Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 0.0e+00 1530.0 1071 100.0
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 3.6e-301 1038.5 1068 78.9
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 3.5e-280 968.8 1069 72.5
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.2e-259 900.6 1068 70.3
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 6.7e-239 831.6 1072 66.5
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 8.5e-234 814.7 1072 64.8
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.6e-232 810.4 1058 64.9
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 3.6e-232 809.3 1072 65.4
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 1.3e-231 807.4 1059 65.0
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 7.4e-222 775.0 809 81.8
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 1.4e-207 727.6 1058 64.1
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 1.5e-174 617.8 981 61.0
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 5.8e-166 589.3 1068 55.6
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 3.7e-165 586.6 1066 55.4
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 1.2e-163 581.6 1022 57.3
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 1.1e-161 575.1 1022 56.9
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.9e-157 560.5 1071 54.5
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 3.8e-157 560.1 1071 54.5
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.5e-150 538.1 1059 51.2
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 2.0e-150 537.7 1076 54.9
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 7.6e-150 535.8 1071 51.9
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 1.2e-147 528.5 1066 52.3
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 6.2e-144 516.2 741 52.6
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 4.0e-143 513.5 1060 52.0
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 2.6e-142 510.8 1071 52.4
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.4e-142 510.4 1071 52.2
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 3.4e-142 510.4 1054 44.5
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 7.6e-142 509.2 1072 53.4
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 8.7e-138 495.7 1065 51.5
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 1.8e-135 488.0 1046 52.7
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.4e-135 487.6 1071 51.4
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 6.9e-135 486.1 995 52.3
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 8.4e-133 479.2 1067 49.4
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 1.2e-131 475.3 1065 51.4
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 3.5e-131 473.8 969 55.7
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 4.6e-131 473.4 977 55.9
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 3.0e-130 470.7 1074 51.6
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 5.1e-130 469.9 1068 50.4
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 3.4e-126 457.2 915 56.0
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 1.1e-124 452.2 1071 49.5
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 8.2e-120 436.0 1064 48.0
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 1.5e-113 415.2 833 56.4
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 2.5e-113 414.5 1067 49.4
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 1.1e-111 409.1 1063 48.8
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 8.5e-109 399.4 1074 49.4
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 2.3e-106 391.3 1063 48.4
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 1.5e-105 388.7 1015 49.9
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 1.4e-103 382.1 807 58.9
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 5.9e-102 376.7 1058 40.8
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 2.5e-100 371.3 1062 46.5
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 4.2e-100 370.5 677 52.4
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 1.2e-99 369.0 1057 47.2
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 5.3e-95 353.6 1063 46.6
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.6e-94 352.1 1060 48.3
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 9.4e-92 342.8 924 51.3
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 1.6e-91 342.0 1058 46.5
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 8.0e-91 339.7 1062 45.8
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 2.3e-90 338.2 1062 46.6
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 6.7e-90 336.7 744 43.4
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 2.0e-89 335.1 634 46.2
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 1.8e-87 328.6 966 49.0
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 1.2e-86 325.9 748 42.8
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 2.9e-85 321.2 984 47.9
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 1.6e-83 315.5 674 52.1
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 2.1e-83 315.1 761 43.5
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 3.6e-83 314.3 748 42.4
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 4.7e-83 313.9 751 42.6
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 2.3e-82 311.6 1054 46.0
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 2.6e-81 308.1 760 41.6
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 4.4e-81 307.4 749 42.1
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 7.7e-78 296.6 1090 44.2
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 1.7e-77 295.4 1067 44.9
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 7.5e-73 280.0 1073 45.4
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 4.9e-72 277.3 360 43.3
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 7.0e-71 273.5 722 38.4
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 9.2e-71 273.1 752 39.5
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 9.2e-71 273.1 752 39.5
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 1.6e-70 272.3 675 47.9
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 2.0e-70 271.9 385 60.3
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.0e-69 269.6 756 39.0
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 1.9e-68 265.4 1008 35.0
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 3.4e-65 254.6 975 42.7
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.4e-63 249.2 689 44.8
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 1.0e-61 243.0 753 40.5
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 1.5e-57 229.2 759 39.7
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 7.5e-57 226.9 756 39.8
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 6.4e-56 223.8 672 46.1
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 9.2e-55 219.9 165 69.7
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 6.6e-53 213.8 925 45.9
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 7.1e-39 167.2 737 37.3
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 5.1e-37 161.0 173 47.4
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.1e-36 159.8 481 53.8
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 2.4e-31 142.1 373 49.3
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 5.4e-31 141.0 564 36.0
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 6.0e-30 137.5 450 52.9
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 8.7e-29 133.7 451 52.8
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 2.5e-28 132.1 453 50.6
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 8.1e-27 127.1 536 47.2
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 4.5e-25 121.3 210 36.2
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 7.9e-22 110.5 649 35.9
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 7.9e-22 110.5 413 54.7
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 4.3e-20 104.8 147 42.2
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 7.4e-20 104.0 411 54.0
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 9.0e-18 97.1 100 53.0
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 5.1e-13 81.3 104 40.4
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 5.1e-13 81.3 173 34.1
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 3.1e-10 72.0 180 26.1
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 4.0e-10 71.6 152 32.9
Nitab4.5_0002941g0070 Nicotiana tabacum HOM05D008483 ORTHO05D010726 1.5e-09 69.7 98 34.7
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.4e-07 63.2 106 31.1
Nitab4.5_0000030g0110 Nicotiana tabacum HOM05D008483 ORTHO05D010726 1.4e-07 63.2 97 32.0
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 2.5e-07 62.4 79 39.2
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 3.2e-07 62.0 103 35.9
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 4.2e-07 61.6 279 22.2
AagrBONN_evm.TU.Sc2ySwM_228.4458 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.1e-07 60.8 249 22.5
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 7.1e-07 60.8 236 22.5
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.1e-07 60.8 73 42.5
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 9.3e-07 60.5 103 29.1
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 9.3e-07 60.5 103 29.1
Lalb_Chr01g0012531 Lupinus albus HOM05D000001 ORTHO05D009667 9.3e-07 60.5 126 31.0
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 1.2e-06 60.1 107 34.6
AagrBONN_evm.TU.Sc2ySwM_362.78 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-06 59.3 251 22.7
AagrBONN_evm.TU.Sc2ySwM_369.30 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-06 59.3 126 31.0
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.1e-06 59.3 69 40.6
RcHm_v2.0_Chr5g0074231 Rosa chinensis HOM05D009519 ORTHO05D010307 2.1e-06 59.3 54 48.1
Ca_07172_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009667 2.7e-06 58.9 125 31.2
HanXRQChr04g0120331 Helianthus annuus HOM05D002986 ORTHO05D003966 2.7e-06 58.9 129 30.2
AagrBONN_evm.TU.Sc2ySwM_228.635 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 58.5 250 23.2
DCAR_025464 Daucus carota HOM05D000001 ORTHO05D009667 3.5e-06 58.5 125 28.0
AagrBONN_evm.TU.Sc2ySwM_117.3629 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 58.2 125 26.4
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.6e-06 58.2 73 41.1
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 4.6e-06 58.2 105 26.7
EL10Ac4g09424 Beta vulgaris HOM05D006888 ORTHO05D008371 6.1e-06 57.8 107 28.0
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 6.1e-06 57.8 100 33.0
Medtr2g078690 Medicago truncatula HOM05D000424 ORTHO05D000355 6.1e-06 57.8 121 27.3
Zm00001eb326140 Zea mays HOM05D003335 ORTHO05D003853 6.1e-06 57.8 51 51.0
Zm00001eb355390 Zea mays HOM05D003335 ORTHO05D003853 6.1e-06 57.8 51 51.0
AagrBONN_evm.TU.Sc2ySwM_114.24 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.9e-06 57.4 126 28.6
AL1G45930 Arabidopsis lyrata HOM05D008483 ORTHO05D010726 7.9e-06 57.4 110 28.2
EL10Ac8g20438 Beta vulgaris HOM05D002986 ORTHO05D007611 7.9e-06 57.4 89 34.8
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.9e-06 57.4 70 41.4
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.9e-06 57.4 70 41.4
Nitab4.5_0003261g0020 Nicotiana tabacum HOM05D006842 ORTHO05D008908 7.9e-06 57.4 49 55.1
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 7.9e-06 57.4 315 23.2
TPR.G25962 Trifolium pratense HOM05D002986 ORTHO05D007611 7.9e-06 57.4 102 32.4


User provided reference genes

Program Settings