenopodium quinoa HOM05D003811 ORTHO05D004470 2.3e-19 100.5 353 34.6
Ah.16g102470 Amaranthus hybridus HOM05D003811 ORTHO05D008019 3.9e-19 99.8 373 33.0
Prupe.1G074900 Prunus persica HOM05D003811 ORTHO05D004470 6.7e-19 99.0 361 32.1
Sabra06G0055900 Salix brachista HOM05D003811 ORTHO05D004470 6.7e-19 99.0 365 31.8
Lj5C615T3 Lonicera japonica HOM05D003811 ORTHO05D004470 8.8e-19 98.6 355 36.9
Nitab4.5_0000949g0020 Nicotiana tabacum HOM05D003811 ORTHO05D004470 2.0e-18 97.4 354 32.2
MBI16_g05834_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 2.6e-18 97.1 346 32.1
Nitab4.5_0000949g0010 Nicotiana tabacum HOM05D003811 ORTHO05D004470 2.6e-18 97.1 353 31.7
Gorai.009G002400 Gossypium raimondii HOM05D003811 ORTHO05D004470 4.4e-18 96.3 276 37.7
Gohir.D05G002600 Gossypium hirsutum HOM05D003811 ORTHO05D004470 7.4e-18 95.5 282 37.6
Potri.018G142100 Populus trichocarpa HOM05D003811 ORTHO05D004470 7.4e-18 95.5 390 32.3
BcaC09g50723 Brassica carinata HOM05D003811 ORTHO05D004470 1.3e-17 94.7 342 33.3
Lsat_1_v5_gn_8_69001 Lactuca sativa HOM05D003811 ORTHO05D004470 1.3e-17 94.7 322 33.2
Lj5C612T1 Lonicera japonica HOM05D003811 ORTHO05D004470 1.3e-17 94.7 346 37.0
MSTRG.10438 Avicennia marina HOM05D003811 ORTHO05D004470 2.8e-17 93.6 329 33.7
Hma1.2p1_1326F.1_g275850 Hydrangea macrophylla HOM05D003811 ORTHO05D004470 3.7e-17 93.2 325 33.8
FAN02G0923 Fragaria x ananassa HOM05D003811 ORTHO05D004470 6.3e-17 92.4 348 33.0
BolC9t57752H Brassica oleracea HOM05D003811 ORTHO05D004470 8.2e-17 92.0 299 31.8
C01p21610 Brassica napus HOM05D003811 ORTHO05D004470 1.1e-16 91.7 342 33.0
BolC1t02080H Brassica oleracea HOM05D003811 ORTHO05D004470 1.1e-16 91.7 342 33.0
MBI13_g34046_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 1.8e-16 90.9 325 35.1
Manes.14G159300 Manihot esculenta HOM05D003811 ORTHO05D004470 3.1e-16 90.1 335 31.9
PGR001G0001 Punica granatum HOM05D003811 ORTHO05D004470 4.1e-16 89.7 328 34.5
Lsat_1_v5_gn_5_83141 Lactuca sativa HOM05D003811 ORTHO05D004470 9.1e-16 88.6 354 37.9
HanXRQChr03g0065501 Helianthus annuus HOM05D003811 ORTHO05D004470 2.0e-15 87.4 406 29.1
BcaC06g32778 Brassica carinata HOM05D003811 ORTHO05D004470 2.6e-15 87.0 329 32.8
COL.COLO4_07099 Corchorus olitorius HOM05D003811 ORTHO05D004470 2.6e-15 87.0 359 32.3
PSO063G0992 Papaver somniferum HOM05D003811 ORTHO05D004470 2.6e-15 87.0 353 31.4
PSO170G1122 Papaver somniferum HOM05D003811 ORTHO05D004470 3.5e-15 86.7 350 31.1
A10p14570 Brassica napus HOM05D003811 ORTHO05D004470 5.9e-15 85.9 300 32.0
QL02p046940 Quercus lobata HOM05D003811 ORTHO05D004470 5.9e-15 85.9 349 33.8
Lsat_1_v5_gn_7_56240 Lactuca sativa HOM05D003811 ORTHO05D004470 7.7e-15 85.5 354 30.8
BraA10t43544Z Brassica rapa HOM05D003811 ORTHO05D004470 1.7e-14 84.3 300 31.7
MSTRG.26548 Avicennia marina HOM05D003811 ORTHO05D004470 2.2e-14 84.0 338 31.4
C09p49010 Brassica napus HOM05D003811 ORTHO05D004470 2.2e-14 84.0 308 31.8
BcaB05g22326 Brassica carinata HOM05D003811 ORTHO05D004470 2.9e-14 83.6 343 30.3
CDE06G2566 Ceratophyllum demersum HOM05D003811 ORTHO05D004470 2.9e-14 83.6 313 29.7
Thhalv10025322m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 2.9e-14 83.6 344 31.4
Nn8g40778 Nelumbo nucifera HOM05D003811 ORTHO05D004470 2.9e-14 83.6 331 32.6
BcaB08g36076 Brassica carinata HOM05D003811 ORTHO05D004470 3.8e-14 83.2 306 31.0
BcaC04g19992 Brassica carinata HOM05D003811 ORTHO05D004470 3.8e-14 83.2 308 31.8
SGA_v2.0_scaffold31G12764 Striga asiatica HOM05D003811 ORTHO05D004470 5.0e-14 82.8 192 45.3
BraA01t01681Z Brassica rapa HOM05D003811 ORTHO05D004470 3.2e-13 80.1 259 35.1
Sp6g18910 Schrenkiella parvula HOM05D003811 ORTHO05D004470 3.2e-13 80.1 378 30.2
AL8G33110 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 4.2e-13 79.7 340 29.4
AT5G57180 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 4.2e-13 79.7 337 30.9
BraA03t14705Z Brassica rapa HOM05D003811 ORTHO05D004470 7.2e-13 79.0 327 29.7
Thhalv10013517m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 9.4e-13 78.6 372 30.9
Sp7g24010 Schrenkiella parvula HOM05D003811 ORTHO05D004470 1.2e-12 78.2 183 41.5
unitig_8.g4051 Utricularia gibba HOM05D003811 ORTHO05D004470 1.2e-12 78.2 262 34.4
HanXRQChr09g0245431 Helianthus annuus HOM05D003811 ORTHO05D004470 1.6e-12 77.8 384 28.4
A01p17250 Brassica napus HOM05D003811 ORTHO05D004470 2.1e-12 77.4 259 34.4
CARHR270970 Cardamine hirsuta HOM05D003811 ORTHO05D004470 3.6e-12 76.6 338 30.2
A03p56350 Brassica napus HOM05D003811 ORTHO05D004470 6.1e-12 75.9 182 38.5
Carub.0008s1769 Capsella rubella HOM05D003811 ORTHO05D004470 1.4e-11 74.7 341 28.4
CARHR233500 Cardamine hirsuta HOM05D003811 ORTHO05D004470 1.4e-11 74.7 320 30.6
Eucgr.C02219 Eucalyptus grandis HOM05D003811 ORTHO05D004470 5.2e-11 72.8 339 30.4
HanXRQChr10g0308851 Helianthus annuus HOM05D003811 ORTHO05D004470 8.8e-11 72.0 340 31.2
BolC7t45947H Brassica oleracea HOM05D003811 ORTHO05D004470 1.1e-10 71.6 183 38.3
Oeu064847.1 Olea europaea HOM05D003811 ORTHO05D004470 1.5e-10 71.2 113 46.9
C07p54590 Brassica napus HOM05D003811 ORTHO05D004470 2.6e-10 70.5 183 38.3
BraA02t05937Z Brassica rapa HOM05D003811 ORTHO05D004470 2.6e-10 70.5 290 28.6
Carub.0007s1496 Capsella rubella HOM05D003811 ORTHO05D004470 2.6e-10 70.5 337 29.7
A02p08670 Brassica napus HOM05D003811 ORTHO05D004470 3.3e-10 70.1 290 28.6
unitig_22.g5159 Utricularia gibba HOM05D003811 ORTHO05D004470 3.3e-10 70.1 282 31.6
Aa31LG3G13080 Aethionema arabicum HOM05D003811 ORTHO05D004470 1.3e-09 68.2 209 35.4
AT4G25990 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 1.7e-09 67.8 156 37.2
ECA240G2391 Erigeron canadensis HOM05D003811 ORTHO05D004470 1.7e-09 67.8 348 26.7
BcaNung03775 Brassica carinata HOM05D003811 ORTHO05D004470 2.2e-09 67.4 183 37.7
Actinidia38496 Actinidia chinensis HOM05D003811 ORTHO05D004470 2.8e-09 67.0 164 34.1
CiPaw.08G032400 Carya illinoinensis HOM05D003811 ORTHO05D004470 5.3e-08 62.8 335 29.9
AL7G27010 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 7.0e-08 62.4 267 29.6
HPP92_010287 Vanilla planifolia HOM05D003811 ORTHO05D004470 2.7e-07 60.5 334 28.4
SGA_v2.0_scaffold511G52626 Striga asiatica HOM05D003811 ORTHO05D004470 4.5e-07 59.7 308 28.2
ATR0626G357 Amborella trichopoda HOM05D003811 ORTHO05D004470 5.9e-07 59.3 123 39.8
BcaC03g14176 Brassica carinata HOM05D003811 ORTHO05D004470 5.9e-07 59.3 319 28.5
C02p14510 Brassica napus HOM05D003811 ORTHO05D004470 5.9e-07 59.3 319 28.5
BolC2t07575H Brassica oleracea HOM05D003811 ORTHO05D004470 5.9e-07 59.3 319 28.5
HPP92_017127 Vanilla planifolia HOM05D003811 ORTHO05D004470 5.0e-06 56.2 192 39.1
HanXRQChr05g0141071 Helianthus annuus HOM05D003811 ORTHO05D004470 6.5e-06 55.8 287 28.2
SGA_v2.0_scaffold112G31580 Striga asiatica HOM05D003811 ORTHO05D004470 6.5e-06 55.8 187 36.4


User provided reference genes

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