Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.2e-34 148.3 70 100.0
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.8e-26 120.9 59 94.9
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.9e-25 118.6 59 93.2
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 5.5e-25 117.1 58 93.1
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 6.1e-24 113.6 59 88.1
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 6.1e-24 113.6 59 88.1
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 1.0e-23 112.8 59 88.1
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.8e-23 112.1 59 84.7
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 3.0e-23 111.3 59 86.4
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 8.8e-23 109.8 59 86.4
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 2.8e-21 104.8 59 78.0
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 1.1e-20 102.8 59 76.3
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 3.1e-20 101.3 68 67.6
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 5.3e-20 100.5 59 71.2
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 6.9e-20 100.1 59 74.6
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 1.2e-19 99.4 59 71.2
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.2e-19 99.4 61 72.1
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.0e-18 96.3 59 71.2
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 2.2e-18 95.1 59 66.1
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 5.0e-18 94.0 61 68.9
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 8.5e-18 93.2 59 67.8
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 8.5e-18 93.2 59 67.8
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.1e-17 92.8 59 71.2
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 2.5e-17 91.7 59 69.5
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 3.2e-17 91.3 59 67.8
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 5.5e-17 90.5 59 66.1
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 5.5e-17 90.5 59 66.1
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 5.5e-17 90.5 59 66.1
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 7.2e-17 90.1 59 67.8
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 7.2e-17 90.1 59 64.4
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 7.2e-17 90.1 59 66.1
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 9.4e-17 89.7 58 69.0
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 9.4e-17 89.7 59 69.5
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 1.6e-16 89.0 60 63.3
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 2.7e-16 88.2 59 64.4
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 2.7e-16 88.2 59 64.4
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.7e-16 88.2 59 66.1
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 3.6e-16 87.8 59 66.1
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.7e-16 87.4 59 62.7
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 6.1e-16 87.0 59 62.7
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 6.1e-16 87.0 59 64.4
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 6.1e-16 87.0 59 62.7
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 6.1e-16 87.0 59 66.1
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 8.0e-16 86.7 59 67.8
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 8.0e-16 86.7 61 65.6
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.0e-15 86.3 59 62.7
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 1.4e-15 85.9 59 62.7
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 1.8e-15 85.5 59 64.4
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 2.3e-15 85.1 59 67.8
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 3.0e-15 84.7 59 62.7
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.9e-15 84.3 59 61.0
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.9e-15 84.3 59 66.1
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 6.7e-15 83.6 59 61.0
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 8.8e-15 83.2 59 62.7
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 1.5e-14 82.4 59 64.4
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 2.0e-14 82.0 59 64.4
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 2.6e-14 81.6 59 59.3
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 2.6e-14 81.6 59 55.9
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 4.4e-14 80.9 59 59.3
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 7.4e-14 80.1 59 61.0
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.7e-13 79.0 58 60.3
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 2.2e-13 78.6 59 61.0
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 3.7e-13 77.8 61 57.4
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 6.3e-13 77.0 59 54.2
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 1.1e-12 76.3 59 57.6
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.1e-12 76.3 60 56.7
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.4e-12 75.9 59 52.5
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 1.4e-12 75.9 59 55.9
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.8e-12 75.5 59 54.2
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 2.4e-12 75.1 59 54.2
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 3.1e-12 74.7 59 59.3
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 4.1e-12 74.3 59 54.2
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 4.1e-12 74.3 59 52.5
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 4.1e-12 74.3 59 50.8
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 4.1e-12 74.3 58 56.9
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 5.3e-12 73.9 59 54.2
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 5.3e-12 73.9 59 54.2
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 5.3e-12 73.9 59 54.2
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 7.0e-12 73.6 59 52.5
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 7.0e-12 73.6 59 50.8
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 7.0e-12 73.6 58 56.9
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 7.0e-12 73.6 59 52.5
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 9.1e-12 73.2 59 49.2
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 1.6e-11 72.4 59 54.2
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 2.0e-11 72.0 59 49.2
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 2.6e-11 71.6 59 52.5
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 5.0e-10 67.4 59 49.2
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 5.0e-10 67.4 59 47.5
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.5e-09 65.9 58 44.8
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 1.9e-09 65.5 40 67.5
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 1.2e-08 62.8 60 50.0
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 2.7e-08 61.6 43 62.8
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.0e-07 58.2 59 44.1


User provided reference genes

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