Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02084_v3 Cicer arietinum L. HOM05D006970 ORTHO05D008332 2.1e-100 369.0 183 100.0
Ca_02089_v3 Cicer arietinum L. HOM05D006970 ORTHO05D008332 2.1e-100 369.0 183 100.0
Medtr2g037760 Medicago truncatula HOM05D006970 ORTHO05D008332 1.0e-78 297.0 182 84.1
Psat1g144640 Pisum sativum HOM05D006970 ORTHO05D008332 3.6e-76 288.5 185 82.7
Glyma.15G164800 Glycine max HOM05D006970 ORTHO05D008332 1.0e-62 243.8 185 70.8
Glyma.09G058700 Glycine max HOM05D006970 ORTHO05D008332 3.0e-62 242.3 185 71.9
Lj6g0012098 Lotus japonicus HOM05D006970 ORTHO05D008332 3.9e-62 241.9 191 69.6
Lalb_Chr11g0074841 Lupinus albus HOM05D006970 ORTHO05D008332 1.3e-57 226.9 187 67.4
VMungo1309G0689 Vigna mungo HOM05D006970 ORTHO05D008332 5.4e-56 221.5 181 65.2
Phvul.009G237000 Phaseolus vulgaris HOM05D006970 ORTHO05D008332 1.9e-53 213.0 181 63.5
arahy.Tifrunner.gnm1.ann1.7NZ92R Arachis hypogaea HOM05D006970 ORTHO05D008332 2.4e-51 206.1 204 58.8
Medtr4g127530 Medicago truncatula HOM05D006970 ORTHO05D008332 4.9e-49 198.4 186 59.7
TPR.G5397 Trifolium pratense HOM05D006970 ORTHO05D008332 2.4e-48 196.1 183 61.2
Lalb_Chr08g0231751 Lupinus albus HOM05D006970 ORTHO05D008332 5.1e-46 188.3 190 60.0
Lalb_Chr08g0231861 Lupinus albus HOM05D006970 ORTHO05D008332 5.1e-46 188.3 190 60.0
Phvul.003G142300 Phaseolus vulgaris HOM05D006970 ORTHO05D008332 1.1e-45 187.2 187 56.1
Cfa013442 Carpinus fangiana HOM05D006970 ORTHO05D008332 1.5e-45 186.8 182 55.5
Glyma.13G099800 Glycine max HOM05D006970 ORTHO05D008332 3.3e-45 185.7 185 56.8
CiPaw.07G196100 Carya illinoinensis HOM05D006970 ORTHO05D008332 4.3e-45 185.3 186 54.3
Glyma.17G060200 Glycine max HOM05D006970 ORTHO05D008332 2.1e-44 183.0 185 55.7
Prupe.1G076900 Prunus persica HOM05D006970 ORTHO05D008332 8.1e-44 181.0 199 53.8
Haze_22007 Corylus avellana HOM05D006970 ORTHO05D008332 1.2e-42 177.2 185 53.0
Cfa013439 Carpinus fangiana HOM05D006970 ORTHO05D008332 2.0e-42 176.4 184 54.9
TPR.G30780 Trifolium pratense HOM05D006970 ORTHO05D008332 2.0e-42 176.4 125 75.2
QL02p047741 Quercus lobata HOM05D006970 ORTHO05D008332 3.4e-42 175.6 183 53.6
Cfa013441 Carpinus fangiana HOM05D006970 ORTHO05D008332 1.7e-41 173.3 185 54.1
Haze_22006 Corylus avellana HOM05D006970 ORTHO05D008332 1.7e-41 173.3 181 52.5
MD16G1250000 Malus domestica HOM05D006970 ORTHO05D008332 6.4e-41 171.4 208 50.5
Cfa013440 Carpinus fangiana HOM05D006970 ORTHO05D008332 1.6e-39 166.8 190 52.6
MD13G1243500 Malus domestica HOM05D006970 ORTHO05D008332 1.6e-39 166.8 199 49.7
Lalb_Chr12g0199561 Lupinus albus HOM05D006970 ORTHO05D008332 2.1e-39 166.4 181 53.6
TAR626G0909 Trochodendron aralioides HOM05D006970 ORTHO05D008332 1.0e-38 164.1 189 50.3
vmacro20825 Vaccinium macrocarpon HOM05D006970 ORTHO05D008332 1.3e-38 163.7 190 50.5
Haze_22008 Corylus avellana HOM05D006970 ORTHO05D008332 1.7e-38 163.3 171 53.8
COL.COLO4_34251 Corchorus olitorius HOM05D006970 ORTHO05D008332 8.7e-38 161.0 191 49.7
Manes.06G020600 Manihot esculenta HOM05D006970 ORTHO05D008332 1.1e-37 160.6 181 48.1
Lj4g0006636 Lotus japonicus HOM05D006970 ORTHO05D008332 4.3e-37 158.7 188 53.2
RcHm_v2.0_Chr4g0399841 Rosa chinensis HOM05D006970 ORTHO05D008332 4.3e-37 158.7 199 44.7
Rhsim01G0118800 Rhododendron simsii HOM05D006970 ORTHO05D008332 5.6e-37 158.3 189 46.0
Thecc.09G184300 Theobroma cacao HOM05D006970 ORTHO05D008332 9.6e-37 157.5 187 50.3
Thecc.09G184400 Theobroma cacao HOM05D006970 ORTHO05D008332 2.8e-36 156.0 182 50.0
FvH4_4g07400 Fragaria vesca HOM05D006970 ORTHO05D008332 1.4e-35 153.7 205 44.4
FAN12G3539 Fragaria x ananassa HOM05D006970 ORTHO05D008332 1.4e-35 153.7 205 44.4
CiPaw.08G033400 Carya illinoinensis HOM05D006970 ORTHO05D008332 3.1e-35 152.5 173 52.0
FAN22G0526 Fragaria x ananassa HOM05D006970 ORTHO05D008332 3.1e-35 152.5 198 44.4
FAN17G1729 Fragaria x ananassa HOM05D006970 ORTHO05D008332 5.3e-35 151.8 202 45.5
FAN07G0294 Fragaria x ananassa HOM05D006970 ORTHO05D008332 1.2e-34 150.6 204 44.1
PGR142G3285 Punica granatum HOM05D006970 ORTHO05D008332 5.8e-34 148.3 187 46.0
TAR383G0018 Trochodendron aralioides HOM05D006970 ORTHO05D008332 9.9e-34 147.5 183 46.4
Atru.chr7.798 Acer truncatum HOM05D006970 ORTHO05D008332 1.7e-33 146.7 186 49.5
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 2.9e-33 146.0 177 48.6
Dinv41166 Davidia involucrata HOM05D006970 ORTHO05D008332 4.9e-33 145.2 138 54.3
Gohir.A13G209000 Gossypium hirsutum HOM05D006970 ORTHO05D008332 4.9e-33 145.2 183 44.3
Potri.018G143700 Populus trichocarpa HOM05D006970 ORTHO05D008332 8.4e-33 144.4 184 44.6
Duzib168G1017 Durio zibethinus HOM05D006970 ORTHO05D008332 1.4e-32 143.7 181 47.5
Sabra18G0117100 Salix brachista HOM05D006970 ORTHO05D008332 2.4e-32 142.9 184 45.7
Gorai.013G243700 Gossypium raimondii HOM05D006970 ORTHO05D008332 3.2e-32 142.5 183 43.7
Duzib168G1189 Durio zibethinus HOM05D006970 ORTHO05D008332 5.4e-32 141.7 180 47.8
Gohir.D13G213400 Gossypium hirsutum HOM05D006970 ORTHO05D008332 1.6e-31 140.2 183 43.2
Nn8g40876 Nelumbo nucifera HOM05D006970 ORTHO05D008332 1.6e-31 140.2 193 46.1
Cc06_g21770 Coffea canephora HOM05D006970 ORTHO05D008332 2.1e-31 139.8 193 42.5
Oeu015404.1 Olea europaea HOM05D006970 ORTHO05D008332 2.1e-31 139.8 191 44.5
Peaxi162Scf00324g10017 Petunia axillaris HOM05D006970 ORTHO05D008332 2.1e-31 139.8 193 45.6
Eucgr.C00123 Eucalyptus grandis HOM05D006970 ORTHO05D008332 2.7e-31 139.4 208 41.3
Peaxi162Scf00324g00005 Petunia axillaris HOM05D006970 ORTHO05D008332 3.5e-31 139.0 189 45.0
Solyc07g008930.1 Solanum lycopersicum HOM05D006970 ORTHO05D008332 3.9e-30 135.6 191 44.5
PGSC0003DMG400028751 Solanum tuberosum HOM05D006970 ORTHO05D008332 5.1e-30 135.2 179 45.8
Ciclev10009598m.g Citrus clementina HOM05D006970 ORTHO05D008332 6.7e-30 134.8 181 44.8
Sabra06G0057400 Salix brachista HOM05D006970 ORTHO05D008332 8.7e-30 134.4 181 42.0
TAR625G0812 Trochodendron aralioides HOM05D006970 ORTHO05D008332 4.3e-29 132.1 176 43.8
Potri.006G076500 Populus trichocarpa HOM05D006970 ORTHO05D008332 9.6e-29 131.0 184 41.8
Gohir.D05G003200 Gossypium hirsutum HOM05D006970 ORTHO05D008332 2.1e-28 129.8 186 46.2
Gorai.009G002800 Gossypium raimondii HOM05D006970 ORTHO05D008332 2.8e-28 129.4 186 46.2
PGSC0003DMG400028750 Solanum tuberosum HOM05D006970 ORTHO05D008332 4.8e-28 128.6 189 43.9
Migut.O00829 Erythranthe guttata HOM05D006970 ORTHO05D008332 8.1e-28 127.9 187 40.1
Migut.L01891 Erythranthe guttata HOM05D006970 ORTHO05D008332 1.4e-27 127.1 178 39.9
COL.COLO4_34244 Corchorus olitorius HOM05D006970 ORTHO05D008332 6.9e-27 124.8 191 43.5
Gohir.A05G002800 Gossypium hirsutum HOM05D006970 ORTHO05D008332 2.6e-26 122.9 167 45.5
Nitab4.5_0000007g0270 Nicotiana tabacum HOM05D006970 ORTHO05D008332 5.8e-26 121.7 180 42.2
Eucgr.C02224 Eucalyptus grandis HOM05D006970 ORTHO05D008332 9.9e-26 120.9 213 42.7
Nitab4.5_0001335g0030 Nicotiana tabacum HOM05D006970 ORTHO05D008332 9.9e-26 120.9 180 40.6
Ciclev10010480m.g Citrus clementina HOM05D006970 ORTHO05D008332 1.9e-24 116.7 170 47.6
Ciclev10009783m.g Citrus clementina HOM05D006970 ORTHO05D008332 3.2e-24 115.9 170 41.2
Sed0023812 Sechium edule HOM05D006970 ORTHO05D008332 2.1e-23 113.2 192 39.6
MBI13_g31534_MAGBIO Magnolia biondii HOM05D006970 ORTHO05D008332 3.5e-23 112.5 179 42.5
DCAR_019820 Daucus carota HOM05D000178 ORTHO05D001582 4.6e-23 112.1 188 38.8
Aqoxy7G02762 Aquilegia oxysepala HOM05D006970 ORTHO05D008332 1.0e-22 110.9 173 39.9
CDE04G3128 Ceratophyllum demersum HOM05D006970 ORTHO05D008332 1.0e-22 110.9 187 38.0
MELO3C003983.2 Cucumis melo HOM05D006970 ORTHO05D008332 1.3e-22 110.5 186 41.4
Lsat_1_v5_gn_8_69441 Lactuca sativa HOM05D006970 ORTHO05D008332 3.0e-22 109.4 177 41.2
Sed0005019 Sechium edule HOM05D006970 ORTHO05D008332 1.5e-21 107.1 192 40.1
ClCG11G011830 Citrullus lanatus HOM05D006970 ORTHO05D008332 9.6e-21 104.4 188 38.8
CDE02G0129 Ceratophyllum demersum HOM05D006970 ORTHO05D008332 1.3e-20 104.0 186 37.1
SGA_v2.0_scaffold46G17371 Striga asiatica HOM05D006970 ORTHO05D008332 2.1e-20 103.2 184 37.0
DCAR_019800 Daucus carota HOM05D006970 ORTHO05D008332 4.8e-20 102.1 87 56.3
CsaV3_2G008660 Cucumis sativus L. HOM05D006970 ORTHO05D008332 1.8e-19 100.1 168 42.9
ATR0626G126 Amborella trichopoda HOM05D006970 ORTHO05D008332 2.4e-19 99.8 174 39.1
HPP92_017386 Vanilla planifolia HOM05D006970 ORTHO05D008332 2.4e-19 99.8 176 37.5
ECA236G3316 Erigeron canadensis HOM05D006970 ORTHO05D008332 9.0e-19 97.8 173 39.9
Ciclev10009750m.g Citrus clementina HOM05D006970 ORTHO05D008332 2.6e-18 96.3 167 40.7
HPP92_017039 Vanilla planifolia HOM05D006970 ORTHO05D008332 4.5e-18 95.5 175 39.4
Ciclev10027216m.g Citrus clementina HOM05D006970 ORTHO05D008332 1.3e-17 94.0 152 42.8
HPP92_017115 Vanilla planifolia HOM05D006970 ORTHO05D008332 1.3e-17 94.0 176 34.7
SalBow5G5711 Salvia bowleyana HOM05D006970 ORTHO05D008332 2.2e-17 93.2 165 35.2
HanXRQChr05g0140891 Helianthus annuus HOM05D006970 ORTHO05D008332 1.4e-16 90.5 170 34.7
ECA240G2451 Erigeron canadensis HOM05D006970 ORTHO05D008332 7.1e-16 88.2 234 32.1
Sopen07g004850 Solanum pennellii HOM05D006970 ORTHO05D008332 7.9e-15 84.7 126 42.9
arahy.Tifrunner.gnm1.ann1.Q5WKNQ Arachis hypogaea HOM05D059560 ORTHO05D008332 1.0e-14 84.3 117 50.4
Os06g0700300 Oryza sativa ssp. japonica HOM05D006970 ORTHO05D008332 1.8e-14 83.6 111 42.3
Zm00001eb226840 Zea mays HOM05D006970 ORTHO05D008332 1.6e-12 77.0 121 42.1
HPP92_021988 Vanilla planifolia HOM05D006970 ORTHO05D008332 8.2e-12 74.7 168 35.7
ClCG02G012930 Citrullus lanatus HOM05D001022 ORTHO05D000825 8.5e-09 64.7 90 36.7
MELO3C020881.2 Cucumis melo HOM05D001022 ORTHO05D000825 1.1e-08 64.3 81 38.3
CsaV3_2G017020 Cucumis sativus L. HOM05D001022 ORTHO05D000825 1.1e-08 64.3 104 34.6
HPP92_019661 Vanilla planifolia HOM05D001022 ORTHO05D000825 1.4e-08 63.9 107 34.6
Manes.12G097000 Manihot esculenta HOM05D001022 ORTHO05D000825 4.2e-08 62.4 171 28.7
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 5.5e-08 62.0 111 36.0
EL10Ac6g14856 Beta vulgaris HOM05D001022 ORTHO05D000825 9.4e-08 61.2 102 32.4
Nitab4.5_0000366g0130 Nicotiana tabacum HOM05D006970 ORTHO05D008332 1.2e-07 60.8 130 34.6
Aqoxy5G01737 Aquilegia oxysepala HOM05D001022 ORTHO05D000825 1.6e-07 60.5 99 35.4
Eucgr.F01951 Eucalyptus grandis HOM05D001022 ORTHO05D000825 1.6e-07 60.5 130 32.3
MBI16_g36201_MAGBIO Magnolia biondii HOM05D000217 ORTHO05D000121 1.6e-07 60.5 148 33.1
Nn6g31570 Nelumbo nucifera HOM05D001022 ORTHO05D000825 1.6e-07 60.5 115 34.8
Peaxi162Scf00385g00111 Petunia axillaris HOM05D001022 ORTHO05D000825 2.1e-07 60.1 158 31.0
Ciclev10029512m.g Citrus clementina HOM05D001022 ORTHO05D000825 3.6e-07 59.3 81 37.0
Dinv23566 Davidia involucrata HOM05D001022 ORTHO05D000825 4.6e-07 58.9 105 38.1
Glyma.11G163800 Glycine max HOM05D001767 ORTHO05D001714 4.6e-07 58.9 162 32.1
Hma1.2p1_0584F.1_g183420 Hydrangea macrophylla HOM05D001022 ORTHO05D000825 4.6e-07 58.9 126 31.0
Manes.15G146900 Manihot esculenta HOM05D001022 ORTHO05D000825 4.6e-07 58.9 104 32.7
TAR376G0150 Trochodendron aralioides HOM05D001022 ORTHO05D000825 4.6e-07 58.9 130 32.3
Haze_15156 Corylus avellana HOM05D001022 ORTHO05D000825 6.1e-07 58.5 99 35.4
MBI04_g46579_MAGBIO Magnolia biondii HOM05D001022 ORTHO05D000825 7.9e-07 58.2 133 30.8
HanXRQChr15g0472981 Helianthus annuus HOM05D001022 ORTHO05D000825 1.0e-06 57.8 100 36.0
Lj9C365T10 Lonicera japonica HOM05D001022 ORTHO05D000825 1.0e-06 57.8 106 32.1
TAR625G0641 Trochodendron aralioides HOM05D001022 ORTHO05D000825 1.0e-06 57.8 126 33.3
Atru.chr13.23 Acer truncatum HOM05D001022 ORTHO05D000825 1.4e-06 57.4 129 34.1
ATR0605G267 Amborella trichopoda HOM05D001022 ORTHO05D000825 1.4e-06 57.4 113 34.5
FAN24G3202 Fragaria x ananassa HOM05D001022 ORTHO05D000825 1.4e-06 57.4 92 37.0
HanXRQChr04g0128501 Helianthus annuus HOM05D001022 ORTHO05D000825 1.4e-06 57.4 104 31.7
PGR042G0153 Punica granatum HOM05D001022 ORTHO05D000825 1.4e-06 57.4 85 30.6
RcHm_v2.0_Chr6g0271961 Rosa chinensis HOM05D001022 ORTHO05D000825 1.4e-06 57.4 131 29.8
Aa31LG1G15130 Aethionema arabicum HOM05D001022 ORTHO05D000825 1.8e-06 57.0 100 33.0
PSO675G0748 Papaver somniferum HOM05D001022 ORTHO05D000825 1.8e-06 57.0 174 27.6
SEGI_11546 Sequoiadendron giganteum HOM05D006970 ORTHO05D008332 1.8e-06 57.0 90 38.9
Cfa021517 Carpinus fangiana HOM05D001022 ORTHO05D000825 2.3e-06 56.6 108 36.1
COL.COLO4_22167 Corchorus olitorius HOM05D001022 ORTHO05D000825 2.3e-06 56.6 104 35.6
Lj9P365T34 Lonicera japonica HOM05D001022 ORTHO05D000825 2.3e-06 56.6 85 34.1
Cfa004241 Carpinus fangiana HOM05D001022 ORTHO05D000825 3.0e-06 56.2 83 37.3
COL.COLO4_17794 Corchorus olitorius HOM05D001022 ORTHO05D000825 3.0e-06 56.2 98 33.7
Lsat_1_v5_gn_7_90001 Lactuca sativa HOM05D001022 ORTHO05D000825 3.0e-06 56.2 104 35.6
Thecc.01G044700 Theobroma cacao HOM05D001022 ORTHO05D000825 3.0e-06 56.2 93 38.7
PSO541G6233 Papaver somniferum HOM05D001022 ORTHO05D000825 3.9e-06 55.8 156 28.8
Sabra07G0029200 Salix brachista HOM05D001022 ORTHO05D000825 3.9e-06 55.8 100 33.0
THA.LOC104819208 Tarenaya hassleriana HOM05D001022 ORTHO05D000825 3.9e-06 55.8 100 33.0
MSTRG.23810 Avicennia marina HOM05D001022 ORTHO05D000825 5.1e-06 55.5 100 33.0
Eucgr.H01932 Eucalyptus grandis HOM05D001022 ORTHO05D000825 5.1e-06 55.5 108 32.4
Glyma.11G061800 Glycine max HOM05D001022 ORTHO05D000825 5.1e-06 55.5 170 31.8
Manes.13G133000 Manihot esculenta HOM05D001022 ORTHO05D000825 5.1e-06 55.5 157 28.0
Phvul.011G048800 Phaseolus vulgaris HOM05D001022 ORTHO05D000825 5.1e-06 55.5 147 25.2
Sopen04g036590 Solanum pennellii HOM05D001022 ORTHO05D000825 5.1e-06 55.5 129 32.6
SGA_v2.0_scaffold204G41631 Striga asiatica HOM05D001022 ORTHO05D000825 5.1e-06 55.5 100 35.0
THA.LOC104809985 Tarenaya hassleriana HOM05D001022 ORTHO05D000825 5.1e-06 55.5 152 29.6
Atru.chr5.2914 Acer truncatum HOM05D001022 ORTHO05D000825 6.7e-06 55.1 93 35.5
Lsat_1_v5_gn_3_93020 Lactuca sativa HOM05D001022 ORTHO05D000825 8.8e-06 54.7 175 29.1
SGA_v2.0_scaffold220G42602 Striga asiatica HOM05D001022 ORTHO05D000825 8.8e-06 54.7 126 31.7


User provided reference genes

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