Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 1.3e-135 486.5 263 100.0
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.1e-105 387.1 233 88.4
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.7e-103 379.8 233 85.8
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 3.9e-100 368.6 233 85.0
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 2.5e-94 349.4 186 100.0
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 2.2e-90 336.3 230 78.3
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 2.8e-82 309.3 235 74.0
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 1.1e-81 307.4 234 73.9
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 2.5e-78 296.2 234 72.2
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 2.6e-75 286.2 234 70.5
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.7e-66 256.9 236 63.6
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 4.9e-66 255.4 237 64.6
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 2.0e-64 250.0 237 63.7
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 3.8e-63 245.7 233 63.9
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 4.9e-58 228.8 245 54.3
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 1.3e-55 220.7 243 53.9
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 2.5e-54 216.5 233 51.9
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 3.3e-54 216.1 245 52.7
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 1.6e-53 213.8 244 53.7
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 6.2e-53 211.8 233 54.1
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 8.0e-53 211.5 233 51.9
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 8.0e-53 211.5 233 51.9
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.1e-52 211.1 239 53.6
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 1.8e-52 210.3 233 54.9
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.5e-51 207.2 233 51.9
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 3.4e-51 206.1 235 51.9
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 4.4e-51 205.7 230 52.2
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 7.5e-51 204.9 236 54.7
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 9.8e-51 204.5 236 54.7
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.7e-50 203.8 273 47.3
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.7e-50 203.8 228 53.9
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 2.9e-50 203.0 233 53.2
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 2.9e-50 203.0 231 51.5
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.9e-50 202.2 233 51.5
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.4e-49 200.7 236 53.0
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 1.4e-49 200.7 237 50.6
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.4e-49 200.7 237 50.2
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 1.4e-49 200.7 233 51.9
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.9e-49 200.3 237 50.2
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.4e-49 199.9 237 50.2
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 2.4e-49 199.9 236 51.7
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 3.2e-49 199.5 232 51.3
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 4.1e-49 199.1 233 51.5
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 5.4e-49 198.7 273 47.3
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.0e-49 198.4 237 49.8
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 9.2e-49 198.0 237 51.9
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 2.7e-48 196.4 232 51.3
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 4.6e-48 195.7 238 49.2
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 7.8e-48 194.9 238 47.9
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.0e-47 194.5 244 48.0
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.0e-47 194.5 233 48.9
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 1.3e-47 194.1 233 49.4
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.3e-47 193.4 243 51.0
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 6.6e-47 191.8 238 47.9
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 8.6e-47 191.4 271 45.0
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.5e-46 190.7 238 47.5
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 5.6e-46 188.7 228 50.4
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 1.6e-45 187.2 237 46.8
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 1.6e-45 187.2 237 46.8
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 1.6e-45 187.2 243 47.3
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 2.1e-45 186.8 231 48.5
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 2.1e-45 186.8 243 46.9
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 2.8e-45 186.4 241 46.5
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 3.6e-45 186.0 237 46.4
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 4.7e-45 185.7 243 46.1
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 4.7e-45 185.7 239 50.6
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.1e-44 184.5 239 46.4
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.8e-44 183.7 237 48.9
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.8e-44 183.7 238 45.8
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 2.3e-44 183.3 237 45.6
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 3.1e-44 183.0 237 46.8
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 3.1e-44 183.0 222 51.8
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 4.0e-44 182.6 252 51.2
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 5.2e-44 182.2 237 45.1
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 5.2e-44 182.2 234 49.1
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.5e-43 180.6 237 46.4
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.5e-43 180.6 237 45.6
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.0e-43 180.3 272 44.1
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 2.6e-43 179.9 262 43.5
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 4.4e-43 179.1 221 48.4
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 4.9e-42 175.6 234 47.0
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 6.4e-42 175.3 238 48.7
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 8.3e-42 174.9 249 48.6
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.1e-41 174.5 238 45.8
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 3.2e-41 172.9 233 47.6
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 4.1e-41 172.6 242 47.1
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.6e-40 170.6 232 44.0
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 2.1e-40 170.2 227 48.5
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 8.6e-39 164.9 257 44.0
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 1.1e-38 164.5 241 44.0
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 4.3e-38 162.5 241 45.2
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.2e-37 161.0 270 42.2
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 6.8e-36 155.2 237 42.6
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 6.8e-36 155.2 237 42.6
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 6.8e-36 155.2 203 47.8
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 8.9e-36 154.8 170 48.8
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 4.4e-35 152.5 219 46.1
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 1.3e-34 151.0 222 45.9
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 8.4e-34 148.3 260 42.7
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 1.4e-33 147.5 228 43.0
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 3.2e-33 146.4 212 45.8
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 9.2e-33 144.8 175 49.7
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.6e-32 144.1 208 44.2
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 5.1e-31 139.0 236 41.1
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.2e-29 134.4 222 39.2
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.1e-28 131.3 168 46.4
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 2.4e-28 130.2 159 47.8
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 5.2e-28 129.0 220 41.4
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.1e-25 121.3 181 43.6
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.2e-25 119.4 160 48.1
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.2e-24 117.9 237 41.4
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.5e-22 110.9 224 36.2
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 2.1e-21 107.1 171 43.3
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 5.3e-20 102.4 202 38.1
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 9.9e-19 98.2 167 38.9
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.9e-18 95.9 122 48.4
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 3.2e-17 93.2 135 44.4
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 2.7e-16 90.1 125 44.8
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 3.5e-16 89.7 234 34.6
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 5.1e-15 85.9 79 59.5
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 2.5e-14 83.6 99 53.5
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 5.5e-09 65.9 136 41.2
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 8.7e-07 58.5 72 41.7


User provided reference genes

Program Settings